BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474597
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55360.1 | Symbols: | Protein of Unknown Function (DUF239) ... 2562 0.0
AT3G13510.1 | Symbols: | Protein of Unknown Function (DUF239) ... 1293 0.0
> AT1G55360.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr1:20666222-20668726 REVERSE LENGTH=1797
Length=1797
Score = 2562 bits (1387), Expect = 0.0
Identities = 1522/1588 (96%), Gaps = 6/1588 (0%)
Strand=Plus/Plus
Query 141 tttttGGGTGACAATGGGAGGAGTGGTGCATCTTAGCACGGTGAAGTTAGCTAGAGGTTT 200
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 212 TTTTTGGGTGACAATGGGAGGAGTGGTGCATCTTAGCACGGCGAAGTTAGCTAGAGGTTT 271
Query 201 CTTAGTGTGTTTATTTCTTTGGGGGGTTTTCTCGCTATCATACGCTGCTAGGTCCGGCGA 260
|||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 272 CTTAGTGTGTTTATGTCTTTGGGGTTTTTTCTCGCTATCATACGCCGCAAGGTCCGGCGT 331
Query 261 ATCAAAGCAGAAGTTTGAAGTGAAGAAGCATTTGAACAGATTGAACAAACCTGCTGTCAA 320
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 332 ATCAAAGCAGAAGTTTGAAGTGAAGAAACATTTGAACAGGCTGAACAAACCTGCTGTCAA 391
Query 321 AAGCATTCAGAGCCCAGATGGTGATATTATTGACTGTGTTCCAATCTCAAAGCAACCAGC 380
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 392 AAGCATTCAGAGTTCAGATGGTGATGTGATTGACTGTGTTCCAATCTCAAAGCAACCAGC 451
Query 381 TTTTGATCATCCGTTCCTCAAAGGTCACAAGATTCAGATGAGGCCTAATTACCATCCTGA 440
||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct 452 TTTTGATCATCCGTTCCTCAAAGATCACAAGATTCAGATGAAGCCTAATTACCACCCTGA 511
Query 441 AGGACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAGAAATGCATAT 500
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 512 AGGACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAGAAGGGCATAT 571
Query 501 CCCTCAGTTGTGGCATCGATATGGTAAATGTACTGAAGGAACCATTCCCGTGAGGAGGAC 560
|||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 572 TCCTCAGTTGTGGCATCGATATGGTAAATGTTCTGAAGGAACTATTCCCATGAGGAGGAC 631
Query 561 AAAGGAAGATGATGTTTTGAGAGCAAGTTCTGTTAAAAGATATGGCAAGAAGAAGCGTAG 620
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 632 AAAGGAAGATGATGTTTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGCGTAG 691
Query 621 AAGTGTCCCTTTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGCA 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 AAGTGTCCCTTTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGCA 751
Query 681 TGCCATAGCTTATGTGGAAGGAGATAAGTACTATGGAGCTAAGGCGACTATTAACGTGTG 740
||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 752 TGCCATAGCTTATGTAGAAGGAGATAAGTACTATGGAGCTAAGGCTACTATAAATGTGTG 811
Query 741 GGAGCCAAAGATACAGCAGCAGAATGAGTTCAGTTTGTCACAGATATGGCTTCTTGGTGG 800
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 812 GGAGCCAAAGATACAGCAGCAGAATGAGTTCAGCTTGTCACAGATATGGCTTCTTGGTGG 871
Query 801 CTCATTCGGACAAGATCTTAACAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATCTGTA 860
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 872 CTCATTCGGACAAGATCTTAATAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATCTGTA 931
Query 861 TGGTGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTACCGG 920
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 TGGTGACAATAACACGAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTACCGG 991
Query 921 TTGCTACAACCATCTCTGCTCGGGTTTTATTCAAGTCAACAGTGACATAGCAATGGGAGC 980
||||||||| | ||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 992 TTGCTACAATCTTCTTTGCTCCGGTTTTATTCAAATCAACAGTGACATAGCAATGGGAGC 1051
Query 981 AAGCATTTCCCCGGTCTCTGGATATCGTAATTCGCAGTACGATATCAGTATTCTGATCTG 1040
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1052 AAGCATTTCCCCGGTCTCTGGATATCGTAACTCGCAGTACGATATCAGTATTCTGATCTG 1111
Query 1041 GAAGGATCCTAAAGAGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTGGGCTA 1100
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1112 GAAGGATCCTAAAGAGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTAGGCTA 1171
Query 1101 TTGGCCATCTTTTCTCTTCTCCTACTTAACTGAGAGTGCATCGATGATTGAATGGGGAGG 1160
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1172 TTGGCCATCTTTTCTCTTCTCCTACTTGACAGAAAGTGCATCGATGATTGAATGGGGAGG 1231
Query 1161 AGAAGTCGTGAACTCGCAATCAGATGGCCAGCACACTTCAACGCAGATGGGCAGTGGTCG 1220
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1232 AGAAGTCGTGAACTCACAATCAGATGGCCAGCACACTTCAACACAAATGGGCAGTGGTAA 1291
Query 1221 ATTTCCAGAAGAAGGCTTTAGCAAAGCAAGTTACTTCAGGAACATTCAGGTAGTTGATGG 1280
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1292 ATTTCCAGAAGAAGGCTTTAGCAAAGCAAGTTACTTCAGGAACATTCAGGTGGTTGATGG 1351
Query 1281 GTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGAACAGTCTAACTGTTA 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGAACAGTCTAACTGTTA 1411
Query 1341 TGATGTTCAAACCGGAAGCAATGATGATTGGGGCCATTACTTTTACTATGGAGGTCCTGG 1400
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1412 TGATGTTCAAACCGGAAGCAATGATGATTGGGGTCATTACTTTTACTATGGAGGCCCTGG 1471
Query 1401 TAAAAACCAGAAGTGTCCATAAACTAGGCACCAAGTAGTTACTGGCTCGTCTGTCGAGTT 1460
|||||||||||||||||||||| |||||| ||||||||| | |||||||||| |||||||
Sbjct 1472 TAAAAACCAGAAGTGTCCATAAGCTAGGCTCCAAGTAGT-AGTGGCTCGTCTCTCGAGTT 1530
Query 1461 CTCTTGTCTTGTGAATTCACCATGTTTGTTTCTACACACACTCACTCAAATCCGCCTTCT 1520
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1531 ATCTTGTCTTGTGAATTCACCTTGTTTCTTTCTACACACACTCACTCAAATCCGCCTTCT 1590
Query 1521 TGGGTAGTTTT-AGGGATGGTTAAAGTTATGTAATGGTAAAAGTTTGGTGTCTTTTTCCC 1579
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1591 TGGGTAGTTTTTAGGGATGGTTAAAGTTATGTAATGGTAAAAGTTTGGTGTCTTTTTCTC 1650
Query 1580 CATGTAAGTAGGTGGGGAAGAAG---AAAGGTGTGGCTCAAGTTTCTTTGAAAACTCAGA 1636
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1651 CATGTAAGTAGGTGGGGAAGAAGTGGAAAGGTGTGGCTTAAGTTTCTTTGAAAACTCAGA 1710
Query 1637 AACTTTGGCCCTTAGTGTAATTTTACTTTGTCTCCTTTTGTATTGTGATTTGTTTAATCA 1696
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1711 AACTTTGGCCCTTAGTGTAATTTTACTTTGTCTCCTTT-GTATTGTGATTTGTTTAAACA 1769
Query 1697 AGTGAATGAATCTCTCTTTCTCACGCTT 1724
|||||||||||||||||||||||| |||
Sbjct 1770 AGTGAATGAATCTCTCTTTCTCACTCTT 1797
Score = 97.1 bits (52), Expect = 5e-19
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1 AGTTTGGATTTTGATCTGTGTGGTTGGATTGTTGCGAGAACTAAACCAGACCCACCTT 58
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 20 AGTTCGGATTTTGATCTGTGTGGTTGGATTGTTGCAAGAACTAAACCAGACCCACCTT 77
> AT3G13510.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr3:4403500-4406091 FORWARD LENGTH=1886
Length=1886
Score = 1293 bits (700), Expect = 0.0
Identities = 1101/1291 (85%), Gaps = 41/1291 (3%)
Strand=Plus/Plus
Query 150 GACAATGGGAGGAGTGGTGCATCTTAGCAC-GGTGAAGTT-AGCTAGAGGTTTCTTAGTG 207
|||||||||| | | | |||| ||||| | ||||||||| | |||||||||||| |||
Sbjct 273 GACAATGGGA-G-CT-GAGCATTTTAGC-CTGGTGAAGTTCA-ATAGAGGTTTCTTTGTG 327
Query 208 TGTTTATTTCTTTGGGGGGTTTTCTCGCTATCAT--AC-GCTGCTAGGTCCGGCGAATCA 264
|||||| |||| | | |||||||||| | | || || || | ||| |||
Sbjct 328 TGTTTA------TGGGTGATGCTCTCGCTATCTTGCGCAGCAGCGAGCTATGGCTCTTCA 381
Query 265 AAGCAGAAGTTTGAAGTGAAGAAGCATTTGAACAGATTGAACAAACCTGCTGTCAAAAGC 324
| ||| |||||||| ||||||||||||||||| || | ||||||||| |||| || | |
Sbjct 382 AGGCAAAAGTTTGAGGTGAAGAAGCATTTGAATAGGCTCAACAAACCTCCTGTTAAGA-C 440
Query 325 -ATTCAGAGCCCAGATGGTGATATTATTGACTGTGTTCCAATCTCAAAGCAACCAGCTTT 383
|||||||| |||||||| ||||| || |||||| |||| || |||||||| ||||||||
Sbjct 441 TATTCAGAGTCCAGATGGAGATATAATCGACTGTATTCCTATTTCAAAGCAGCCAGCTTT 500
Query 384 TGATCATCCGTTCCTCAAAGGTCACAAGATTCAGATGAGGCCTAATTACCATCCTGAAGG 443
||| || || |||||||||| |||||||||||||||||||||| |||||| || |||||
Sbjct 501 TGACCACCCCTTCCTCAAAGACCACAAGATTCAGATGAGGCCTAGTTACCACCCAGAAGG 560
Query 444 ACTCTTTGATGACAACAAAGTGTCTGCTCCTAAATCAAATGAGAAAGAAA-TGCATATCC 502
|||||||||||||| ||| || | || || || |||| | |||||||| | |||||||
Sbjct 561 GCTCTTTGATGACAA-TAAG-GTAT-CTGCTGAACCAAAGGGGAAAGAAACT-CATATCC 616
Query 503 CTCAGTTGTGGCATCGATATGGTAAATGTACTGAAGGAACCATTCCCGTGAGGAGGACAA 562
||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 617 CTCAGTTGTGGCACCGGTATGGCAAATGTACTGAAGGAACCATTCCCATGAGGAGGACAA 676
Query 563 AGGAAGATGATGTTTTGAGAGCAAGTTCTGTTAAAAGATATGGCAAGAAGAAGCGTAGAA 622
||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 677 GGGAGGATGATGTGTTGAGAGCAAGTTCAGTTAAAAGATATGGCAAGAAGAAGCATAGGT 736
Query 623 GTGTCCCT-TTACCTAAATCTGCAGAACCTGACCTTATTAACCAAAGTGGTCACCAGCAT 681
||| ||| || ||||||||||| ||||| ||||| || ||||||| |||||| || ||
Sbjct 737 CTGTTCCTATT-CCTAAATCTGCGGAACCCGACCTCATCAACCAAAATGGTCATCAACAC 795
Query 682 GCCATAGCTTATGTGGAAGGAGATAAGTACTATGGAGCTAAGGCGACTATT-AACGTGTG 740
|||||||||||||||||||||||||||||||| ||||||||||||||| || || |||||
Sbjct 796 GCCATAGCTTATGTGGAAGGAGATAAGTACTACGGAGCTAAGGCGACT-TTGAATGTGTG 854
Query 741 GGAGCCAAAGATACAGCAGCA-GAATGAGTTCAGTTTGTCACAGATATGGCTTCTT-GGT 798
|||||||||||||||| | || || || ||||| ||||| |||||||||||| || ||
Sbjct 855 GGAGCCAAAGATACAG-AACACAAACGAATTCAGCTTGTCGCAGATATGGCTT-TTGGGG 912
Query 799 GGCTCATTCGGACAAGATCTTAACAGCATCGAAGCTGGTTGGCAGGTGAGCCCGGATCTG 858
|| || || ||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 913 GGTTCCTTTGGACAAGATCTTAACAGTATTGAAGCTGGCTGGCAGGTGAGTCCGGATCTA 972
Query 859 TATGGTGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCATATCAAGCTACC 918
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 973 TATGGAGACAATAACACAAGACTCTTCACTTACTGGACTAGTGATGCCTATCAAGCTACC 1032
Query 919 GGTTGCTACAACCATCTCTGCTCGGGTTTTATTCAAGTCAACAGTGACATAGCAATGGGA 978
||||||||||| | ||| ||||| ||||| |||||| |||||||||||||||||||||||
Sbjct 1033 GGTTGCTACAATCTTCTTTGCTCAGGTTTCATTCAAATCAACAGTGACATAGCAATGGGA 1092
Query 979 GCAAGCATTTCCCCGGTCTCTGGATATCGTAATTCGCAGTACGATATCAGTATTCTGATC 1038
|||||||| || || ||||||||||| || ||||| ||||| |||||||||||||| |||
Sbjct 1093 GCAAGCATCTCACCAGTCTCTGGATACCGCAATTCCCAGTATGATATCAGTATTCTAATC 1152
Query 1039 TGGAAGGATCCTAAAG-AGGGACACTGGTGGATGCAATTTGGGAACGGCTATGTTTTGGG 1097
||||||||||| |||| ||||||| |||||||||||||||||||| || |||||||||||
Sbjct 1153 TGGAAGGATCC-AAAGGAGGGACATTGGTGGATGCAATTTGGGAATGGGTATGTTTTGGG 1211
Query 1098 CTATTGGCCATCTTTTCTCTTCTCCTACTTAACTGAGAGTGCATCGATGATTGAATGGGG 1157
|| |||||||| ||||| ||||||||| |||| || |||||||||||||| ||||||||
Sbjct 1212 GTACTGGCCATCATTTCTGTTCTCCTACCTAACAGAAAGTGCATCGATGATCGAATGGGG 1271
Query 1158 AGGAGAAGTCGTGAACTCGCAATCAGATGGCCAGCACACTTCAACGCAGATGGGCAGTGG 1217
||||||||| |||||||| || ||||| ||||| ||||||| || |||||||| |||||
Sbjct 1272 AGGAGAAGTTGTGAACTCACAGTCAGAAGGCCACCACACTTGGACACAGATGGGAAGTGG 1331
Query 1218 TCGA-TTTCCAGAAGAAGGCTTT-AGCAAAGCAAGTTACTT-CAGGAACATTCAGGTAGT 1274
|| | |||||||||||||| ||| || |||||||||||||| | |||||||||| || ||
Sbjct 1332 TC-ACTTTCCAGAAGAAGG-TTTCAGTAAAGCAAGTTACTTTC-GGAACATTCAAGTCGT 1388
Query 1275 TGATGGGTCAAACAACCTCAAGGCACCTAAAGGACTTGGAACATTCACTGA-ACAGTCTA 1333
||||| || ||||||||||| ||||| ||||||||||| |||||||| || | |||| |
Sbjct 1389 AGATGGATCCAACAACCTCAAAGCACCAAAAGGACTTGGTACATTCACCGAGA-AGTCCA 1447
Query 1334 ACTGTTATGATGTTCAAACCGGAAGCAATGATGATTGGGGCCATTACTTTTACTATGGAG 1393
||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||| || |
Sbjct 1448 ACTGTTATGATGTTCAAACGGGAAGCAATGATGACTGGGGACATTACTTCTACTACGGTG 1507
Query 1394 GTCCTGGTAAAAACCAGAAGTGTCCATAAAC 1424
|||| ||||| ||| |||| || ||||||||
Sbjct 1508 GTCCCGGTAAGAACAAGAACTGCCCATAAAC 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5