BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474620 Length=1995 Score E Sequences producing significant alignments: (Bits) Value AT1G55590.1 | Symbols: | RNI-like superfamily protein | chr1:2... 3110 0.0 > AT1G55590.1 | Symbols: | RNI-like superfamily protein | chr1:20769320-20771871 REVERSE LENGTH=2095 Length=2095 Score = 3110 bits (1684), Expect = 0.0 Identities = 1846/1924 (96%), Gaps = 12/1924 (1%) Strand=Plus/Plus Query 79 TCATGGAGGAAGTGACGAGATCTGTGTTAGCGGAGGAGATACTAAAGCGTTTAGATCTGG 138 ||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||| Sbjct 114 TCATGGAGGAAGTGACGAGATCTGTGTTAGCAGAAGAAATACTGAAGCGTTTAGATCTGG 173 Query 139 AGAATCTCTGTTCCGTCGCCTGCGTTTCCACCACTCTCCGCTCCGCCGTTGTCTCCGGCG 198 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 174 AGAATCTCTGTTCCGTCGCATGCGTTTCCACCACTCTCCGCTCCGCCGTTGTTTCCGGCG 233 Query 199 TTCTACCTtctcttacctctctcgatctctctgttttctctcCGGACGATGAAACTCTGA 258 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 234 TTCTTCCTTCTCTTACCTCCCTCGATCTCTCTGTTTTCTCTCCGGACGATGAAACTCTGA 293 Query 259 ATCACGTGTTGCGTGGTTGTATCGGACTTAGTAGCTTAACTCTGAATTGTCTCCGCCTTA 318 |||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 294 ATCACGTGCTGCGTGGTTGTATCGGACTCAGCAGCTTAACTCTGAATTGTCTCCGCCTTA 353 Query 319 ACGCTGCTTCTGTGCGT-GAGGTTCTCGGGCCACATCTCCGAGAGCTTCACTTGCTCAGG 377 ||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct 354 ACGCTGCTTCTGTGCGTGGA-GTTCTCGGGCCACATCTCCGAGAACTTCACTTGCTCAGG 412 Query 378 TGTTCGCTTTTATCCTCCACCGTCCTCACTTCCATCGGCATCCTCTGCCCAAATCTCCGG 437 ||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 413 TGTTCACTTTTATCCTCCACCGTCCTCACTTACATTGGCACCCTCTGCCCAAATCTCCGG 472 Query 438 GTTCTTTCCCTGGAAATGGCAGACCTGGATTCTCCTGCTGTTTTTCAGTCTAACTTGACG 497 |||||| | |||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 473 GTTCTTACTCTGGAAATGGCAGACCTGGATTCTCCCGATGTTTTTCAGTCTAACTTGACG 532 Query 498 CAGATGCTTAACGGGTGTCCGTATCTGGAGTCTCTGCAACTTAATATCCGAGGTATCCTA 557 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 533 CAGATGCTTAACGGGTGTCCTTATCTGGAGTCTCTGCAACTTAATATCCGAGGTATCCTA 592 Query 558 GTAGATGCCACCGCTTTCCAGTCTGTTAGATTCTCCTTGCCAGAAACTCTCAAAGTTCTA 617 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 593 GTAGATGCCACCGCTTTCCAGTCTGTTAGATTCTCCTTGCCAGAAACTCTCAAAGCTCTA 652 Query 618 AGGTTACAGCCACTTCTTGAGTCTGAGGCAATTCTTCTCATGAACAGATTCAAAGTCACT 677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 653 AGGTTACAGCCACTTCTTGAGTCTGAGGCAATTCTTCTCATGAACAGATTCAAAGTGACT 712 Query 678 GGAACTTATTTGTCTCAGCCTGA-T-T-ATAGTGCCTTGCTTTCTCCTTCACCTTCTTTT 734 ||||||||||| ||||||||||| | | ||||||||||||| |||||||||||||||||| Sbjct 713 GGAACTTATTTATCTCAGCCTGATTATAATAGTGCCTTGCTATCTCCTTCACCTTCTTTT 772 Query 735 ACTTTGCAAACCCTGTCTCTTGTCCTGGACTTGATATCTGACAGGCTAATCATAGCTATC 794 |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 773 ACTTTGCAAAGCCTGTCTCTTGTCCTGGACTTGATATCTGACAGGCTTATCATAGCTATC 832 Query 795 ACAGGTTCTCTTCCTCAGCTTGTCAAACTGGACCTTGAAGACCGTCCTGAAAAAGAGCCA 854 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 833 ACAGGTTCTCTTCCTCAACTTGTCAAACTGGACCTTGAAGATCGTCCTGAAAAAGAGCCA 892 Query 855 TTTCCTGACAGTGACTTGACTTACACTGGGCTTCAGGCTCTGGGTTATTGTCAGCAACTC 914 ||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 893 TTTCCCGACAATGACTTGACTTACACTGGGCTTCAGGCTCTCGGTTTTTGTCAGCAACTC 952 Query 915 ACAAGCCTCTCTCTGGTTCGAACTTGTTACAACCGCAAGATATCATTCAAGAGAATAAAC 974 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 ACAAGCCTCTCTCTGGTTCGAACTTGTTACAACCGCAAGATATCATTCAAGAGAATAAAC 1012 Query 975 GATATGGGTATATTTCTTCTTTCCGAGGCTTGCAAGGGTTTAGAGTCAGTGAGACTCGGT 1034 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1013 GATATGGGTATATTTCTTCTCTCCGAGGCTTGCAAGGGTTTAGAGTCTGTGAGACTCGGT 1072 Query 1035 GGGTTCCCAAAAGTCAGCGACGCTGGTTTTGCATCGCTCCTTCACTCATGTCGGAACTTG 1094 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1073 GGGTTCCCAAAAGTCAGCGACGCTGGTTTTGCGTCGCTCCTTCACTCATGTCGGAACTTG 1132 Query 1095 AAAAAGTTTGAAATACGAGGTGCCTTCCTGTTATCTGATTTGGCATTCCATGACGTCACA 1154 |||||||||||| | ||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1133 AAAAAGTTTGAAGTTCGAGGTGCCTTCCTGTTGTCTGATTTGGCATTTCATGATGTCACA 1192 Query 1155 GGGTCTTCCTGTTCTCTTCAAGAGGTCAGACTCTTGACGTGCCCTCTCATAACCAGCGAA 1214 |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| Sbjct 1193 GGGTCTTCCTGTTCTCTTCAAGAGGTCAGACTCTCGACGTGCCCTCTCATAACAAGTGAA 1252 Query 1215 GCCGTGAAGAAACTGGGGTTGTGTGGCAATCTTGAGGTGCTCGACTTGGGCAGCTGCAAA 1274 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1253 GCTGTGAAGAAACTGGGGTTGTGTGGCAATCTTGAGGTGCTCGACTTGGGCAGCTGCAAA 1312 Query 1275 AGTATATCAGATTCTTGCCTCAACTCTGTTTCAGCCCTCAGAAAGTTAACGTCTCTGAAT 1334 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1313 AGTATATCAGATTCTTGCCTCAACTCTGTTTCAGCCCTCAGAAAGTTAACTTCTCTGAAT 1372 Query 1335 CTCGCAGGAGCTGATGTAACCGATAGTGGCATGCTTGCACTTGGTAAATCAGATGTTCCC 1394 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1373 CTCGCTGGAGCTGATGTAACCGATAGTGGCATGCTTGCACTTGGTAAGTCAGATGTTCCC 1432 Query 1395 ATCACGCAACTGTCTCTCCGCGGCTGTAGGAGAGTCAGTGACAGAGGAATAT-CTCATCT 1453 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1433 ATCACGCAACTGTCTCTCCGCGGCTGTAGGAGAGTCAGTGACAGAGGAATATCCT-ATCT 1491 Query 1454 ATTAAACAATGAAGGAACAATCAGCAAAACATTATCAACACTTGATCTCGGTCACATGCC 1513 || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1492 GTTGAACAATGAAGGAACAATCAGCAAAACATTGTCAACACTTGATCTCGGTCATATGCC 1551 Query 1514 AGGAATCTCAGACAGAGCCATCCACACAATCACACACTGTTGCAAGGCTTTAACAGAGCT 1573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1552 AGGAATCTCAGACAGAGCCATCCACACAATCACACACTGTTGCAAGGCTTTAACAGAGCT 1611 Query 1574 GAGTATCAGGAGTTGCTTTCACGTAACAGATTCTTCGATAGAGTCGCTGGCTACAAGGGA 1633 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 1612 GAGTATCAGGAGTTGCTTTCACGTAACAGATTCTTCGATAGAGTCCCTGGCTACATGGGA 1671 Query 1634 AAGACAAGCAGAGGGAGGAAGCAAACAATTGAGGAAGCTCAATGTCCATAACTGTGTGAG 1693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1672 AAGACAAGCAGAGGGAGGAAGCAAACAATTGAGGAAGCTCAATGTCCATAACTGTGTGAG 1731 Query 1694 CTTAACGACTGGAGCTCTGAGATGGTTAAGCAAGCCGTCTTTCGCGGGTCTGCATTGGCT 1753 |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1732 CTTAACTACTGGAGCACTGAGATGGTTAAGCAAGCCGTCTTTTGCGGGTCTGCATTGGCT 1791 Query 1754 CGGATTAGGACAAACACGATTCGCTGGTCGCAAAGAGACGGTTACAGCTACGATTTGTGG 1813 |||| | ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| Sbjct 1792 CGGAATGGGACAAACACGATTCGCGGGTCGAAAAGAGACGGTTACAGCTATGATTTGTGG 1851 Query 1814 ACAGAGGCCATGGCTCACGTTGTGCTTTGATGGATGTGAGCTTGGATGCTATGATGGTTG 1873 ||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 1852 ACAGAGGCCGTGGCTCACGTTGTGCTTCGATGGATGTGAGCTTGGATGCTCTGATGGTTG 1911 Query 1874 GGAATTCCACACGCCACAACGCCACTGAAGAACTCAATTGTCTCACTAGTTCATGTATTG 1933 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1912 GGAATTCCACACGCCACAACGCCACTGAAGAACTCA-TTGTCTCACTAGTTCATGTATTG 1970 Query 1934 TATAAAATCGTTCAGAAACATGATTCAGTAGGCTGTGTTAATTT-ATTTAAAC-TTCTTA 1991 |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||| Sbjct 1971 TATAAAATCGTTCAGAAACATGATTCAGTAGGATGTGT-AATTTTATTTAAACCTT-TTA 2028 Query 1992 AAAA 1995 |||| Sbjct 2029 AAAA 2032 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98844873105 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5