BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474626
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55670.1 | Symbols: PSAG | photosystem I subunit G | chr1:20... 1112 0.0
> AT1G55670.1 | Symbols: PSAG | photosystem I subunit G | chr1:20802670-20803449
REVERSE LENGTH=780
Length=780
Score = 1112 bits (602), Expect = 0.0
Identities = 715/766 (93%), Gaps = 22/766 (3%)
Strand=Plus/Plus
Query 1 AGATCATAAATCCAAAACCACTCATTTCTCT-TTCACTGAAAATTTTCTT--AG-AGAAG 56
||||||||||||||||||||||||||| ||| || ||||||| ||||||| || |||||
Sbjct 22 AGATCATAAATCCAAAACCACTCATTTTTCTATT-ACTGAAATTTTTCTTAGAGAAGAAG 80
Query 57 AAGAAGAAGCAAAATGGCCACAAGCGCATCAGCTTTGCTCTCACCAACCACATTCTCCAC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AAGAAGAAGCAAAATGGCCACAAGCGCATCAGCTTTGCTCTCACCAACCACATTCTCCAC 140
Query 117 TGCAATCTCCCACAAAAACCCTAACTCCATCTCATTCCATGGTCTCCGTCCCCTCCGTCT 176
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 141 TGCAATCTCCCACAAAAACCCTAACTCCATCTCATTCCATGGCCTTCGTCCCCTCCGTCT 200
Query 177 CGGTGGCTCCTCCTCCGCCTTACCCAAACTCTCAACCACCTCCGGAAGAAAATCATCCTC 236
|||||||||||||||||| |||||||||| ||||||||| ||| ||||||| |||||
Sbjct 201 AGGTGGCTCCTCCTCCGCCCTACCCAAACTATCAACCACCG--GGA-GAAAATCCTCCTC 257
Query 237 CGCCGTCGTGAGAGCTGAGCTAAGCCCTTCCATCGTCATAAGTCTCAGCACAGGTCTCTC 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 CGCTGTCGTGAGAGCTGAGCTAAGCCCTTCCATCGTCATAAGTCTCAGCACAGGTCTCTC 317
Query 297 CCTCTTCCTTGGCCGTTTCGTCTTCTTCAACTTCCAGAGAGAGAACGTCGCGAAACAAGG 356
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 318 CCTCTTCCTCGGCCGTTTCGTCTTCTTCAACTTCCAGAGAGAGAACGTAGCAAAACAGGG 377
Query 357 CTTACCGGAGCAAAACGGAAAAACCCATTTCGAAGCTGGAGATGATCGTGCTAAGGAATA 416
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 CTTACCGGAGCAGAACGGAAAAACCCATTTCGAAGCTGGAGATGATCGTGCTAAGGAGTA 437
Query 417 CGTCAGCCTCTTGAAATCGAACGATCCAATTGGATTCAACATCGTTGATGTTCTTGCTTG 476
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 438 CGTCAGTCTCTTGAAATCGAACGATCCAATTGGATTCAACATTGTTGATGTTCTTGCTTG 497
Query 477 GGGTTCTATTGGACACATCGTTGCTTACTACATCTTGGCAACTTCCAGCAATGGATACGA 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 498 GGGTTCTATTGGACACATCGTTGCTTACTACATCTTGGCTACTTCCAGCAATGGATACGA 557
Query 537 CCCAAGCTTCTTTGGATGATTCATTTCAATCTCTTT-TCTC-TC---GTATATGTATATG 591
|||||||||||||||||||||| ||||||| || | |||| | |||||||||||||
Sbjct 558 CCCAAGCTTCTTTGGATGATTCGTTTCAATGTCAATCTCTCGTATATGTATATGTATATG 617
Query 592 TTTGACTTGTGTTGCAAGCTATCTAATCTGTTCTCTATCTCTGTTTCTTCATATTCCTCT 651
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 618 TTTGACTTGTGTTGCAAGCTATCTAATCTGTTCTCTATCTCTGTTTCTTC-T-T-C-TGT 673
Query 652 -GTTGTCGTTGTTGTCTAAGACTTGTCCCTCTTTTTGCAAAT-TTCTTATTTCTCCATTT 709
||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 674 TGTTGTTGTTGTTGTCTAAGACTTGTCCCTCTTTTTGCAAATGTT-TTATTTCTCCATTT 732
Query 710 AAAAAGATTGGTTTGCAGAGTTTCA-A-GAAGAACATAAAAGTATA 753
| ||||||||||||||||||||| | | ||||||||||| ||||||
Sbjct 733 ACAAAGATTGGTTTGCAGAGTTTTATAAGAAGAACATAATAGTATA 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5