BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474672
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56050.1 | Symbols: | GTP-binding protein-related | chr1:20... 2211 0.0
> AT1G56050.1 | Symbols: | GTP-binding protein-related | chr1:20963719-20966341
FORWARD LENGTH=1500
Length=1500
Score = 2211 bits (1197), Expect = 0.0
Identities = 1313/1369 (96%), Gaps = 7/1369 (1%)
Strand=Plus/Plus
Query 1 TTTAGAGCTGAGAGGTTGAGAAAATTAGTACGATGGCGAGAGCAGCTTGTACCAGTGTCG 60
||| ||||||||||| |||||||||||| || ||||||||||||||||||| ||||||||
Sbjct 43 TTTTGAGCTGAGAGGCTGAGAAAATTAGCACCATGGCGAGAGCAGCTTGTAGCAGTGTCG 102
Query 61 TCACGGCTTTGGCTTTGTTACCGTCAAAGTCTC-TCTTATGTAGAAACCAGTTGTTATTC 119
|||||||| ||||||||||||| || ||||||| || | |||||||||||||| ||||||
Sbjct 103 TCACGGCTATGGCTTTGTTACCCTCTAAGTCTCTTC-TCTGTAGAAACCAGTTATTATTC 161
Query 120 TCCGGTAATTCCAAGTTCGTAGGAGTTTTGACTCTCCAGAAGCGATGCTTTGCCTCCAAA 179
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 162 TCCGGTAATTCCAAGTTCGTCGGAGTTTTGACTCTCCAGAAGCGATGCTTTTCCTCCAAA 221
Query 180 GTCAGCATGAGTTTGAAAGCTGGAATCGTCGGTCTTCCTAACGTTGGCAAGTCTACTCTT 239
|| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 222 GTAAGCATGAGTTTGAAAGCTGGTATCGTCGGTCTTCCTAACGTCGGAAAGTCTACTCTT 281
Query 240 TTTAACGCCGTCGTTGAGAATGGAAAGGCTCAAGCTGCTAATTTTCCATTTTGTACGATT 299
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 282 TTTAACGCCGTCGTTGAGAATGGAAAGGCTCAAGCTGCTAATTTTCCCTTTTGTACGATT 341
Query 300 GAGCCTAATGTTGGTATTGTTGCTGTTCCTGATTCGCGTCTTCAAGTGCTTTCCAAGCTT 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 342 GAGCCTAATGTGGGTATTGTTGCTGTTCCTGATTCGCGTCTTCAAGTGCTTTCTAAACTT 401
Query 360 AGTGGTTCTCAGAAAACGGTTCCTGCATCCATTGAGTTCGTGGACATTGCTGGTCTTGTT 419
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 402 AGTGGTTCTCAGAAAACGGTTCCTGCTTCTATTGAGTTTGTGGACATTGCTGGTCTTGTC 461
Query 420 AAGGGTGCTAGTCAAGGCGAAGGTTTAGGCAATAAGTTCTTATCTCACATCAGAGAAGTT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 AAGGGTGCTAGTCAAGGCGAAGGTTTAGGCAATAAGTTCTTATCTCACATCAGAGAAGTT 521
Query 480 GATTCCATCCTCCAGGTGGTGCGATGTTTTGAGGACAATGACATTATTCATGTGAATGGC 539
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 522 GATTCCATCCTCCAGGTGGTGAGATGTTTTGAGGACAATGACATTATTCATGTGAATGGT 581
Query 540 AAAGTTGATCCCAAGTCTGACATTGATGTCATCAATCTCGAGCTTATTTTCTGCGACTTG 599
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AAAGTTGATCCAAAGTCTGACATTGATGTCATCAATCTCGAGCTTATTTTCTGCGACTTA 641
Query 600 GATCAGATTGGTAAAAGGATCGAGAGACTTAAGAAAGGGAAGGCTAAGGATTCACAATCC 659
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 642 GATCAGATTGGTAAAAGGATCGAGAGACTAAAGAAAGGGAAGGCTAAGGATTCACAATCC 701
Query 660 AAAAAT-AAGGAGGAAGCTGAAAAATCTGCTTTGGAAAGAATTCAGGAAGCTCTTCTGGA 718
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 -AAAGTCAAGGAGGAAGCTGAAAAATCTGCTTTGGAAAGAATTCAGGAAGCTCTTCTGGA 760
Query 719 TGGAAAACCTGCACGTTCAGTTGCATTGTCCGACCTCGAGATGGAAGTTGTAAAGCATCT 778
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 761 AGGAAAACCTGCACGGTCAGTTGCATTGTCCGATCTCGAGATGGAAGTTGTAAAGCATCT 820
Query 779 CTGCTTGCTTACAATGAAGCCTATGATCTATGTGGCAAATGTTGCTGAAACTGATCTTGC 838
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 821 CTGCTTGCTTACAATGAAACCTATGATCTACGTGGCAAATGTTGCTGAAACTGATCTTGC 880
Query 839 TGAGCCAGAGAAGAATGCTTACGTTGAAGAAGTGAAGGGTCTTTCTTCTGATTTGCAGTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TGAGCCAGAGAAGAATGCTTACGTTGAAGAAGTGAAGGGTCTTTCTTCTGATTTGCAGTC 940
Query 899 TGGACATGTGGTTGTTTCAGCACAGGTTGAGTCTGAGCTAACCGAACTTCCTCTTGAAGA 958
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 941 CGGACATGTAGTTGTTTCAGCACAGGTTGAGTCAGAGCTAACCGAACTTCCTCTTGAAGA 1000
Query 959 ACGCACAGAATATTTGAACTCTCTAGGTGTCAGTGAAAGTGGTCTCGGGAACCTTATCAG 1018
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1001 ACGCACAGAATATTTGAACTCTCTTGGTGTCAGTGAAAGTGGCCTCGGGAACCTTATCAG 1060
Query 1019 GGCAACATACAGCCTGCTAGGTTTGCAGACATATTTCACTTCTGGTGAAAAGGAAACAAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GGCAACATACAGCCTGCTAGGTTTGCAGACATATTTCACTTCTGGTGAAAAGGAAACAAG 1120
Query 1079 AGCATGGACAATACAAGCAGGCATGACTGCACCACAAGCTGCTGGCGTCATTCATTCTGA 1138
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AGCATGGACAATACACGCTGGCATGACTGCACCACAAGCTGCTGGCGTCATTCATTCTGA 1180
Query 1139 CTTTGAGAAAGGTTTTATTAGAGCTGAGACTGTTGCGTATGAAGATTTTGTCACTGCTGG 1198
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1181 CTTTGAGAAAGGTTTTATTAGAGCTGAGACTGTTGCATATGAAGATTTTGTCACTGCTGG 1240
Query 1199 ATCTCTAGCAGCAGCAAGGGAGAAAGGACTTCTGAGATCAGAGGGTAAAGAGTACATTGT 1258
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1241 ATCTATAGCAGCAGCAAGGGAGAAAGGACTTTTGAGATCAGAGGGTAAAGAGTACATTGT 1300
Query 1259 TAAAGAAGGAGATGTGATGCTTTTCCGCTTCAACGTATAGCATAATAACCCCGAGATCTC 1318
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1301 TAAAGAAGGAGATGTGATGCTTTTCCGCTTCAACGTATAGCATAA---CCCTGAGATCTC 1357
Query 1319 AATCACTTCTTCACAGAACACCAAAGGTTGTGTTTCTGCACGGCTTTTA 1367
||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 1358 AATCACTTCTTCACAGAACACGACAGGTTGTGTTTCTGCGCGGCTTTTA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67318930845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5