BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474675 Length=1124 Score E Sequences producing significant alignments: (Bits) Value AT1G56080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1639 0.0 > AT1G56080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 196 Blast hits to 193 proteins in 50 species: Archae - 2; Bacteria - 0; Metazoa - 9; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). | chr1:20974161-20976291 REVERSE LENGTH=1305 Length=1305 Score = 1639 bits (887), Expect = 0.0 Identities = 1052/1127 (93%), Gaps = 30/1127 (3%) Strand=Plus/Plus Query 1 AAAAAGTGCGAATCTTCCAATAAAAACACGCCACGTAGTTTATTTGGGCAGCCGAAGATC 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 AAAAAGTGCGAATCTTCCAATAAAAACACGCCACGTAGTTTATTTAGGCAGCCGAAGATC 60 Query 61 CCGAGAGACCTTTTTCGAGCAATGGAGTCTCAAAGCAGCGGTGACTTCAGCCTCTCCGAC 120 ||||| | || ||| || || |||||||||| |||||||||||| |||||||||| Sbjct 61 CCGAG-GGCC-CTTT---GCGAT---GTCTCAAAGCGGCGGTGACTTCAACCTCTCCGAC 112 Query 121 GAGATTCTCGCCGTGATTCCCACCGACCCTTATGATCAACTCGATCTCGCCAGGAAGATC 180 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 113 GAGATTCTCGCCGTGATTCCCACCGACCCTTATGATCAACTCGACCTCGCCAGGAAGATC 172 Query 181 ACTTCCATGGCCATAGCTTCGAGGGTTTCGAATCTGGAATCACAAGTCTCCGGCTTGAGA 240 ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 173 ACTTCCATGGCTATCGCTTCAAGGGTTTCGAATCTGGAATCTCAAGTCTCCGGCTTGAGA 232 Query 241 CAGAAGCTTCTTGAGAAAGATCGGCTTGTCCGTGAACTTGAAGACAGAGTCTCTTCCTTT 300 ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| Sbjct 233 CAGAAGCTTCTTGAGAAGGATCGGCTTGTTCATGAACTTGAAGACAGAGTCTCTTCCTTT 292 Query 301 GAAAGACTTTACCATGAGGCTGACTCTACTTTGAAGAATGTTGTTGATGAAAATATGAAA 360 ||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||| Sbjct 293 GAAAGACTTTACCATGAAGCTGACTCGAGTTTGAAGAATGTTGTCGATGAAAATATGAAA 352 Query 361 CTAACTCAAGAACGAGATTCACTGGCTATCACTGCGAAGAAACTCGGTCGTGATTTTGCA 420 || ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 353 CTGACTCAAGAACGAGATTCACTGGCAATCACTGCGAAGAAACTCGGTCGTGATTATGCA 412 Query 421 AAGTTGGAAGCATTCAAGAGACAATTGATGCAGTCATTGAATGATGACAATCCATCTCAA 480 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 413 AAGTTGGAAGCATTCAAGAGACAATTGATGCAGTCATTGAATGATGATAATCCATCTCAA 472 Query 481 ACTGAGACAGCTGATGTCAGAGTGGTTCCTCGAGGCAAAGATGAGAATTCGAATGGCTTA 540 |||||||| |||||||||||| |||||||||||||||||||||||||||| || | Sbjct 473 ACTGAGACTGCTGATGTCAGAATGGTTCCTCGAGGCAAAGATGAGAATTC-AA------A 525 Query 541 TCGGCGCACGGTTCCTACTCAAACAACCAAGGTTTAAGTGAAGCGAGGCAAAGACAGTCT 600 | | | | |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 526 T--G-G-A----TCCTACTCAAACAATGAAGGTTTAAGTGAAGCGAGGCAAAGACAGTCT 577 Query 601 ATGACTCTGCAATTCTCTCCCG-GTTTTACACCAAGCGGAACACCAAAGATCTTATCTAC 659 ||||||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 578 ATGACTCCGCAGTTCTCTCCCGCG-TTTACACCAAGCGGAACACCAAAGATCTTATCTAC 636 Query 660 TGGTGCTTCTCCGAGAAGCTACTCTGCTGCTTCATCGCCAAAGCTATTCTCTGGAGCTGC 719 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 637 TGCTGCTTCTCCGAGAAGCTACTCTGCTGCTTCATCGCCAAAGCTATTCTCTGGAGCTGC 696 Query 720 ATCCCCAACAACTTCACATTATGATATACGTATGTGGTCTTCATCAAGCCAGCAGTCTTC 779 ||| |||||| |||||||||||||||||||||||||||||||| | |||||||| ||||| Sbjct 697 ATCTCCAACATCTTCACATTATGATATACGTATGTGGTCTTCAACTAGCCAGCAATCTTC 756 Query 780 AGTAGCAAACTCTCCTCCTCGGTCGCATTCTACTTCAGCTCGCCATCCGCGGATTGATGG 839 |||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||||| Sbjct 757 AGTAGCAAACTCTCCTCCACGCTCGCATTCTGTTTCAGCTCGGCATCCGCGGATTGATGG 816 Query 840 GAAAGAATTCTTTAGACAAGCCAGGAGCCGTTTGTCTTACGAACAGTTCAGTGCATTCCT 899 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 817 GAAAGAGTTCTTTAGACAAGCCAGGAGCCGTTTGTCTTACGAACAGTTCAGTGCATTCCT 876 Query 900 GGCTAACATCAAGGAACTAAACGCTCGGAAGCAGAGCCGCGAGGAAACATTACAGAAAGC 959 |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| Sbjct 877 GGCTAACATCAAGGAACTTAACGCCCGGAAGCAGGGCCGCGAGGAAACATTACAGAAAGC 936 Query 960 AGAGGAAATATTTGGAAAGGAAAACAATGATCTATACATATCGTTTAAGGGACTTCTCAC 1019 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 937 AGAGGAAATATTTGGAAAGGAAAACAATGATCTTTACATATCCTTTAAGGGACTTCTCAC 996 Query 1020 AAGTGGGCGTTGAAACAAAAAC--ACCAACTTCTAAGCTTTCTTTTCATGACCAATAATT 1077 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 997 AAGTGGGCGTTGAAACAAAAACTCACCAACTTCTAAGCTTTCTTTTCATGACCAAT--T- 1053 Query 1078 AGTCATGACTGATTTCAAATTTGTAAAACCTCTTTAACCATAGAAGA 1124 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1054 AGTCATGACTGATTTCAAATTTGTAAAACCTCTTTAACCATAGAAGA 1100 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55120198410 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5