BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474686
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56170.1 | Symbols: HAP5B, ATHAP5B, NF-YC2 | nuclear factor ... 1147 0.0
> AT1G56170.1 | Symbols: HAP5B, ATHAP5B, NF-YC2 | nuclear factor
Y, subunit C2 | chr1:21024764-21025883 FORWARD LENGTH=812
Length=812
Score = 1147 bits (621), Expect = 0.0
Identities = 717/761 (94%), Gaps = 16/761 (2%)
Strand=Plus/Plus
Query 207 GATAGCTTAGCAATGGAGCCGTCAGAAGAGGGT------CAACAGCAACAGGGAATGATG 260
||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||
Sbjct 35 GATAGCTTAGCAATGGAGCAGTCAGAAGAGGGTCAACAGCAACAGCAACAGGGAGTGATG 94
Query 261 GATTATGTACCTCCTCATGCTTATCAGAGTGGGCCAGTAAATGCTGCGTCTCATATGGCA 320
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 95 GATTATGTACCTCCTCATGCTTATCAGAGTGGGCCAGTAAATGCAGCTTCCCATATGGCA 154
Query 321 TTCCAACAAGCTCACCACTTCCACCACCACCACCATCAGCAACAACAGCAGCAGCAGCTT 380
|||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||
Sbjct 155 TTCCAACAAGCTCACCACTT---CCACCACCACCATCAGCAGCAACAACAGCAGCAGCTT 211
Query 381 CAGATGTTCTGGGCTAACCAAATGCAAGAGATCGAGCATACCACTGATTTCAAGAACCAC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CAGATGTTCTGGGCTAACCAAATGCAAGAGATCGAGCATACCACTGATTTCAAGAACCAC 271
Query 441 ACCCTTCCGCTGGCCCGCATCAAGAAGATCATGAAAGCTGATGAAGATGTGAGGATGATC 500
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 ACCCTTCCCCTAGCCCGCATCAAGAAGATCATGAAAGCTGATGAAGATGTGAGGATGATC 331
Query 501 TCTGCGGAGGCTCCTGTCATTTTTGCCAAGGCCTGTGAGATGTTCATTTTGGAGCTCACG 560
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 332 TCTGCGGAGGCTCCTGTGATTTTTGCCAAGGCCTGTGAGATGTTCATTTTGGAGCTCACT 391
Query 561 CTACGTGCTTGGATCCACACCGAGGAGAACAAGAGGAGGACCTTGCAGAAGAACGACATC 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 CTACGTGCTTGGATCCACACCGAGGAGAACAAGAGGAGGACCTTGCAGAAGAACGACATC 451
Query 621 GCCGCTGCCATTTCCAGGACCGACGTGTTTGATTTCCTCGTGGACATAATCCCGAGGGAC 680
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 452 GCCGCTGCCATTTCCAGGACCGACGTGTTTGATTTCCTTGTGGACATAATCCCGAGGGAC 511
Query 681 GAGGTGAAAGAAGAAGGTTTAGGGGTGACGAAAGGGACCATACCATCCGCGGTGGGTTCT 740
||| ||||||||||||||||||| ||||| ||||||||||||||||| | |||||||||
Sbjct 512 GAGCTGAAAGAAGAAGGTTTAGGCGTGACCAAAGGGACCATACCATCGGTGGTGGGTTCC 571
Query 741 CCGCCATACTATTACATGCAGCAACAGGGGATGATGCAACACTGGCCCCAGGAGCAACAC 800
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 572 CCGCCATACTATTACTTGCAACAACAGGGGATGATGCAACACTGGCCCCAGGAGCAACAC 631
Query 801 CATGATGACTCTTAAAACTTTTCTCCTTTCGTTTGTTTGGTTGTATCGTAGTAAGGTAGC 860
| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 632 CCTGATGAGTCTTAAAACTTTTCCCCTTTCGTTTGTTTGGTTGTATCGTAGTAAGGTAGC 691
Query 861 TCTGCTCTGCTGGGAACCATTTCTATTGTGTTCTGTAATGACATGTTAGTCACCAGATGA 920
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 692 TCTGCTCTGCTGGGAACCATTTCTATTGTGTTCTGTAATGACATGTTAGT-A-----T-A 744
Query 921 TCTACAGTCTATATCTATGTCAATGTAGTTCCTGTTCTCAT 961
|| ||||||||||||||| ||||| |||| ||||||||||
Sbjct 745 TCCCCAGTCTATATCTATGGCAATGCAGTTTCTGTTCTCAT 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5