BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474687
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56180.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 2150 0.0
> AT1G56180.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1);
Has 436 Blast hits to 436 proteins in 83
species: Archae - 0; Bacteria - 153; Metazoa - 0; Fungi - 0;
Plants - 160; Viruses - 0; Other Eukaryotes - 123 (source:
NCBI BLink). | chr1:21025904-21028064 REVERSE LENGTH=1526
Length=1526
Score = 2150 bits (1164), Expect = 0.0
Identities = 1311/1380 (95%), Gaps = 18/1380 (1%)
Strand=Plus/Plus
Query 1 GGCGAGAACCACCTCTAATGGCTTTATCTCCGTCGTCTCCTCCATGTCTCAGATCTCTTT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCGAGAAGCACCTCTAATGGCTTTATCTCCGTCGTCTCCTCCATGTCTCAGATCTCTTT 60
Query 61 CG-C--CTTTTTCTCGCCGAATTGGTGGCTTCCTTGTTCCACGCGTACAGTCTCTAGCCT 117
|| | |||||||||||| || | |||||||||||||||||||||||||||||||| ||
Sbjct 61 CGCCTTCTTTTTCTCGCC-AAAT--TGGCTTCCTTGTTCCACGCGTACAGTCTCTAGTCT 117
Query 118 TTGGTAGCGTACGGAGGCATGAGCTGAGGAGGCCGAGCGCGCTCAGGGAATGGCGGGAGT 177
|||||||||| |||| ||||||| || ||||||||||||| |||||||||||||||||||
Sbjct 118 TTGGTAGCGTCCGGAAGCATGAGTTGCGGAGGCCGAGCGCACTCAGGGAATGGCGGGAGT 177
Query 178 ACGAAGATGCTGTGAGGAGAAAAGATCTCGCCGGGGCTCTTAGATTCCTCAAATCTATAG 237
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 ACGAAGATGCTGTGAAGAGAAAAGATCTCGCCGGGGCTCTTAGATTCCTCAAATCTATTG 237
Query 238 AAAATGATGAAGAGCGTGATGCGGTTGAATCTATTGTCGCGGCTAAGTTAAGCGGTTTGG 297
||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct 238 AAAATGATGAACAGCGTGATTCGGTTGAATCTATTGTCACGGCTAAGTTAAGCGGCTTGG 297
Query 298 GAGGTCTTGGATTGGAGAGGGATTGGCAAGTTTTAGATGCGTGTTTGAATGCAGATGATA 357
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAGCTCTTGAATTGGAGAGGGATTGGCAAGTTTTAGATGCGTGTTTGAATGCAGATGATA 357
Query 358 TGAGACTTGTTGGAAATGCATTTAGGTTTCTTAAGGAGAGAGGTCTATTGGCCAACTTCG 417
||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 358 TGAGACTTGTTGGAAGTGCGTTTAGGTTTCTTAAGGAGAGAGGTCTTTTGGCCAACTTCG 417
Query 418 GCAAATTCAGCAGTATTGTTTTGGAGGGAACAAGAGAGGTAACACCTACTGTTCTGAAGT 477
||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 418 GCAAATTCACCAGTATTGTTTTGGAAGGAACAAGAGAGGTAACACCTACTGTCCTGAAGT 477
Query 478 CTGCAACTGGCTTGGAAGTGACTAAGCTTTCACCAAAGAAATGGGGACTTTCTGGTGGCT 537
||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 478 CTGCAACTGGCTTGGAAGTGACTAAACTTTCACCGAAGAAGTGGGGACTTTCTGGTGGTT 537
Query 538 CTAGCATTGCTCTGGCTGCTTTTCTGGGTGGAGTCTCCTATCTTCTTTCTCAGGAGATTG 597
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 538 CTAGCATTGCTCTGGCTGCTTTGCTGGGTGGAGTCTCCTATCTTCTTTCACAGGAGATTG 597
Query 598 ATGTGCGGCCAAACCTTGCTGTCATTTTGGGTCTAGCTTATATGGATTCTGTTTTTCTTG 657
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 598 ATGTGCGGCCAAACCTTGCTGTCATTTTGGGTCTAGCTTATTTGGATTCCGTTTTTCTTG 657
Query 658 GCGGTACCTGTTTAGCCCAAGTATCATGCTACTGGCCTCCTCATAAGCGTAGAATCGTAG 717
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 GTGGTACCTGCTTAGCCCAAGTATCATGCTACTGGCCTCCACATAAGCGTAGAATCGTAG 717
Query 718 TTCACGAAGCGGGTCATCTTCTTGTTGCATACCTCATGGGCTGCCCAATCCGTGGTGTGA 777
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTCACGAAGCTGGTCATCTTCTTGTTGCATACCTCATGGGCTGCCCAATCCGTGGTGTGA 777
Query 778 TATTGGATCCGATTGTTGCCATGCAAATGGGGGTTCAAGGCCAGGCTGGAACCCAATTCT 837
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TATTGGATCCGGTTGTTGCCATGCAAATGGGGGTTCAAGGCCAGGCTGGAACCCAATTCT 837
Query 838 GGGATCAAAAGATGGAGAGTGAGATTGCTGAGGGACGACTTAGCGGTAGCTCATTTGATA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGGATCAAAAGATGGAGAGTGAGATTGCTGAGGGACGACTTAGCGGTAGCTCATTTGATA 897
Query 898 GGTATAGCATGGTACTATTTGCTGGTATTGCAGCTGAAGCGCTAATTTATGGTGAGGCTG 957
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 GGTATAGCATGGTACTATTTGCTGGTATTGCAGCTGAAGCGCTAGTTTATGGTGAGGCTG 957
Query 958 AGGGTGGGGAGAATGATGAAAATCTGTTCAGGAGCATCTCAGTCCTTCTGGAACCACCGT 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGGGTGGAGAGAATGATGAAAATCTGTTCAGGAGCATCTCAGTCCTTCTGGAACCACCGT 1017
Query 1018 TATCTGTGGCTCAGATGTCGAATCAAGCCAGGTGGTCTGTTCTACAATCTTACAATCTAC 1077
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TATCCGTAGCTCAGATGTCGAATCAAGCCAGGTGGTCTGTTCTACAATCTTACAATCTAC 1077
Query 1078 TCAAGTGGCACAAGGCGGCACATAGGGCCGCTGTTGAAGCTCTCCAAGTGGGAAGTCCTC 1137
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCAAGTGGCACAAGGCAGCACATAGGGCCGCTGTTGAAGCTCTCCAAGTGGGAAGTCCTC 1137
Query 1138 TTAGCATTGTGATTAGAAGGATTGAGGAAGCCATGTCTTCAAGCAAATGACTGAAGTATC 1197
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1138 TTAGCATTGTGATTAGAAGGATTGAGGAAGCCATGTCTTCAAGCAAATGATTGAAGCACC 1197
Query 1198 AGCGTTTTCTGTAATTTATTACTAATACGGGCAACCCATAAAAAC----CTCATTTGGAA 1253
||| |||||||||||||||||||||||||| || |||||||||| |||||||||||
Sbjct 1198 AGCATTTTCTGTAATTTATTACTAATACGGACAGCCCATAAAAAAAAAACTCATTTGGAA 1257
Query 1254 TGTATGGAGACGGAAGCAGATACGCTCTCG--AT------ATATAAACCACCTGACTGCA 1305
|| |||||||| |||||||||| ||||||| || ||||||||||||||||||||
Sbjct 1258 TGCATGGAGACCGAAGCAGATAAGCTCTCGGTATCTCGGTATATAAACCACCTGACTGCA 1317
Query 1306 ACTGGAATGGCGAGAAGGGACTTGTATCTTTGGATGCATGTTCAAGTAAGTTAAGGTTTT 1365
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1318 ACTGGAATGGCGAGAAGGGACTTGTATCTTTGGATCCATGTTCAAGTAAGTTAAGGTTTT 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5