BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474689 Length=1760 Score E Sequences producing significant alignments: (Bits) Value AT1G56190.1 | Symbols: | Phosphoglycerate kinase family protei... 2712 0.0 AT3G12780.1 | Symbols: PGK1 | phosphoglycerate kinase 1 | chr3:... 1602 0.0 > AT1G56190.1 | Symbols: | Phosphoglycerate kinase family protein | chr1:21028238-21030649 FORWARD LENGTH=1797 Length=1797 Score = 2712 bits (1468), Expect = 0.0 Identities = 1678/1775 (95%), Gaps = 31/1775 (2%) Strand=Plus/Plus Query 1 ATGATCTTTGTGAATGTGGCCCA-GATTGTATGCAGA-GGAAGGTGAAAGAATTATGATA 58 ||||||||||||||||||| | | ||||||| ||||| |||||| | ||||||||||||| Sbjct 1 ATGATCTTTGTGAATGTGGGCAACGATTGTAAGCAGAGGGAAGGCG-AAGAATTATGATA 59 Query 59 ACCTCTCATCAACGATAAGACAAAATCCAGAAACTTGTAATATCATCCAATCCTCTCACT 118 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 60 ACCTCTCATCAACGATAAGACAAAATCCATAAACTAGTAATATCATCCAATCCTCTCA-- 117 Query 119 CTTCTTCCTTATTCTCTCACTTTCCCTCTCTCTACCCGTCGACTTCACATGGCTTCCACC 178 |||||||||||||| ||||||||| ||||| ||| | || |||||||||||||||||||| Sbjct 118 CTTCTTCCTTATTCCCTCACTTTCACTCTCACTATCTGTTGACTTCACATGGCTTCCACC 177 Query 179 GCCGCAACTGCAGCTCTTTCGATCATCAAATCCACCGGTGGCGCCGCCTTTACCCGCTCC 238 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 178 GCCGCAACTGCAGCTCTTTCGATCATCAAATCCACCGGTGGCGCCGCCGTTACACGCTCC 237 Query 239 TCCCGCGCCTCCTTCT-TACCCA-TCCCATCCACCGCTGTCTCCGCACGTCGCCTCGGCT 296 |||||||||||||| | || || |||| ||||| ||||||||||||||||||| |||| Sbjct 238 TCCCGCGCCTCCTT-TGGACACATTCCC-TCCACATCTGTCTCCGCACGTCGCCTTGGCT 295 Query 297 TCTCCGCCGTCGTTGACTCGCGTTTCTCCGTCCACGTGGCTTCCAAGGTCCAGTCCGTGC 356 ||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||| Sbjct 296 TCTCCGCCGTCGTTGACTCTCGTTTCTCGGTCCACGTGGCGTCCAAGGTCCACTCCGTGC 355 Query 357 GCGGAAAGGGAACCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGACTT 416 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 356 GCGGAAAGGGCGCCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGAATT 415 Query 417 CTGCGGATTTGAAGGGTAAGAAGGTGTTTGTTAGAGCTGATCTCAATGTACCTCTCGATG 476 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 416 CTGTAGATTTGAAGGGGAAGAAGGTGTTTGTTAGAGCTGATCTCAATGTACCTCTCGATG 475 Query 477 ACAACCAGAATATCACTGACGACACTAGAATCAGAGCTGCCATTCCCACCATTAAGTTTT 536 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 476 ACAACCAGAATATCACTGACGACACTAGAATCAGAGCCGCCATTCCCACCATCAAGTTTT 535 Query 537 TGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAAGGTGTCA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 536 TGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAGGGTGTCA 595 Query 597 CTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCCAGATTGTCAGAGCTCCTTGGTATTGAGG 656 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 596 CTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCCAGATTATCAGAGCTCCTTGGTATTGAGG 655 Query 657 TCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAAGCTTGGTGGCTTCCCTTCCTG 716 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 656 TCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAACCTTGGTGGCTTCCCTTCCTG 715 Query 717 AAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAAGAAGAGAAGAACGAAC 776 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 716 AAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAGGAAGAGAAGAACGAAC 775 Query 777 CTGAGTTTGCAAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCTTTCGGGA 836 |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 776 CTGATTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCGTTCGGGA 835 Query 837 CTGCTCATAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGTTG 896 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 CTGCTCACAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGTTG 895 Query 897 CTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTGGGTGCGGTTTCAAACCCAAAGA 956 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 896 CTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTTGGTGCGGTTTCAAACCCAAAGA 955 Query 957 GACCATTTGCTGCCATTGTGGGAGGTTCAAAGGTCTCATCTAAGATTGGAGTTATCGAAT 1016 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 956 GACCATTTGCTGCCATTGTGGGAGGTTCCAAGGTCTCATCTAAGATTGGAGTTATCGAAT 1015 Query 1017 CTCTTCTTGAGAAATGTGACATTCTTCTGCTTGGTGGTGGAATGATCTTTACATTCTACA 1076 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1016 CGCTTCTTGAGAAATGTGACATCCTTCTGCTTGGTGGTGGAATGATCTTTACATTCTACA 1075 Query 1077 AGGCGCAAGGTCTTTCTGTTGGCTCTTCCCTTGTTGAAGAAGACAAGCTTGAATTGGCTA 1136 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1076 AGGCGCAAGGTCTTTCCGTTGGCTCCTCCCTTGTTGAAGAAGACAAGCTTGAATTGGCTA 1135 Query 1137 CATCACTCCTTGCTAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATGTTG 1196 || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 CAACACTCCTTGCCAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATGTTG 1195 Query 1197 TGATTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCAGCTTCAGCCATTC 1256 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1196 TGATTGCTGACAAGTTCGCTCCTGATGCCAACAGCAAGATTGTGCCAGCATCAGCCATTC 1255 Query 1257 CTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACTTTCAACGAAGCTT 1316 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1256 CTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACATTCAACGAAGCTC 1315 Query 1317 TGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAAAAGT 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 TGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAAAAGT 1375 Query 1377 TTGCACAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGTAAAAAGGGAGTGA 1436 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1376 TTGCAAAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGCAAAAAGGGAGTGA 1435 Query 1437 CAACGATAATAGGAGGAGGAGATTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAGCAGGAG 1496 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1436 CAACGATAATAGGAGGAGGAGACTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAGCAGGAG 1495 Query 1497 TCATGAGTCACATCTCCACAGGTGGTGGAGCCAGTTTGGAGCTCTTGGAAGGCAAAGTGC 1556 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1496 TCATGAGTCACATCTCCACAGGTGGTGGTGCCAGTTTGGAGCTCTTGGAAGGCAAAGTGC 1555 Query 1557 TTCCCGGTGTGGTCGCCCTTGATGAAGCAACGCCAGTCACGGTTTAACAAAATTCTCTTT 1616 |||||||||| ||||| ||||||||||||||||||||||| ||||||||| || |||||| Sbjct 1556 TTCCCGGTGTCGTCGCTCTTGATGAAGCAACGCCAGTCACTGTTTAACAACAT-CTCTTT 1614 Query 1617 ATTATTATTACACCTGAAGGGACCTC---AA-TGAGTTTCTTCTT---ATTCTGTTGTAA 1669 |||| |||||||||||||| | || ||||||||||||| |||||||||||| Sbjct 1615 ATTA------CACCTGAAGGGACCCCCCTAAATGAGTTTCTTCTTCTTATTCTGTTGTAA 1668 Query 1670 ATCT--GT-TATTGTTGTACCACCAA-TCCATAGAGAGAGGAGAGACTCTTTTTGTCTCA 1725 ||| || | ||||||||||| ||| ||||||||||| | || |||||||||||||||| Sbjct 1669 ATCAAAGTCT-TTGTTGTACCATCAAATCCATAGAGAG-G-AGGGACTCTTTTTGTCTCA 1725 Query 1726 AATAAAATCAAAATCCAATGACTTTCGTTATTTTG 1760 |||||||||||| | || |||| |||||||||||| Sbjct 1726 AATAAAATCAAA-TACAGTGACATTCGTTATTTTG 1759 > AT3G12780.1 | Symbols: PGK1 | phosphoglycerate kinase 1 | chr3:4060971-4063306 REVERSE LENGTH=1768 Length=1768 Score = 1602 bits (867), Expect = 0.0 Identities = 1209/1373 (88%), Gaps = 27/1373 (2%) Strand=Plus/Plus Query 245 GCCT-CCTTCTTACCCA-TCCCATCCACCGCTGTCTCCGCACGTCGC-CTCGGCTTCTCC 301 |||| ||||| | || | |||| || ||| |||| ||||| |||| | || ||||||||| Sbjct 251 GCCTCCCTTC-TGCCAATTCCC-TCTACCTCTGTTTCCGCGCGTC-CTCTAGGCTTCTCC 307 Query 302 GCC-GTCGTTGA--CTCG-CGTTTCTC-CGTCCACGTGGCTTCCAAGGTCCAGTCCGTGC 356 ||| || | || | || |||||||| | ||||||| |||||||| || | || |||| Sbjct 308 GCCACTC-TAGATTCCCGTCGTTTCTCTC-TCCACGTTGCTTCCAAAGTTGAATCGGTGC 365 Query 357 GCGGAAAGGGAACCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGACTT 416 | || ||||||| ||| |||||| || | |||||||||||||| || ||||||||||| | Sbjct 366 GTGGGAAGGGAAGCAGAGGAGTGGTTTCTATGGCGAAGAAGAGCGTCGGAGATCTGACCT 425 Query 417 CTGCGGATTTGAAGGGTAAGAAGGTGTTT-GTTAGAGCTGATCTCAATGTACCTCTCGAT 475 | || ||||||||||| |||||||| ||| || ||||||||||||||||||||||||||| Sbjct 426 CAGCTGATTTGAAGGGGAAGAAGGT-TTTCGTGAGAGCTGATCTCAATGTACCTCTCGAT 484 Query 476 GACAACCAGAATATCACTGACGACACTAGAATCAGAGCTGCCATTCCCACCATTAAGTTT 535 || || |||| |||||||||||| || |||||| | || |||||||| || || |||| | Sbjct 485 GATAATCAGACTATCACTGACGATACCAGAATCCGTGCCGCCATTCCAACGATCAAGTAT 544 Query 536 TTGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAAGGTGTC 595 |||||||| ||||||||||| || ||||||||||||||| ||||||||||||| || ||| Sbjct 545 TTGATTGAAAATGGTGCTAAAGTTATCCTCTCCACTCATCTGGGAAGGCCAAAGGGAGTC 604 Query 596 ACTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCC-AGATTGTCAGAGCTCCTTGGTATTGA 654 || |||||||| || ||||||||||||| |||| || | || ||||| ||||||||||| Sbjct 605 ACCCCAAAGTTTAGTTTGGCTCCTCTTG-TCCCTAGGCTCTCCGAGCTTCTTGGTATTGA 663 Query 655 GGTCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAAGCTTGGTGGCTTCCCTTCC 714 |||| ||||||||||||||||||||| |||||||||||||||||||||||||| || || Sbjct 664 GGTCACGAAAGCTGATGATTGTATTGGCCCAGAAGTGGAAAGCTTGGTGGCTTCTCTACC 723 Query 715 TGAAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAAGAAGAGAAGAACGA 774 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 724 TGAAGGTGGAGTTTTGCTTCTTGAGAACGTCAGGTTTTACAAGGAGGAAGAGAAGAACGA 783 Query 775 ACCTGAGTTTGCAAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCTTTCGG 834 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 784 TCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAATGATGCTTTCGG 843 Query 835 GACTGCTCATAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGT 894 |||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| Sbjct 844 AACTGCTCACAGAGCTCATGCTTCTACCGAAGGAGTCACTAAGTTCTTGAAGCCTTCAGT 903 Query 895 TGCTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTGGGTGCGGTTTCAAACCCAAA 954 |||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||| Sbjct 904 TGCTGGTTTCCTTTTGCAAAAGGAACTGGACTACCTAGTTGGTGCTGTTTCAAACCCAAA 963 Query 955 GAGACCATTTGCTGCCATTGTGGGAGGTT-CAAAGGTCTCATCTAAGATTGGAGTTATCG 1013 |||||||||||| ||||| ||||| |||| |||| |||||||| |||||||||||||| | Sbjct 964 GAGACCATTTGCAGCCATAGTGGGTGGTTCCAAA-GTCTCATCCAAGATTGGAGTTATTG 1022 Query 1014 AATCTCTTCTTGAGAAATGTGACATTCTTCTGCTTGGTGGTGGAATGATCTTTACATTCT 1073 |||| ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||||| Sbjct 1023 AATCGCTTCTGGAGAAGTGTGATATTCTTCTTCTTGGTGGTGGAATGATCTTCACATTCT 1082 Query 1074 ACAAGGCGCAAGGTCTTTCTGTTGGCTCTTCCCTTGTTGAAGAAGACAAGCTTGAATTGG 1133 ||||||| || |||||||| ||||| || ||||||||||||||||||||||||||||||| Sbjct 1083 ACAAGGCACAGGGTCTTTCAGTTGGTTCGTCCCTTGTTGAAGAAGACAAGCTTGAATTGG 1142 Query 1134 CTACATCACTCCTTGCTAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATG 1193 ||||| ||||||||| || |||||||||| |||||||||||| ||||| |||||||||| Sbjct 1143 CTACAGAACTCCTTGCCAAAGCTAAGGCCAAAGGAGTCTCTCTTTTGTTGCCAACAGATG 1202 Query 1194 TTGTGA-TTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCAGCTTCAGCC 1252 |||| | ||||||||||||||||||||||||||||||||||||||||||| || |||| | Sbjct 1203 TTGT-AGTTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCTGCATCAGGC 1261 Query 1253 ATTCCTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACTTTCAACGAA 1312 ||| || || ||||||||| ||||||| ||||||||||| | ||||||||||||||| Sbjct 1262 ATTGAGGACGGATGGATGGGACTGGACATTGGTCCAGACTCTATCAAAACTTTCAACGAA 1321 Query 1313 GCTTTGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAA 1372 ||| |||| || || || |||||||||||||||||||| ||||||||||||||| | ||| Sbjct 1322 GCTCTGGACACAACACAAACAGTCATTTGGAATGGACCTATGGGAGTTTTCGAGATGGAA 1381 Query 1373 AAGTTTGCA-CAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGT-AAAAAGG 1430 |||||||| | ||||| |||||| |||||||||||||||||||||||||| ||||||| Sbjct 1382 AAGTTTGCGGCT-GGAACAGAGGCGATAGCGAATAAACTAGCAGAGCTAAGTGAAAAAGG 1440 Query 1431 GAGTGACAACGATAATAGGAGGAGGAGATTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAG 1490 ||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||| Sbjct 1441 -AGTGACAACGATAATAGGAGGAGGAGACTCAGTGGCTGCAGTGGAGAAAGTAGGAGTAG 1499 Query 1491 CAGGAGTCATGAGTCACATCTCCACAGGTGGTGGAGCCAGTTTGGAGCTCTTGGAAGGCA 1550 ||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| | Sbjct 1500 CAGGAGTCATGAGTCACATCTCCACTGGTGGTGGAGCCAGCTTGGAGCTGTTGGAAGGAA 1559 Query 1551 AAGTGCTTCCCGGTGTGGTCGCCCTTGATGAAGCAA-CGCCAGTCACGGTTTA 1602 |||| |||||||||||| |||||||||||||||||| | |||||||| ||||| Sbjct 1560 AAGTACTTCCCGGTGTGATCGCCCTTGATGAAGCAATC-CCAGTCACTGTTTA 1611 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87047745030 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5