BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474690 Length=571 Score E Sequences producing significant alignments: (Bits) Value AT1G56200.1 | Symbols: emb1303 | embryo defective 1303 | chr1:2... 804 0.0 > AT1G56200.1 | Symbols: emb1303 | embryo defective 1303 | chr1:21030794-21032078 FORWARD LENGTH=715 Length=715 Score = 804 bits (435), Expect = 0.0 Identities = 526/567 (93%), Gaps = 17/567 (3%) Strand=Plus/Plus Query 1 GCTTTTGCCATGGCTATGGCGGCGTCTATCATCCAATCTTCTCCGCTCTCATTCAATAGT 60 ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 50 GCTTTAGCCATGGCTATGGCGGCGTCTATTATCCAATCTTCTCCGCTCTCCTTCAATAGC 109 Query 61 AGCAACGAAAAGCTGCGGATTCATAGTTCAGGATCGCTCGGTGGAATCAAATTG-CAAAA 119 | ||||| ||||| |||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 110 AACAACGCAAAGCCACGGATTCATAGTTCAGGATCGCTCGGCGGAATCAAA-AGCCAAAA 168 Query 120 TAGAGTGTCTCCA-T---T---G--GGATTGAGCTCAGGCCTTGGAAGTAGAAGGCAATC 170 |||||| |||||| | | | ||||| |||||||||||||||||||||||| |||| Sbjct 169 TAGAGTCTCTCCATTGAGTGCGGTTGGATTAAGCTCAGGCCTTGGAAGTAGAAGGAAATC 228 Query 171 TCTTTTGATATGTCACTCAGCTATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGT 230 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 229 TCTTTTGATATGTCACTCAGCCATTAACGCGAAATGCAGTGAAGGACAAACACAGACCGT 288 Query 231 TACTCGGGAGTCACCGACAATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAG 290 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 289 TACTCGGGAGTCACCGACTATAACACAGGCTCCTGTACACTCTAAGGAGAAATCACCAAG 348 Query 291 CCTAGACGATGGAGGAGACGGGTTCCCACCACGAGATGATGGAGATGGAGGTGGTGGAGG 350 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| Sbjct 349 CCTAGACGATGGAGGAGACGGGTTCCCACCGCGAGATGATGGAGATGGTGGTGGAGGAGG 408 Query 351 AGGGGGTGGAGGCAACTGGTCAGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGG 410 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 409 AGGGGGTGGAGGCAACTGGTCGGGTGGGTTCTTCTTCTTTGGTTTTCTGGCCTTCTTGGG 468 Query 411 TCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATAGAAAAT 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 469 TCTATTGAAGGATAAAGAGGGCGAGGAAGATTACCGAGGGAGCAGAAGGCGATA-ATAAT 527 Query 471 ATGA-C-ACAT-TTGGTCAATCTTATTACAGCTACAGGTCTCATTTTGTATCTGTTTCGT 527 ||| | || | ||||| | |||||||||||||||||| ||||||||||||||||||||| Sbjct 528 ATGGGCCAC-TCTTGGTTA-TCTTATTACAGCTACAGGACTCATTTTGTATCTGTTTCGT 585 Query 528 TGAGTGGGGGATGATATGCGTTGTATT 554 ||||||||||||||||||| ||||||| Sbjct 586 TGAGTGGGGGATGATATGCCTTGTATT 612 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27427844262 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5