BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474695 Length=1518 Score E Sequences producing significant alignments: (Bits) Value AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase | chr1:2... 2268 0.0 AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocit... 699 0.0 > AT1G54340.1 | Symbols: ICDH | isocitrate dehydrogenase | chr1:20283480-20286786 FORWARD LENGTH=1571 Length=1571 Score = 2268 bits (1228), Expect = 0.0 Identities = 1304/1340 (97%), Gaps = 8/1340 (1%) Strand=Plus/Plus Query 1 AATTTCACTCGTCGATCA-T---AAGCTCTGCGGGCGAAGATGGAATTCGAGAAGATCAA 56 |||||||||||||||||| | || |||||||||| ||||||||||||||||||||||| Sbjct 1 AATTTCACTCGTCGATCATTACCAACCTCTGCGGGCAAAGATGGAATTCGAGAAGATCAA 60 Query 57 GGTGATCAATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGTTATCTGGAAATT 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGTGATCAATCCCGTTGTTGAAATGGATGGAGACGAAATGACTCGAGTTATCTGGAAATT 120 Query 117 CATCAAAGACAAGCTTATTTTCCCTTTCGTGGAGTTGGATATCAAATACTTTGATCTTGG 176 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 121 CATCAAAGACAAGCTTATTTTCCCTTTCCTGGAGCTGGATATCAAATACTTTGATCTTGG 180 Query 177 ACTGCCTAACCGCGATTTCACTGACGATAAGGTTACTATAGAGAGTGCTGAAGCTACTTT 236 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 181 ACTGCCTAACCGCGATTTCACTGATGATAAGGTTACTATAGAGACTGCTGAAGCTACTTT 240 Query 237 AAAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATGAAGCTCGTGTTAGGGA 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGATGAAGCTCGTGTTAGGGA 300 Query 297 GTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAACGGAACTATAAGGAACATTTTAAACGG 356 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 301 GTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAATGGAACTATAAGGAACATTTTAAACGG 360 Query 357 CACAGTTTTCAGGGAGCCTATCATTTGCAGAAACATTCCTCGTATTGTTCCAGGATGGAC 416 ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| Sbjct 361 CACAGTTTTCAGGGAACCTATCATTTGCAGAAACATCCCTCGTCTTGTTCCAGGATGGAC 420 Query 417 GAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGTATAGAGCCACTGATATCAT 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 421 GAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAGTATAGAGCCACTGATCTCAT 480 Query 477 TGTCAATGAACCAGGAAAACTGAAACTAGTTTTTGAGCCAAGTGGATCTTCTCAGAAAAC 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TGTCAATGAACCAGGAAAACTGAAACTAGTTTTTGAGCCAAGTGGATCTTCTCAGAAAAC 540 Query 537 AGAATTCGAAGTCTTCAATTTCACTGGTGGAGGTGTTGCTTTAGCCATGTATAACACTGA 596 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 541 AGAATTCGAAGTCTTCAATTTCACCGGTGGAGGTGTTGCTTTAGCCATGTATAACACTGA 600 Query 597 TGAGTCTATTCGTGCATTTGCTGAGTCCTCGATGTACACAGCTTACCAGAAAAAGTGGCC 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TGAGTCTATTCGTGCATTTGCTGAGTCCTCGATGTACACAGCTTACCAGAAAAAGTGGCC 660 Query 657 ACTTTACCTCTCCACAAAAAACACCATCCTCAAAATATATGATGGAAGATTCAAGGATAT 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 ACTTTACCTCTCCACAAAAAACACCATCCTCAAAATATATGATGGAAGATTCAAGGATAT 720 Query 717 ATTCCAAGAAGTTTATGAAGCTAATTGGAGATCCAAGTATGAAGCTGCAGGGATATGGTA 776 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 721 ATTCCAAGAAGTTTATGAAGCTAACTGGAGATCCAAGTATGAAGCAGCAGGGATATGGTA 780 Query 777 TGAGCATCGTTTGATAGATGATATGGTTGCATATGCCATGAAAAGTGAGGGGGGTTATGT 836 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 781 TGAGCATCGTTTGATAGATGATATGGTTGCATATGCCATGAAAAGTGAAGGGGGTTACGT 840 Query 837 CTGGGCATGCAAGAATTACGATGGAGATGTACAGAGCGATTTCTTAGCCCAAGGATATGG 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CTGGGCATGCAAGAATTACGATGGAGATGTACAGAGCGATTTCTTAGCCCAAGGATATGG 900 Query 897 ATCTCTGGGAATGATGACGTCGGTGTTGGTTTGTCCTGATGGAAAAACCATTGAAGCAGA 956 |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| Sbjct 901 ATCTCTGGGAATGATGACTTCGGTGTTGGTTTGTCCAGATGGAAAGACCATTGAAGCAGA 960 Query 957 AGCAGCTCATGGCACAGTTACTCGCCACTACAGAGTTCACCAAAAAGGTGGTGAAACAAG 1016 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 961 AGCAGCTCATGGCACAGTTACACGCCACTACAGAGTTCACCAGAAAGGTGGTGAAACAAG 1020 Query 1017 CACCAACAGCATAGCCTCCATTTTTGCTTGGTCCAGAGGCCTTGCCCACAGGGCAAAGCT 1076 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 CACCAACAGCATAGCCTCTATTTTTGCTTGGTCCAGAGGCCTTGCCCACAGGGCAAAGCT 1080 Query 1077 GGACAGCAATGCCGCACTCTTGAGCTATACTGAGAAACTAGAAGCAGCTTGCATGGGGAC 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 GGACAGCAATGCCGCACTCTTGAGCTATACTGAGAAACTAGAAGCAGCTTGCATGGGGAC 1140 Query 1137 GGTGGAGTCTGGCAAAATGACCAAGGATCTAGCTCTCCTGATCCACGGACCCAAGGTTAG 1196 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1141 GGTGGAGTCTGGCAAAATGACCAAGGATCTAGCTCTTCTGATCCACGGAGCCAAGGTTAG 1200 Query 1197 GAGGGATCAGTATGTGAATACAGAAGAGTTCATTGATGCGGTGGCATGGGAGTTAAGAAG 1256 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1201 GAGGGATCAGTATGTGAATACGGAAGAGTTCATTGATGCGGTGGCATGGGAGTTAAAAAG 1260 Query 1257 AAGATTGTTAGGCAAC---TCCAGGTTGTGAGAAGAA-GAATGGAAATCTGAAAAGCAAA 1312 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct 1261 AAGATTGTTAGGCAACAACTCCAGGTTGTGAGAAGAAAGAATGGAAATCTGAAAAGCAAA 1320 Query 1313 GAGTCGCAGCAGCGCGATGT 1332 ||||| |||||||| ||||| Sbjct 1321 GAGTCTCAGCAGCGTGATGT 1340 Score = 122 bits (66), Expect = 7e-27 Identities = 120/143 (84%), Gaps = 16/143 (11%) Strand=Plus/Plus Query 1385 GGAACTCAGATTTCCCAAAGCCGAGACGACTCACTCCTCATTCAAACGTTCAAATTTGAA 1444 |||||||||||||||||||||| || ||||||||||||||| | |||| ||| ||||| Sbjct 1436 GGAACTCAGATTTCCCAAAGCC--GA-GACTCACTCCTCATTGATTCGTTAAAAATTGAA 1492 Query 1445 TC----T-----TTCTTTCTCTGTATAATCTCTGTTGTAAAAGCTACCAACCAATCAACA 1495 || | |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1493 TCTTTTTAGCCCTTCTTTCTCTGTATAATCTCTGTTGTAAAAGCTACCAA----TCAACA 1548 Query 1496 GAAATGGCTACGTTCACTTTGTC 1518 ||||||||||||||| | ||||| Sbjct 1549 GAAATGGCTACGTTCTCGTTGTC 1571 > AT1G65930.1 | Symbols: cICDH | cytosolic NADP+-dependent isocitrate dehydrogenase | chr1:24538886-24542129 FORWARD LENGTH=1703 Length=1703 Score = 699 bits (378), Expect = 0.0 Identities = 949/1219 (78%), Gaps = 61/1219 (5%) Strand=Plus/Plus Query 46 GAGAAGATCAAGGTGATC-AATCCCGTTGTTGAAATGGATGGAGACGAAATGACTC-GAG 103 ||||||||||||||| | |||||| | || || |||||||| || |||||||| | | | Sbjct 212 GAGAAGATCAAGGTG-GCAAATCCCATCGTCGAGATGGATGGTGATGAAATGAC-CAGGG 269 Query 104 TTATCTGGAAATTC-ATCAAAGACAAGCTTATTTTC-CCTTTCGTGGAGTTGGATATCAA 161 |||| ||| || || ||||| || ||||||| || | ||||| ||||||||||||||||| Sbjct 270 TTATTTGG-AAGTCTATCAAGGATAAGCTTA-TTACTCCTTTTGTGGAGTTGGATATCAA 327 Query 162 ATACTTTGATCTTGGACTGCCTAACCGCGATTTC-ACTGACGATAAGGTTACTATAGAGA 220 ||||| || ||||| || ||| |||| || | | || || || || |||||||| || | Sbjct 328 GTACTTCGACCTTGGTCTTCCTCACCGTGA-TGCTACGGATGACAAAGTTACTATTGAAA 386 Query 221 GTGCTGAAGCTACTTTA-AAGTATAATGTGGCTATTAAGTGTGCGACGATTACTCCGGAT 279 ||||||||||||| | | ||||| |||||||| || |||||||| || || ||||| ||| Sbjct 387 GTGCTGAAGCTAC-TAAGAAGTACAATGTGGCGATCAAGTGTGCCACCATCACTCCAGAT 445 Query 280 GAA-GCTCGTGTTAGGGAGTTCGGCTTAAAGAAAATGTGGAGGAGTCCTAACGGAACTAT 338 ||| || ||||| | ||| || ||||| ||| | |||||||| ||||| || || || || Sbjct 446 GAAGGC-CGTGTCACGGAATTTGGCTTGAAGCAGATGTGGAGAAGTCCAAATGGGACCAT 504 Query 339 AAGGAACATTTTAAACGGCACAGT-TTTCAGGGAGCCTATCATTTGCAGAAACATT-CCT 396 ||||| || | || || || || ||| || ||||| || || |||| ||| || || Sbjct 505 CAGGAATATCCTGAATGGAACTGTATTT-AGAGAGCCAATTATCTGCAAAAATGTTCCCA 563 Query 397 CGTATTGTTCCAGGATGGACGAAGCCAATCTGTATTGGAAGGCATGCTTTTGGTGATCAG 456 | |||| ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 564 AG-CTTGTCCCAGGCTGGACAAAGCCCATCTGCATTGGAAGGCATGCTTTTGGTGATCAG 622 Query 457 TATAGAGCCACTGATATCAT-TG-TCAATGAACCAGGAAAACTGAAACTA-GTT-TTTGA 512 || | ||||||||| | | | |||| | |||||||||||||| ||| | ||||| Sbjct 623 TACCGTGCCACTGATG-C-TGTAATCAAGGGACCAGGAAAACTGA--CTATGACCTTTGA 678 Query 513 GCCAAGTGGATCTTCTCAGAAAACAGAATTCGAAGTCTTCA-ATTTCACTGGTGGAGGTG 571 | || | || |||||| ||| ||||||||| | |||| ||||||| ||||| Sbjct 679 GGGAAAAG-ATGG-----GAAAACTGAAACCGAAGTCTTTACATTT-ACTGGTGAAGGTG 731 Query 572 -T-T-GCTTTAGCCATGTATAACACTGATGAGTCTATTCGTGCATTTGCTGAGTCC-TCG 627 | | ||| | || ||||| |||||||||||||| || ||||| |||||||| | | ||| Sbjct 732 GTGTTGCTATGGCAATGTACAACACTGATGAGTCCATCCGTGCTTTTGCTGA-TGCATCG 790 Query 628 ATGTACACAGCTTACCAGAAAAAGTGGCCACTTTACCTCTC-CACAAAAAACACCATCCT 686 ||| |||| ||||| |||||||||||||||||||||| | |||||| || ||||| || Sbjct 791 ATGAACACTGCTTATGAGAAAAAGTGGCCACTTTACCT-TAGCACAAAGAATACCATTCT 849 Query 687 CAA-AATATATGATGGAAGATTCAAGGATATATTCCAAGAAGTTTATGAAGCTAATTGGA 745 || || ||| ||||| |||||||| || || ||||||||||| |||||||| | |||| Sbjct 850 TAAGAA-ATACGATGGCAGATTCAAAGACATCTTCCAAGAAGTCTATGAAGCCAGCTGGA 908 Query 746 -GATCCAAGTATGAAGCTGCAGGGATATGGTATGAGCATCGTTTGATAGATGATATGGTT 804 | || |||||||| ||||| || || |||||||| || ||| | || ||||||||||| Sbjct 909 AG-TCGAAGTATGATGCTGCTGGAATCTGGTATGAACACCGTCTCATTGATGATATGGTG 967 Query 805 GCATATGC-CATGAAAAGTGAGGGGGGTTATGTCTGGGCATGCAAGAATTACGATGGAGA 863 || || || | | || |||||||| || ||||| ||||||||||| || || ||||| || Sbjct 968 GCCTACGCTCTT-AAGAGTGAGGGAGGCTATGTTTGGGCATGCAAAAACTATGATGGTGA 1026 Query 864 TGTACAGAGCGATTTCTTAGCCCAAGGATAT-GGATCTCTGGGAATGATGACGTCGGTGT 922 ||| || || |||||||| || ||||||| | || || || ||| ||||||| || || | Sbjct 1027 TGTCCAAAGTGATTTCTTGGCACAAGGAT-TCGGGTCACTTGGATTGATGACATCTGT-T 1084 Query 923 -TGGTTTGTCCTGATGGAAAAACCATTGAAGCAGAAGCAGCTCATGGCACAGTTACTCGC 981 |||| || || |||||||| || |||||||| ||||| || ||||| || || || || Sbjct 1085 CTGGTCTGCCCAGATGGAAAGACGATTGAAGCTGAAGCGGCCCATGGAACTGTCACCCGT 1144 Query 982 CACTACAGAGTTCACCAAAAAGGTGGTGAAACAAGCACCAACAGCATAGCCTCCATTTTT 1041 |||| ||| ||||| || ||||||||||| || ||||| |||||||||||||| |||||| Sbjct 1145 CACTTCAGGGTTCATCAGAAAGGTGGTGAGACCAGCACAAACAGCATAGCCTCTATTTTT 1204 Query 1042 GCTTGGTC-CAGAGGCCTTGCCCACAGGGCAAAGCTGGAC-AGCAATGCCGCACTCTTGA 1099 |||||| | | | || ||||| |||||||| ||| | || | ||| || ||||||| Sbjct 1205 GCTTGGACTC-GTGGACTTGCACACAGGGCTAAGTTAGATGA-CAACGCAAAACTCTTG- 1261 Query 1100 GCTAT-ACTGAGAAACTAGAAGCAGCTTGCATGGGGACGGTGGAGTCTGGCAAAATGACC 1158 | | | |||||||| || ||||| ||||| | ||||| |||||||| || ||||||||| Sbjct 1262 GATTTCACTGAGAAGCTGGAAGCCGCTTGTGTTGGGACAGTGGAGTCAGGGAAAATGACC 1321 Query 1159 AAGGATCTAGCTCTCCTGATCCACGGACCCAAGG-TTAGGAGGGATCA-GTATGTGAATA 1216 || ||||| || ||| | || ||||| | ||| | || |||||| || ||| |||| | Sbjct 1322 AAAGATCTTGCACTCATCATTCACGG-CTCAAAGCTTTCGAGGGA-CACGTACCTGAACA 1379 Query 1217 CAGAAGAGTTCATTGATGC 1235 |||| |||||||| ||||| Sbjct 1380 CAGAGGAGTTCATCGATGC 1398 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74899213140 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5