BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474712 Length=1042 Score E Sequences producing significant alignments: (Bits) Value AT2G23840.1 | Symbols: | HNH endonuclease | chr2:10153797-1015... 1397 0.0 > AT2G23840.1 | Symbols: | HNH endonuclease | chr2:10153797-10155647 REVERSE LENGTH=1087 Length=1087 Score = 1397 bits (756), Expect = 0.0 Identities = 949/1038 (91%), Gaps = 30/1038 (3%) Strand=Plus/Plus Query 1 TTGGATCACCCTAA---CTTC--TTC--TTCAATCAAATGGCACATTTCTCTTCGAGACT 53 |||||||||||||| |||| ||| |||||||||||||||||||||||| | ||||| Sbjct 11 TTGGATCACCCTAACTTCTTCGTTTCGTTTCAATCAAATGGCACATTTCTCTGCTAGACT 70 Query 54 TAAGCTTCTCTCAAGCAACGATGGATTGTCATTTGGTGTAGATTCCAGAGACCAATTGCG 113 ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct 71 TAAGCTTCTCTCAAGCAACGATGGATTATCTTTTGGTGTAGATTCGAGAGACCAATTTCG 130 Query 114 GCAAAGCCTTTACATGGCCGGTGGTGGAACTCCTTTGGTTCCAATACGCAGGAGCCGATT 173 ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | Sbjct 131 GCAGAGCCTTTACATGGCCGGTGGTGGATCTCCTTTGGTTCCAATACGCATGAGCCGACT 190 Query 174 AAAGTTTTGTGCAAGAATTTTCTCGTCTTACTCTTTTCCCTATAAGAGAAAGAAAATTAG 233 |||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 191 AAAGTTTTGTGCTAGAATCTTCTCATCTTACTCTTTTCCTTATAAGAGAAAGAAAATTAG 250 Query 234 GGATTTCGATAACACCGAGAAAAATCTTGGTATTGATGAAGACAACGATGAATGGGATTT 293 |||| |||||||||||||||||||||||| |||||| |||||||||||||| |||||||| Sbjct 251 GGATCTCGATAACACCGAGAAAAATCTTGATATTGACGAAGACAACGATGAGTGGGATTT 310 Query 294 TGATGGAGACGATGATGGTTTAGAGACTGATG---ATCTTTCTTGCTTCAGAGGCTTAGT 350 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 311 TGATGGAGACGATGATGGTTTAGAGACTGATGATCATCTTTCTTGCTTCAGAGGCTTGGT 370 Query 351 TCTTGATATTTCATACAGGCCGGTCAATGTGGTTTGCTGGAAGCGCGCAATCTGTCTCGA 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 371 TCTTGATATTTCATACAGGCCGGTCAATGTGGTTTGCTGGAAGCGCGCAATCTGCCTCGA 430 Query 411 GTACATGGATAAGGCCGACGTTTTGGAGTATTATGATCAGACTGTTAGTTCTCCTACTGG 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 431 GTACATGGATAAGGCCGACGTTTTGGAGTATTATGATCAGACTGTTAGTTCTCCTACGGG 490 Query 471 TTCATTCTATATACCAGCTGTATTAAGGGTTCCACATTTGCTTCAGGTTGTTAAAAGAAG 530 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 491 TTCGTTCTACATACCAGCTGTATTAAGGGTTCCACATTTGCTTCAGGTTGTTAAAAGAAG 550 Query 531 AAGAGTGAAAAACTCACTAAGTCGTAAAAATATATTACTGCGAGACGGTTATACTTGTCA 590 |||||||||||||||||| || ||||||||||| ||||| ||||||| |||||||||||| Sbjct 551 AAGAGTGAAAAACTCACTTAGCCGTAAAAATATTTTACTACGAGACGATTATACTTGTCA 610 Query 591 ATATTGTTCTTCCCGTGAAAACTTGACCATTGATCATGTTATGCCAGTTTCTCGAGGTGG 650 |||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 611 ATATTGTTCTTCGCGAGAAAATTTGACCATTGATCATGTTATGCCGGTTTCTCGAGGTGG 670 Query 651 AGAATGGAGCT-GGCAAAACCTAGTAGCTGCATGTTCAAGATGTAACTCAAAGAAAGGTC 709 |||||||| || ||||||||||||||||||||||||||||||| ||||||| |||||| | Sbjct 671 AGAATGGA-CTTGGCAAAACCTAGTAGCTGCATGTTCAAGATGCAACTCAAGGAAAGGAC 729 Query 710 AGAAGACAGCAGAAGAAGCACACATGAAGTTACTCAAGGTCCCGAAGGAACCAAAAGACT 769 ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 730 AGAAGACAGCAGACGAAGCACACATGAAGTTACTTAAGGTCCCAAAGGAACCAAAAGACT 789 Query 770 ATGACATTGTTGCAATACCATTAACAAATGCAGCTATAAGGATGCTGAGATCAAATAAGG 829 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 790 ATGACATTGTTGCAATACCATTAACAAATGCAGCTATAAGGATGCTGAGATCGAATAAGG 849 Query 830 GAATGCCAGAAGAATGGCGTCAGTATCTGGCGAAACCTTTAACCGAGCCATAGCAGTTTA 889 | ||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||||| Sbjct 850 GCATGCCAGAAGAATGGCGTCAGTATCTGGCAAAACCTTTATCCGAGACATAGTAGTTTC 909 Query 890 TCTCAGGAATCAAGGAGCAAAAGTGG-TCCGTCCAGGCCATC-TCGTAAATATAGAA-CG 946 ||||||||||||||||||||||| || | ||| |||| || | ||||| | | || || Sbjct 910 TCTCAGGAATCAAGGAGCAAAAG-GGATAGGTCT-GGCCTTCCTTGTAAACACAAAATCG 967 Query 947 GTGGC-TCGATTGCATATGTTTGTC--A-T-G-GACTTGATTAGAGTACGCACTCAAATG 1000 |||| ||| | || | ||| || | | | |||||| || |||| | ||||||||| Sbjct 968 -TGGCCTCG-T---ATCT-TTTCTCCCAATCGTGACTTGTTTTGAGTTGG-ACTCAAATG 1020 Query 1001 TATATAATACGTAAATAT 1018 |||||||||||||||||| Sbjct 1021 TATATAATACGTAAATAT 1038 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51088127499 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5