BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474726 Length=2163 Score E Sequences producing significant alignments: (Bits) Value AT1G54510.1 | Symbols: ATNEK1, NEK1 | NIMA-related serine/threo... 3094 0.0 AT3G63280.1 | Symbols: ATNEK4, NEK4 | NIMA-related kinase 4 | c... 425 7e-118 > AT1G54510.1 | Symbols: ATNEK1, NEK1 | NIMA-related serine/threonine kinase 1 | chr1:20358319-20362545 REVERSE LENGTH=2254 Length=2254 Score = 3094 bits (1675), Expect = 0.0 Identities = 1908/2020 (94%), Gaps = 17/2020 (1%) Strand=Plus/Plus Query 1 CAAATTTGTCATCTTCGTCCCCACAAATCACTCTCCCAAATAGCTTTCTTCTCTTACCAT 60 |||||||||||||||||||||||| |||||||||| ||| || ||||||||| || || | Sbjct 1 CAAATTTGTCATCTTCGTCCCCACTAATCACTCTCGCAAGTATCTTTCTTCT-TT-CC-T 57 Query 61 T-AACTCTTAAACTCTCGCCATCAGATC--TTTCTCTGATTTCTTGGGTGAGAAAAT-A- 115 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 58 TAAACTCTTAAACTCTCGCCATCAGATCTTTTTCTCTGATTTCTTGGGTGAGAAAATAAC 117 Query 116 AAA---AGCTAGAAATGGAACAGTATGAGATTCTTGAGCAAATTGGAAAAGGATCTTTTG 172 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 118 AAAGCTAGCTAGAAATGGAACAGTATGAGTTTCTTGAGCAAATTGGAAAAGGATCTTTTG 177 Query 173 GGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAAATATGTATTGAAAAAGATCC 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 GGTCAGCTCTTTTAGTGAGACATAAGCATGAGAAGAAAAAATATGTATTGAAAAAGATCC 237 Query 233 GTCTTGCCCGGCAAACTCAGAGGACCAGACGGTCTGCACATCAAGAGATGGAGCTTATCT 292 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 238 GTCTTGCCCGGCAAACTCAAAGGACCAGACGATCTGCACATCAAGAGATGGAGCTTATCT 297 Query 293 CGAAAATGCGTCATCCATTTATTGTGGAATACAAAGATTCTTGGGTGGAAAAGGCTTGCT 352 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 298 CGAAAATGCGTCATCCATTTATCGTGGAATACAAAGACTCTTGGGTGGAAAAGGCTTGCT 357 Query 353 ATGTGTGCATCGTCATAGGTTATTGTGAAGGAGGGGACATGGCACAAGCTATCAAGAAAT 412 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 358 ATGTGTGCATTGTCATAGGTTATTGTGAAGGAGGAGACATGGCACAAGCTATCAAGAAAT 417 Query 413 CCAATGGCATGTATTTTTC-GGAAGAGAAACTGTGCAAGTGGCTTGTTCAGCTTCTGATG 471 ||||||| || ||||| | ||||||||||||||||||||||||||||||||| |||||| Sbjct 418 CCAATGGTGTGCATTTT-CAGGAAGAGAAACTGTGCAAGTGGCTTGTTCAGCTCCTGATG 476 Query 472 GGCCTTGAGTACTTACACTCTAACCATATTCTTCATCGTGATGTCAAGTGTTCTAACATA 531 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GGCCTTGAGTACTTACATTCTAACCATATTCTTCATCGTGATGTCAAGTGTTCTAACATA 536 Query 532 TTCTTGACCAAAGAGCAAGATATACGCCTTGGTGATTTTGGTTTAGCCAAGATTCTAACA 591 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 537 TTCTTGACCAAAGAGCAAGATATACGCCTTGGTGATTTTGGGTTAGCCAAGATTCTAACA 596 Query 592 TCCGACAATCTCACTTCCTCCGTTGTCGGGACTCCCAGCTATATGTGCCCTGAGCTTCTA 651 |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || Sbjct 597 TCCGACGATCTCACATCCTCTGTTGTCGGGACTCCCAGCTATATGTGCCCTGAGCTTTTA 656 Query 652 GCTGATATACCTTATGGTTCTAAATCTGACATTTGGTCTTTAGGATGCTGTATATATGAA 711 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 657 GCTGATATACCTTATGGTTCCAAATCTGACATTTGGTCTTTAGGGTGCTGTATATATGAA 716 Query 712 ATGGCTTATCTTAAGCCGGCATTTAAAGCATTTGATATGCAAGCACTGATTAATAAGATA 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 ATGGCTTATCTTAAGCCGGCATTTAAAGCATTTGATATGCAAGCACTGATTAATAAGATA 776 Query 772 AACAAGACGATTGTGGCTCCGCTCCCTGCAAAATATTCTGGTTCATTCCGAAGTCTTGTC 831 ||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||| ||| Sbjct 777 AACAAGACGATTGTGTCTCCGCTCCCTGCCAAATATTCTGGTCCATTCCGAGGTCTCGTC 836 Query 832 AAAAGCATGCTGCGAAAAAACCCAGAAGTTCGGCCATCTGCCTCAGATTTACTTAGACAT 891 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 AAAAGCATGCTGCGGAAAAACCCAGAAGTTCGGCCATCTGCCTCAGATTTACTTAGACAT 896 Query 892 CCACATCTTCAGCCTTATGTTCTGGATGTCAAACTCAGGCTCAATAACCTGAGGCGCAAA 951 |||||||||||||||||||||||||||||||| || ||||||||||| || || |||||| Sbjct 897 CCACATCTTCAGCCTTATGTTCTGGATGTCAAGCTTAGGCTCAATAATCTTAGACGCAAA 956 Query 952 ACATTACCGCCTCAATGGCC-AGATTCTAAGAGGATTATGAAGAGAGCTCATTTTTCTGA 1010 |||||||||||| | | ||| || ||| |||||||||||||||| ||||||||||||||| Sbjct 957 ACATTACCGCCTGAGTTGCCGAG-TTCCAAGAGGATTATGAAGAAAGCTCATTTTTCTGA 1015 Query 1011 ACCCGCTGTCACTTGTCCAGCCTTTGGAGAACGACAACATAGTTCTCTATGGAATGACAG 1070 ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1016 ACCAGCTGTCACTTGTCCAGCCTTTGGAGAACGACAACATAGGTCTCTCTGGAATGACAG 1075 Query 1071 AGCTTTGAATCCCGAAGCTGAAGAAGACACTGCATCTTCTATCAAATGTATAAGTCGCAG 1130 |||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 1076 AGCTCTGAATCCAGAAGCTGAAGAAGACACTGCATCTTCTATTAAATGTATTAGTCGCAG 1135 Query 1131 AATTACAGATTTATCAATTGAGAGCAGCAGTAAAAGAACAGTGATATGTAAGCAAGTTGC 1190 |||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||| | Sbjct 1136 AATTTCAGATTTATCGATTGAGAGCAGCAGTAAAGGAACATTGATATGTAAGCAAGTTTC 1195 Query 1191 TTCAAGTGCTTCTAAGGTCTCAAAGTATCCTCTTGCAAAATCTTCAGTGACATCCAGAAG 1250 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 TTCAAGTGCATGTAAGGTCTCAAAGTATCCTCTTGCAAAATCTTCAGTGACATCCAGAAG 1255 Query 1251 AATCATGGAAACTGGAAGGATATTCGCAC-ACTTGCATCCGGTTTCAGGTGGTGGTACTA 1309 |||||||||||||||| ||| || || || |||||||||||||||||||||||||||| | Sbjct 1256 AATCATGGAAACTGGACGGAGATCCG-ACCACTTGCATCCGGTTTCAGGTGGTGGTACCA 1314 Query 1310 CCAGCAAGATAATTCCATCAGCTCGCCGGACTTCTCTACCACTGACGAAAAGGGCTACAA 1369 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1315 CCAGCAAGATAATTCCATCAGCTCGCCGGACTTCTCTACCACTCACGAAAAGAGCTACAA 1374 Query 1370 ACCAAGAAGCTGCAGCTTACAACCGAACAGTTGGAATCTTGCAGAATGTGAAGTCTCCAG 1429 ||||||||| |||||||||||||| || |||||| |||||||||||||| |||||||||| Sbjct 1375 ACCAAGAAGTTGCAGCTTACAACCCAATAGTTGGGATCTTGCAGAATGTCAAGTCTCCAG 1434 Query 1430 AATATTCCATTAATGAGCCACAAGTTGATAAGATTGCCATTTTCCCATTAGCTCCATATG 1489 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1435 AATATTCCATTAATGAGCCACAAGTTGATAAGATTGCCATTTTTCCATTAGCTCCATATG 1494 Query 1490 AACAAGACATCTTCTTTACTCCCATGCAAAGGAGAACATCTTCCAAAAGCTCCTCTGTCT 1549 ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| Sbjct 1495 AACAAGACATCTTCTTTACTCCCATGCAAAGGAAAACATCGTCTAAAAGCTCCTCTGTCT 1554 Query 1550 CAGACCGCTCTATAACAAAAGACAAATGCACAGTTCAAACTCATACGACGTGGCAGGGAA 1609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1555 CAGACCGCTCTATAACAAAAGACAAATGCACAGTTCAAACTCATACGACGTGGCAGGGAA 1614 Query 1610 TCCAACTCAACATGGTAGACAACATAAGCGAAGGGTCATCATCATCTGATCAGAATGCAA 1669 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 1615 TCCAACTCAACATGGTAGATAACATAAGCGACGGGTCATCATCATCTGATCAGAATGCAA 1674 Query 1670 CTGCTGGTGTATCAAGCCAGACCACATCCTCTACTACAAGAAGATGTCGGTTTGACCCAT 1729 | ||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||| Sbjct 1675 CAGCTGGTGCATCAAGCCACACCACATCCTCTAGTTCAAGAAGATGTCGGTTTGACCCAT 1734 Query 1730 CATCGTATCGTCAACGGGCTGATGCTTTGGAGGGGTTACTTGAGTTTAGTGCCAGATTAT 1789 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1735 CATCGTATCGTCAACGGGCTGATGCTTTGGAGGGGTTGCTTGAGTTTAGTGCCAGATTGT 1794 Query 1790 TACAAGAAGGGAGATATGATGAACTCAACGTGTTGCTTAAGCCTTTTGGCCCAGGTAAGG 1849 |||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||| Sbjct 1795 TACAAGAAGGGAGATATGATGAACTCAATGTATTGCTTAAGCCTTTTGGTCCAGGAAAGG 1854 Query 1850 TGTCTCCCAGAGAAACCGCTATATGGATCGCAAAGAGCTTGAAGGAGAATCGTGAGAAGT 1909 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 1855 TGTCTCCCAGAGAAACCGCGATATGGATCGCAAAGAGCTTGAAGGAGAATCGAGACAAGA 1914 Query 1910 CAAAAACGGTAAATCTAAATGTTTCTAGAGAGATACCACCTGTGGGTCTCCTCTGACAGG 1969 | |||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1915 CCAAAATGGTAGATCTAAATGTTTCTAGAGAGATACCACATGTGGGTCTCCTCTGACAGG 1974 Query 1970 CTTCACTTTGTCGTAACGTCCAGTTTAGTACGGTTTTAGC 2009 || ||| ||||| |||||| | ||||||| |||||||||| Sbjct 1975 CTCCACATTGTCATAACGTTCGGTTTAGTTCGGTTTTAGC 2014 Score = 167 bits (90), Expect = 5e-40 Identities = 149/174 (86%), Gaps = 17/174 (10%) Strand=Plus/Plus Query 2007 AGCTAGAGTTGGTTTA-G----GTTTGATGGCTGACACTTTTAAAAGATGAGTAACAGTA 2061 |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 2063 AGCTAGAGTTGGTTTAGGTTTAGTTTGATGGCTGACACTTTTAAAAGATGAGTAACAGTA 2122 Query 2062 TTAGTAGG---------ATGGTCTTTGCTTGAGCCGAACCAGTAGCTTTGCATATGTAAT 2112 |||||||| ||||||||||||| || |||||| |||||||||||| |||||| Sbjct 2123 TTAGTAGGTTGCGTTGGATGGTCTTTGCTTTAGTCGAACCGGTAGCTTTGCATTTGTAAT 2182 Query 2113 TTGTACACTT-A--GTGTTGACACGTTTTATAACTTGTATTAATATAGACTTCA 2163 ||||||||| | ||||| |||| ||||||||||||||||| ||||||||||| Sbjct 2183 CTGTACACTTGATAGTGTTAACACCTTTTATAACTTGTATTACTATAGACTTCA 2236 > AT3G63280.1 | Symbols: ATNEK4, NEK4 | NIMA-related kinase 4 | chr3:23377979-23381546 FORWARD LENGTH=2066 Length=2066 Score = 425 bits (230), Expect = 7e-118 Identities = 621/805 (77%), Gaps = 46/805 (6%) Strand=Plus/Plus Query 127 ATGGAACAGTATGAGATTCTT-GAGCAAATTGGAAAAGGATCTTTTGGGTCAGCTCTT-T 184 ||||| | |||||| | |||| ||||| || || ||||| || ||||| || |||||| | Sbjct 215 ATGGAGCGGTATGA-AGTCTTGGAGCAGATCGGGAAAGGGTCCTTTGGCTCTGCTCTTCT 273 Query 185 TAGTGAGACATAAGCATGAGAA-G-AAAAAATATGTATTGAAAAAGATCCGTCTTGCCCG 242 | || ||||| || || |||| | || ||||| || ||||||||||| ||||| ||||| Sbjct 274 T-GTTAGACACAAACA--AGAACGCAAGAAATACGTTTTGAAAAAGATTCGTCTCGCCCG 330 Query 243 GCAAACTCAGAGGAC-CAGACGGTCTGCACATCAAGAGATGGAGCTTATCTCGAAAATGC 301 || || | ||| | | |||| || || ||||| ||||||||||| || || | | | Sbjct 331 CCAGTCTGATAGGGCTC-GACGATCAGCTCATCAGGAGATGGAGCTCATTTCTACTGTCC 389 Query 302 GTC-ATCCATTTATTGTGGAATACAAAGATTCTTGGGTGGAAAAGGCTTGCTATGTGTGC 360 | | |||||||| |||| || ||||||||||| ||||| ||||||| ||||||||||||| Sbjct 390 G-CAATCCATTTGTTGTCGAGTACAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTGC 448 Query 361 ATCGTCATAGGTTATTGTGAAGGAGGGGACATGGCACA-AGCTATCAAGAA-ATCCAATG 418 || || || || ||||| |||| ||||||||| || | | | ||||| || | | ||| Sbjct 449 ATTGTTATTGGATATTGCCAAGGCGGGGACATGACAGATA-CCATCAA-AAGA-GC-ATG 504 Query 419 -GCATG-T-ATTTTTCGGAAGAGAAACTGTG-CAAGTGGCTTGTTCAGCT-TCTGATGGG 473 | || | ||||| | || |||||| | || ||| |||||||| || || | | |||| Sbjct 505 TG-GTGTTCATTTTCCTGAGGAGAAATTATGCCAA-TGGCTTGTCCAACTAT-TAATGGC 561 Query 474 CCTTGAGTA-CTTACACTCTAACCATATTCTTCATCGTGATGTCAAGTGTTCTAACATAT 532 ||| || || ||| ||||| |||||||||||||| || |||||||||||||||||||||| Sbjct 562 CCTCGATTATCTT-CACTCCAACCATATTCTTCACCGCGATGTCAAGTGTTCTAACATAT 620 Query 533 TCTTGACCAAAGAGCAAGATATACGCCTTGGTGATTTTGGTTTAGCCAAGATTCTAACAT 592 ||||||| ||||||||||| ||||| |||||||| ||||| | || ||||||||||| | Sbjct 621 TCTTGACAAAAGAGCAAGACATACGGCTTGGTGACTTTGGACTCGCTAAGATTCTAACTT 680 Query 593 CCGACAATCTCACTTCCTCCGTTGTCGGGACTCCCAGCTATATGTGCCCTGAGCTTCTAG 652 | || | || || ||||| ||||| || ||||| ||||| ||||| ||||||||||| | Sbjct 681 CTGATGACCTTACATCCTCTGTTGTTGGAACTCCAAGCTACATGTGTCCTGAGCTTCTTG 740 Query 653 CTGATATACCTTATGGTTCTAAA-TCTGACATTTGGTCTTTAGGATGCTGTATATATGAA 711 |||| |||||||| || || ||| || ||||||||||| || |||||||| || |||||| Sbjct 741 CTGACATACCTTACGGATC-AAAGTCAGACATTTGGTCGTTGGGATGCTGCATGTATGAA 799 Query 712 ATGGCTTATCTTAAGCCGGCATTT-AAAGCATTT-GATATGCA-AGCACTGATTAATAAG 768 |||||| || ||| || | ||| ||||| || ||| |||| | ||||||| | || Sbjct 800 ATGGCTGCTCATAAACCTCC-TTTCAAAGC-TTCCGATGTGCAGA-CACTGATCACCAAA 856 Query 769 ATAAACAAGACGATTGTGGCTCCGCT-CCCTGCAAAATATTCTGGTTCATTCCGAAGTCT 827 ||| ||||| ||| ||| ||| | ||| || | ||||| || ||||||||| | || Sbjct 857 ATACACAAGTTGATAATGGATCCTATTCCC-GCCATGTATTCCGGCTCATTCCGAGGCCT 915 Query 828 TGTCAAAAGCATGCTGCGAAAAAACCCAGAAGTTC-GGCCAT-CTGCCTCA-GATTTACT 884 | | ||||||||| || | ||||| || ||| | | ||||| | || | | || | || Sbjct 916 TATTAAAAGCATGTTGAGGAAAAATCCTGAACT-CAGGCCAAGC-GC-TAACGAGCTGCT 972 Query 885 TAGAC-ATCCACATCTTCAGCCTTA 908 || || |||| |||||||||||||| Sbjct 973 TA-ACCATCCTCATCTTCAGCCTTA 996 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107278564665 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5