BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474748
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54730.2 | Symbols: | Major facilitator superfamily protein... 2318 0.0
> AT1G54730.2 | Symbols: | Major facilitator superfamily protein
| chr1:20424471-20430051 FORWARD LENGTH=1486
Length=1486
Score = 2318 bits (1255), Expect = 0.0
Identities = 1402/1475 (95%), Gaps = 2/1475 (0%)
Strand=Plus/Plus
Query 1 ATGAAAGGAGAAATCGATGAAGCTAATCTTGCTCCTGAAACTTCACTTATTGAGAAAGAA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATGAGAGGAGAAATCGATGAAGCTAATCTTGCTCCTGAAACTTCACTTATTAACAAAGAG 60
Query 61 AATCAAGATTCATCGGCGACAACAACAACTACTCTCTTGCTCACCACTTTTGTAGCTGTG 120
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 61 AATCAAGACTCATCGGCGACAATAACAACTACTCTCTTGCTCACCACTTTTGTAGCCGTG 120
Query 121 TCTGGTTCCTTTGTCTTTGGCTCAGCTATAGGATACTCATCACCTGTTCAGTCCGATTTA 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 TCTGGTTCCTTTGTCTTTGGCTCAGCTATAGGATATTCATCACCTGTTCAGTCGGATTTA 180
Query 181 ACCAAGGACTTGAATCTCTCTGTGGCAGAGTATTCGCTTTTCGGTTCGATTCTGACAATT 240
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 181 ACCAAGGAGTTGAATCTCTCTGTGGCAGAGTACTCGCTCTTCGGTTCGATTCTGACAATT 240
Query 241 GGAGCAATGATCGGCGCAGCTATGAGTGGACGAATCGCTGATTTGATAGGCAGACGAGCT 300
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 241 GGAGCAATGATCGGCGCAGCTATGAGTGGACGAATCGCCGATATGATAGGCAGACGAGCT 300
Query 301 ACTATGGGTTTCTCGGAGATGTTTTGCATTCTCGGCTGGTTAGCAATCTACCTTTCTAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTATGGGTTTCTCGGAGATGTTTTGCATTCTCGGCTGGTTAGCAATCTACCTTTCTAAG 360
Query 361 GTTGCAGTTTGGCTTGACGTTGGGAGATTCCTGGTTGGTTATGGAATGGGCGTCCTTTCG 420
|||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 361 GTTGCAATTTGGCTTGACGTTGGGAGATTCTTGGTTGGTTATGGAATGGGCGTTTTTTCG 420
Query 421 TTTGTGGTTCCTGTATACATAGCTGAAATCACTCCTAAGGATCTTCGTGGTGGGTTTACA 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 TTTGTGGTTCCTGTATACATAGCTGAAATCACTCCTAAGGGTCTTCGTGGTGGGTTTACA 480
Query 481 ACTGTTCATCAGTTAATGATATGTTTGGGTGTCTCAGTCGCATATCTCTTGGGCTCTTTT 540
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 ACTGTTCATCAGTTACTGATATGTTTGGGTGTCTCAGTCACATATCTCTTGGGCTCTTTT 540
Query 541 ATAGGCTGGCGAATTTTAGCTTTGATCGGAATGGTACCATGTGTTATACAAATGATGGGA 600
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 541 ATAGGCTGGCGAATTTTAGCTTTGATCGGAATGATACCATGTGTTGTACAAATGATGGGA 600
Query 601 TTATTTATCATCCCAGAGTCTCCTAGATGGTTGGCAAAAGTTGGCAGATGGGAAGAATTT 660
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 TTATTTGTCATCCCAGAGTCTCCTAGATGGTTGGCAAAAGTTGGCAAATGGGAAGAATTT 660
Query 661 GAGATTGCATTGCAACGATTACGGGGTGAATCTGCAGATATTTCATATGAGTCTACTGAA 720
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 661 GAGATTGCATTGCAACGATTACGTGGTGAATCCGCAGATATTTCATATGAGTCTAATGAG 720
Query 721 ATCAAAGATTATACGCAAAAACTTACAAATTTATCGGAAGGTAGTATACTAGACCTGTTC 780
|||||||||||||||| || ||||||| ||||||| |||||||||||| |||| ||||||
Sbjct 721 ATCAAAGATTATACGCGAAGACTTACAGATTTATCAGAAGGTAGTATAGTAGATCTGTTC 780
Query 781 CAGCCAAAGTATGCCAAATCTCTATTTGTGGGAGTAGGTCTGATGGTCTTGCAACAATTT 840
|||||| ||||||| ||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 781 CAGCCACAGTATGCTAAATCTCTAGTTGTGGGAGTTGGTCTGATGGTTTTGCAACAATTT 840
Query 841 GGAGGGGTTAATGGAATTGCGTTTTACTCTAGCTCTATTTTCGAATCTGCTGGTTTTTCT 900
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 841 GGAGGGGTTAATGGAATTGCTTTTTACGCTAGCTCTATTTTCGAATCTGCTGGGGTTTCT 900
Query 901 TCCAAAATTGGAATGATTGCGATGGTGGTCGTACAAATCCCTATGACAACTTTAGGTGTA 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 TCCAAAATTGGAATGATTGCGATGGTGGTCGTACAGATCCCTATGACAACTTTAGGTGTA 960
Query 961 GTGTTGATGGATAAATCGGGAAGAAGACCGTTACTTCTAATTTCTGCTACTGGAACATGC 1020
|||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 961 CTGTTGATGGATAAATCAGGAAGACGACCATTACTTCTAATTTCTGCTACTGGAACATGT 1020
Query 1021 ATCGGGTGTTTCCTCGTCGGCTTATCATTTTCATTACAGTTTGTAAAGCTATTGAGTGGA 1080
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 ATCGGGTGTTTCCTCGTCGGTTTATCATTTTCATTACAGTTTGTAAAGCAATTGAGTGGA 1080
Query 1081 GATGCTTCATTTCTAGCACTTGCAGGCGTTTTGGTGTACACCGGATCGTTTTCGTTAGGG 1140
|||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1081 GATGCTTCATATCTAGCACTTACAGGCGTTTTGGTGTACACCGGATCATTTTCATTAGGG 1140
Query 1141 ATGGGTGGGATTCCTTGGGTCATTATGTCAGAGATATTTCCAATAGATATAAAAGGACCA 1200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1141 ATGGGTGGGATTCCTTGGGTCATTATGTCAGAGATATTTCCAATAGACATAAAAGGATCA 1200
Query 1201 GCCGGAAGCCTCGTGACTGTTGTTAGCTGGGTTGGATCATGGATCATATCTTTTACATTT 1260
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1201 GCCGGAAGCCTCGTGACTGTTGTTAGCTGGGTCGGATCATGGATTATATCTTTTACATTT 1260
Query 1261 AACTTTCTAATGAATTGGAATCCGGCAGGAACGTTTTATGTTTTCGCTACTGTTTGTGGG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AACTTTCTAATGAATTGGAATCCGGCAGGAACGTTTTATGTTTTCGCTACTGTTTGTGGG 1320
Query 1321 GCTACTGTTATTTTTGTAGCAAAACTCGTACCAGAAACCATAGGTCGCACACTTGAGGAA 1380
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1321 GCTACTGTTATTTTTGTAGCAAAACTCGTACCAGAAACCAAAGGTCGCACACTTGAGGAA 1380
Query 1381 ATCCAATACTCGATTGGTTATGTGGAATTGTAATGTATAGTATTTGATTACAAGAA-ACT 1439
|||||||| |||||||||||||| |||||||||||||||||| |||||||| |||| | |
Sbjct 1381 ATCCAATATTCGATTGGTTATGTAGAATTGTAATGTATAGTAGTTGATTACGAGAATA-T 1439
Query 1440 TAATCATTTATTATAACGACTAAAAGTAAGATTTT 1474
| || | |||||||||| |||||||||||||||
Sbjct 1440 CAGTCCCTAATTATAACGATTAAAAGTAAGATTTT 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5