BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474768
Length=3102
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54920.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2846 0.0
> AT1G54920.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages. | chr1:20470678-20475180 FORWARD LENGTH=3226
Length=3226
Score = 2846 bits (1541), Expect = 0.0
Identities = 1995/2205 (90%), Gaps = 67/2205 (3%)
Strand=Plus/Plus
Query 1 AAACAATGCAATCATTGAGAAATCGTACAAGATTCAAGTGCGC-GGGATAAGCTATCCTG 59
||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 88 AAACAATGCAATCATTGAGAAATCGCACAAGATTCAAGTGCGCAGGG-TAAGCTATCCTG 146
Query 60 CGCACCCACCCAGCAACTAGGCGGAGCTTTAAAC-AGCCGACTAAAACCGAAGCTTTC-A 117
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |
Sbjct 147 CGCACCCACCCAGCAACTAGGCGGAGCTTAAAACTA-CCGACTAAAACCGAAGCTTTCAA 205
Query 118 AATCCATCCGTT-AAAACTGGTTTCCCGATCAAATGAACGGCCTCGATTTCTTCTTCTCC 176
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 AATCCATCCGTTAAAAACTGGTTTCCCGATCAAATGAACGGCCTCGATTTCTTCTTCTCC 265
Query 177 CCTTCGCCAACCGTCGATACATCCACCGGAAACAACGGCGAGGG-TGATGATTGGGGAGA 235
|| ||||||| |||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct 266 CCCTCGCCAATTGTCGATACATCCACAGGAAACAACGGCG-GGGATGATGATTGGGGAGA 324
Query 236 GTTCGTCGTCTCTTCCGA-----T-G---CAGATCGAAACGGTGCCGATCCGTTGCCTAA 286
||||||| ||||||||| | | ||||||| |||||||| ||| | | | |||
Sbjct 325 TTTCGTCGACTCTTCCGATGCTTTCGATTCAGATCGCAACGGTGCTGATTCATCACATAA 384
Query 287 TCGGATCGAGTCGGAGAAGAAGAGTCAGGCGAATTATGTTACTTCTCGTGGTCCGGTGCC 346
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 385 TCGGATCGAGTCGGAGAAGAAGAGTCAGGCGAATTGGGTTACTTCTCGTGGTCCAGTGCC 444
Query 347 ACTCTCTGTATTCGGAGAAGAAGAAGAAGACGATGCAGAATCAGGTGCGCCAGTTTCATC 406
||||||||| |||||||||||||||||||||||| |||||||| ||||| | ||| ||||
Sbjct 445 ACTCTCTGTGTTCGGAGAAGAAGAAGAAGACGATACAGAATCAAGTGCGTCGGTTCCATC 504
Query 407 GTTTGGATTCTCATTTGATTCGTTTTCCAGTAAACACAATGATGGCAACGGATCTGTGAA 466
||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 505 GTTTGGATTCTCATTCGATTCGTTTTCCAGTAAACGCAATGATAGCAACGGATCTGTGAA 564
Query 467 TAGAGTAGTGAATTCGAATACGAAGCATACTGTTGAAATTAGTGGTTTGATCGCAAATCT 526
|||||||||| |||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 565 TAGAGTAGTGGATTCGAATACAAATCATACTGTTGAAATTAGTGGTTTGATCCCAAATCT 624
Query 527 GTATAGAGAGAACGGACATAGTGATCTAAATAATCCTGGGAATTCAAATGGATTCAATGT 586
||||||| |||||||||||||||| | || |||| |||||||||| ||||||||||||
Sbjct 625 GTATAGAAAGAACGGACATAGTGA--T-AACAATCATGGGAATTCAGGTGGATTCAATGT 681
Query 587 AGATCTCTCAAGTTCGAATCGTAAAATTGAGAATTCAGCTGTTAGTTTGGAGACTATGAG 646
||||||||||||||||||||||||||| ||||||||||||||||| || | | | ||
Sbjct 682 AGATCTCTCAAGTTCGAATCGTAAAATCGAGAATTCAGCTGTTAGCTT-G-G---A-GA- 734
Query 647 CTGGAATCCATTGAATTTGGGTACAGAGAGGTCTGAT-AAGGCGAGCAATGTGGC-GAAT 704
| |||||| ||||||||||||||||| ||||||| | |||||||||||||| || ||||
Sbjct 735 C--GAATCCTTTGAATTTGGGTACAGAAAGGTCTG-TCAAGGCGAGCAATGT-GCTGAAT 790
Query 705 TCAAGTGCTCTTGGGGTCACATTGGATCCAGATTATTCAGATATGGGCTTTGCCGAGAAA 764
|||||| || ||| |||||||||||||||| ||||||||||| |||| |||||||| |||
Sbjct 791 TCAAGTACTATTGAGGTCACATTGGATCCAAATTATTCAGATTTGGGATTTGCCGATAAA 850
Query 765 AATGACGATGATCTTGATGGTTGGGAGTTTAAGACTGCCGAGTCTATGTTTGGAACTCCA 824
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 851 AGTGACGATGATCTTGATGGTTGGGAGTTTAAGACTGCTGAGTCTATGTTTGGAACTCTT 910
Query 825 GGTGGAAGCTAT-A--AGGAGGAACGAGAGAATGCTAAAAGTGAAT-CTGTTGTGGT-TC 879
|||||||| ||| | |||||||||||||||| || |||| | | | | | |
Sbjct 911 GGTGGAAGTTATAAGCAGGAGGAACGAGAGAAAGC-GGTCCAGAATACAG-CG-GATGT- 966
Query 880 AGAATTCAAGCATCTGGAGTTCA--T-ATACCAATGGAACAGGTCCAAATTTTGAAACTG 936
| | |||| | | ||||||||| | || ||||||||||||||||||||||| ||||
Sbjct 967 A-AGTTCAGGTGTTTGGAGTTCACCTGCTATAAATGGAACAGGTCCAAATTTTGATACTG 1025
Query 937 ATAAAGTAGATGCAGTTAAGTTAGTTTCTGAACAGGAAAACGGAGATGATGACCCTTGGG 996
|||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||
Sbjct 1026 CTAAAGTAGATGCAGTTAAGTTAGTGGCTGAACGGGAAAATGGAGATGATGACCCTTGGG 1085
Query 997 ACAATGGCGGATGGGAGTTTAAGGCTGCTGAAGCAG-GAGAGCCAAAGCACGATTTAACA 1055
|||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||
Sbjct 1086 ACAATGGCGGATGGGAGTTTAAGGTTGCTGAAGC-GAAAGAGCCAAAGCGCGATTTAACT 1144
Query 1056 AACAAGGAATCTAACGGCTGGGAGTTCGGATTTGGTTTTGAACCCGTTTCTAAAATCGAA 1115
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct 1145 AACAAGGAATCTAACGGCTGGGGGTTCGGATTTGGTTTTGAACCCGTTTCTAAACTTGAA 1204
Query 1116 ACAATCAACTCTTTTCAATCAAACGTTGAGAAAGAGACGCAAAAGGTGGAAAATGGCTCG 1175
|||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct 1205 ACAACCAACTCTTTTCAATCAAGTGTTGAGAAAGAGACGAAAAAGATGGAAAATGGCTCG 1264
Query 1176 ATTTCCTTTCCAAGCAATGAAGATATGAATTCTGAAGGAACATCTTGGGCCTTTAAGCAG 1235
||||||||||||||||||| |||| ||||||||| |||||| ||||||||||||||||||
Sbjct 1265 ATTTCCTTTCCAAGCAATGGAGATGTGAATTCTGGAGGAACTTCTTGGGCCTTTAAGCAG 1324
Query 1236 CCATCTTTGGAAACTGGAAACGAGAAAGAAGAAAAGGAAGTGCAGACAGGCAAGCCCAAG 1295
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1325 CCATCTTTGGAAATTGGAAACGAGAAAGAGGAAAAGGAAGTACAGACAGGCAAGCCCAAG 1384
Query 1296 GGAGTCTTGCCATTGTCCTTTTTCGAGGATGTGAAATCGGAAACCTCTGACACTTTGGTT 1355
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1385 GGAGTCTTGCCATTGTCCTTTTTCGAGGATGAGAAATCGGAAACCTCTGACACTTTGGTT 1444
Query 1356 CATGAAGATAAATTTGTTTTAGCCAGCGATTTTCCTGTGAGAGAGAAAACTAAGGCTCCA 1415
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 CATGAAGATAGTTTTGTTTTAGCCAGCGATTTTCCTGTGAGAGAGAAAACTAAGGCTCCA 1504
Query 1416 AGTCCAACTGTGTCCATTAGTGACTTAATATCAAGTTTATACAGTCAGGTGGAGGAGAAG 1475
||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 1505 AGTCCAACTGTGTCCATCAGTGACTTAATATCCAGATTATACAGTCAGGTGGAGGAGAAG 1564
Query 1476 AATGCTGTTAATATTTCAGAAAAGTCTGCAACTGATTCTAACGTAGTAGATAGTGAGGAT 1535
|||||||||||||||| |||||| |||||||||| |||||| | |||| || ||||||||
Sbjct 1565 AATGCTGTTAATATTTTAGAAAACTCTGCAACTGCTTCTAATGAAGTAAATGGTGAGGAT 1624
Query 1536 GATTCATGGGAGTTTCAGGGCCCCAAAAAGCCCATAACAGATTCGGGCATAGCAGAAGGT 1595
||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1625 GATTCATGGGAATTTCAGGGCCCCAAAATGCCCATAACAGATTCAGGCATAGCAGAAGGT 1684
Query 1596 GCTGATGATTTTGACAGTACGTGGGAGTTTCAAGGTCCTTCTCCAGCTTTGAAAAACTCT 1655
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||
Sbjct 1685 GCTGATGATTTTGACAGTACTTGGGAGTTTCAAGGGCCTTCTCCAGCCTTGAAAATGTCT 1744
Query 1656 GATGTTACAGAAATTGTTGATGAGTTTGACGATGATTCCTGGGAGTTTCAAGGTCCAACA 1715
|| || |||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1745 GACGTCACAGAAGTTGTCGATGAGTTTGACGATGATTCATGGGAGTTTCAAGGTCCAACA 1804
Query 1716 CAGCCTGTGAAAGATACAACGTCGAGGATAGGAGATAATGGTTCGTGGGAATATAAACAT 1775
||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1805 CAGCCTGTGAAAGATTCCATGTCGAGGATAGGAGATAATGGTTTGTGGGAATATAAACAT 1864
Query 1776 AGTTCTGTGGAAAATGAAGATTGG-AATCGACCCTCTGTTCCAAATGGTTTTGGAGAATT 1834
|||||||| |||||||||| |||| |||| | ||||||||||||||||||||||||||||
Sbjct 1865 AGTTCTGTCGAAAATGAAG-TTGGGAATCAATCCTCTGTTCCAAATGGTTTTGGAGAATT 1923
Query 1835 GCATGA-AAAACCAGTAATTCGGATAGAACCTAGTGATTACCAAGATCTCTTTCATAAGC 1893
|||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1924 GCATGATAAAAC-AGTAATTCGGATAGAGCCTAATGATTACCAAGATCTCTTTCATAAGC 1982
Query 1894 TGAAGATTGAATTATACCACATTGCTCTGA-ACCATCTCGAGAAATTAAAGGAAGCTCGT 1952
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 1983 TGAAGATTGAATTATACCACATTGCTCT-ATATCATCTCGAGAAATTAAAGGAAGCTCGT 2041
Query 1953 GACAAGGCTGCTGATTCTGATGAAGTCCTTGAAGTTCAAAAATGCGACAGTGAAATCGAG 2012
||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 2042 GACAAGGCTGCGGATTCTGATGAAGT--T-------CAAAAATGCGACAGTGAAATCGAG 2092
Query 2013 GATCTGCAAAACTTGCTGAACAATGATGTGTTGATCCGTGGAGTCAACTTAGAAAGTCTC 2072
||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct 2093 GATCTGCAAAACTTGCTGAACAATGATGTTTTGATCAGTGGAGTCAACCTAGAAAGTCTT 2152
Query 2073 CAACCAAGATCCTCTGGCA-GTACTGAACTT-ATTAAAGTTATCCAGGAGCCAAAGTTTC 2130
|||||| |||| ||||||| | ||||||||| || || | | ||||||||||||||||||
Sbjct 2153 CAACCAGGATCTTCTGGCATG-ACTGAACTTTAT-AAGGCTCTCCAGGAGCCAAAGTTTC 2210
Query 2131 GACCACTTGATTCAGAAGATCTCCTGACAGAGAGATTGTTATCAG 2175
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 GAGAACTTGATTCAGAAGATCTCCTGACAGAGAGATTGTTATCAG 2255
Score = 1402 bits (759), Expect = 0.0
Identities = 876/931 (94%), Gaps = 14/931 (2%)
Strand=Plus/Plus
Query 2175 GCAGAGAAGGACTGGAAATCAACAATCGAATTACTCAAACACGCTACGCTGACCCTGAAG 2234
|||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||
Sbjct 2285 GCAGAGAAGGACTGGAAATCAACAATCGAACTACTCAAACACGCCACACTGACCCTGAAG 2344
Query 2235 ATCCTAAACATGGGTTCACCTGAGCAACAGTCGAAATACGCTTCAACTTGGTTTGAAATT 2294
||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2345 ATCATAAACTTGGGTTCTCTTGAGCAACAGTCGAAATACGCTTCAACTTGGTTTGAAATT 2404
Query 2295 GCTTCGGCCTGTGCTCAAGAATTGCGACAAGCTGCATCCATTTGGAAGCAGGTGATTAAA 2354
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2405 TCTTCGACCTGTGCTCAAGAATTGCGACATGCTGCATCCATTTGGAAGCAGGTGATTAAA 2464
Query 2355 TATGATGTTCAAGAAGAAATCCTATCTAAACCTCAAGGGAAGAGCTATGCTCTCTCAGTG 2414
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2465 AATGATGTCCAAGAAGAAATCCTATCTAAACCTCAAGGGAAGAGCTATGCTCTCTCAGTG 2524
Query 2415 GGAGAAATTTACAGAGTAGTAAAAATTCTGAGAGTATCAACCAGATTATATAAACCATGG 2474
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 2525 GGAGAAATTTACAGAGTAGTAAAAATTCTGAGAGCATCAACCAGATTATATAAACCGTGG 2584
Query 2475 ATTTTATTATCTCCAACATCATCCAATGTGTTGGCTGTTCTGGACGAGTGTGTGAAGTTG 2534
||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 2585 ATTTTATTAGCTCCAACATCATCCAATGTGTTGGCTGTTCTGGATGAGTGTTTGAAGTTG 2644
Query 2535 TGGTTGAGCTCTGGACTAGTAGAAGCTCTGCTGAATGGTCATGACGATTCTGCTGATCAA 2594
|||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 2645 TGGTTGAGCTCTGGGCTAGTAGAAGCTCTGCTGAATAGTCATGACGATTCTGCCGATCAA 2704
Query 2595 CTTCTAGAATCAATCAAGTATATAAACGAAGTTGACGCTTCCACGCT-TCACACCTGCAT 2653
|||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||
Sbjct 2705 CTTCTAGAATCAATCAAGTATATAAACGAAGTTGACGCTTTCACGCTCT-ACACGTGCAT 2763
Query 2654 AACCTCAGCCACATCACCCACATGCTACATCTCTGGGCTAAATACCGACATAGTACCAGG 2713
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 2764 CACCTCAGCCACATCACCCACATGTTACATTTCTGGGCTAAATACTGACATAGTACCAGG 2823
Query 2714 AATCAAGACGGTGGAGTGGAACGGAGAGCATTACTTGCTACCACTTGCGAATCTATGGGC 2773
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2824 AATCAAGACGGTGGAGTGGAACGGAGAGCATTACTTGCTACCTCTTGCGAATATATGGGC 2883
Query 2774 TAATCTGATCAGCCGCGATCCACCGAACCTTCCTGGCCACCATTTTCCTCTTCTCTCTTA 2833
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2884 CAATCTGATCAGCCGCGATCCACCGAACCTTCCTGGCCACCATTTTCCTATTGTCTCTTA 2943
Query 2834 GAAGAAAGAAGAAACCTACACTACACGCATAACTCACCCGGCAAGCTATTCTCACCGCAG 2893
||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2944 GAATAAAGAAGAAACATACACTACACTCATAACTCACCCGGCAAGCTATTCTCACCGCAG 3003
Query 2894 AGCATTTTCGACCAAAACATATATCCTTCCATACACCTATACTTATTTGTTTATAATGTT 2953
||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 3004 AGCATTTTCGACCAAAACA-A-AT------ATACACCTATACTTATTTGTTTATAATGTT 3055
Query 2954 TGATTTTGTTTTGGTCGTTGTATTGTAATTTATAAT-GAATGGGTATGG-TTTCATTAAT 3011
|||||| ||||||||||||||||||||||||||| | |||||||| ||| ||||||||||
Sbjct 3056 TGATTT-GTTTTGGTCGTTGTATTGTAATTTATA-TCGAATGGGTTTGGGTTTCATTAAT 3113
Query 3012 TGAGCACATTCCCAGGTTTTACAGATGATATATTTTTGTATCGAACGAAGCAATAAGTCA 3071
|||| | ||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 3114 TGAGAATATTCCCAGGTTTTACGGAGGATTTATTTTTGTATCGAACGAAGCAATAAGTCA 3173
Query 3072 ATATAATGATTTCATTTATTTTTACAATGTC 3102
||||||||||||||||||||||||||||||
Sbjct 3174 GTATAATGATTTCATTTATTTTTACAATGTC 3204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 154263349725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5