BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474784
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56220.3 | Symbols: | Dormancy/auxin associated family prot... 872 0.0
> AT1G56220.3 | Symbols: | Dormancy/auxin associated family protein
| chr1:21043349-21044738 FORWARD LENGTH=757
Length=757
Score = 872 bits (472), Expect = 0.0
Identities = 622/688 (90%), Gaps = 35/688 (5%)
Strand=Plus/Plus
Query 1 ACAACAAG-TTTCAAAAAACCCCAAAAACTTTAGATTCTTAACAATTTCAACCCTATGGG 59
||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 12 ACAAC-AGATTTTAAAAAACCCCAAAAACTTTACATTCTTAACAATTTCAACCCTATGGG 70
Query 60 CTTACTTGATCATCTCTGGGATGATACCGTCGCTGGTCCACGGCCAGAAAACGGCCTTGG 119
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 71 CTTACTTGATCATCTCTGGGATGATACTGTCGCTGGTCCACGGCCAGAGAACGGCCTTGG 130
Query 120 CAAGCTTCGTAAACACCATACCTTCAGTTTCCGACCTAGCTCCGGCAATGAACAACCGGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 131 CAAGCTTCGTAAACACCATACCTTCAGTTTCCGACCTAGCTCCGGCAATGATCAATCGGA 190
Query 180 AGCTGGAAGTGCGAGATCGTACGGTGAGGATTCGCTACCGGAAGAGGCTGTGAAAGTTAC 239
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 191 AGCTGGAAGTGCGAGATCGTACGGTGAGGATTCGCTACCGGAAGAAGCAGTGAAAGTTAC 250
Query 240 AAGAAGCATCATGATTATTAAACCACCGGGTTATCAAGGCGGTTCAGCTCCGGCTTCTCC 299
| | || |||||||| ||||||||||||||||| |||||| |||||||||| |||||
Sbjct 251 ACGTAGTATCATGATAATTAAACCACCGGGTTACCAAGGCAGTTCAGCTCCAGCTTC--- 307
Query 300 GGCTTCTCCGGCCGGTTCAACTCCGCCGCTATCTCCTTTCTCTCCGCCGCTGTCTCCGTT 359
| | || | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 308 G-C--CT--G-CCGGTTCAACTCCGCCGCTATCACCTTTCTCTCCGCCGCTGTCTCCGTT 361
Query 360 CTCTGCAAACGCAGGAGGAAAGGAACCCTTTCGGTTTAGGAGACGGTCGACGTCGGATGC 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CTCTGCAAACGCAGGGGGAAAGGAACCCTTTCGGTTTAGGAGACGGTCGACGTCGGATGC 421
Query 420 GTTCGATAAGGCAGCAGGAGGATCAGAGACTGGACCAAGGAGCTCTCCTCCTACTTACGG 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GTTCGAGAAGGCAGCAGGAGGATCAGAGACTGGACCAAGGAGCTCTCCTCCTACTTACGG 481
Query 480 CATGTGATCTCTAATA-A-AAT-CA--T---GAAAAAGAGA-GAAGAACAAGAAAACAGA 530
|||||||||||||| | | || || | |||||||||| || ||| |||||||||||
Sbjct 482 CATGTGATCTCTAACACACAACACAAGTCTTGAAAAAGAGAAGA-GAAGAAGAAAACAGA 540
Query 531 GTACCC----TTAACCGCTGTCGTTTTCACAACATGAAGTGGTTGTTTTTT-GCTTTTGT 585
|||||| |||| || |||||||| || ||||||||||| ||||||| ||||||||
Sbjct 541 GTACCCACCCTTAAACGATGTCGTTTAGACTGCATGAAGTGGTGGTTTTTTTGCTTTTGT 600
Query 586 AGGCCAAAGAGGTGTTC--T---CT-T-ATGGGTGCGTGTATGAGTTTGTTTGTGTGTTT 638
||||||||||||||||| | || | ||| |||||||||||||||||||||||||||
Sbjct 601 AGGCCAAAGAGGTGTTCAGTGTTCTCTTATGTATGCGTGTATGAGTTTGTTTGTGTGTTT 660
Query 639 GTTTCT-ATATGTAATCTCGTCtttttt 665
|||| | |||||||||||||| ||||||
Sbjct 661 GTTTTTTATATGTAATCTCGT-TTTTTT 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5