BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474809 Length=1789 Score E Sequences producing significant alignments: (Bits) Value AT1G56460.2 | Symbols: | HIT zinc finger ;PAPA-1-like conserve... 2239 0.0 > AT1G56460.2 | Symbols: | HIT zinc finger ;PAPA-1-like conserved region | chr1:21146239-21149805 FORWARD LENGTH=2166 Length=2166 Score = 2239 bits (1212), Expect = 0.0 Identities = 1375/1452 (95%), Gaps = 18/1452 (1%) Strand=Plus/Plus Query 347 GAAGTAACCAAGTGAGGCAAGGTGGAGGCCACAGCACTGCATCTACTGAAGGGTTTCTTG 406 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 532 GAAGTAACCAAGTGAGGCAAGGTGGAGGCCACAGCACTGCATCCACTGAAGGGTTTCTTG 591 Query 407 TCCCTTGT-AAAAGAAAAGACTCCATTGACACAACAGAGCGTCGAGCTGGTTTTGATGAG 465 | ||| || ||||| |||||| | |||||||| ||||| ||||||||||||||||||||| Sbjct 592 TACCTAGTAAAAAG-AAAGACACAATTGACACGACAGAACGTCGAGCTGGTTTTGATGAG 650 Query 466 CATACCATCAAGAAGGTTAAACTCAAACTCGGTGGTTCGTCAAAAACTATAAATGTAGTA 525 ||| |||||||||||||||||||||||| |||||||||||||||||||||||| || || Sbjct 651 AATATCATCAAGAAGGTTAAACTCAAACTTGGTGGTTCGTCAAAAACTATAAATATAATA 710 Query 526 TCTGCATCTGATGGTGCTTCTGATATTGGGTTGTGTTCGACAAAGTCGTCCCATGCATCA 585 || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 711 TCAGCATCCGATGGTGCTTCTGATATTGGATTGTGTTCGACAAAGTCGTCCCATGCATCA 770 Query 586 GATAATGTCTTGGGGATTGGGCAGACTAACCAGGAGATTTCAAACGAGAGATCCACTAAA 645 ||| ||| ||||||||||||||||||| ||||||| |||||||||||| |||| |||||| Sbjct 771 GATGATGCCTTGGGGATTGGGCAGACTTACCAGGAAATTTCAAACGAGCGATCGACTAAA 830 Query 646 GAAAGAGGGACACCGTGGGACACTGCAAGCAAAGCAGATTCATGTAATGATACGCGAGTT 705 |||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| | Sbjct 831 CTAAGAGGGACACCGTTGGACACTGCAAGCAAATCAGATTCATGTAATGATACCCGAGAT 890 Query 706 AGCAAAACGAATACAAATCCAATTCGTAAAAGCAATCGGATTTCTAAACGACGTGTTCTG 765 |||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 891 AGCAAAGCGAACACAAATCCTATTCGTAAAAGCAACCGGATTTCTAAACGACGTGTTCTG 950 Query 766 GATGAGGAACTCGATAGTCTTGATGATGATGATGAAGAAATTCAGTTTCTCAAAAGGATG 825 ||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| Sbjct 951 GATGAAGAACTCGATAGTCTTGATGATGATGACGAAGAAATTCAATTTCTCAGAAGGATG 1010 Query 826 AAAATGGCTAAAGTTGTGGCTGT-G--GAAGATGTTGATGACGATGAAGAAAGGAGCAGA 882 ||||||||||||||||||||||| | ||||||||||||||||||||||| |||| |||| Sbjct 1011 AAAATGGCTAAAGTTGTGGCTGTAGAAGAAGATGTTGATGACGATGAAGACAGGACCAGA 1070 Query 883 AAACATAAAAAGCTTTCCAAGGTAATGAAACAAATTGTAGAATTCCCACGTGGTGTAGGA 942 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1071 AAACATAAAAAGCTTTCCAAGGTAATGAAACAAAATGTAGAATTCCCACGTGGTGTAGGA 1130 Query 943 ACATCAGAAAAGTCAGCCAAGAAGGATAAGATGGGAAAAGCATTT---GATACTGATTAT 999 ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 1131 ACATCAGAAAAATCAGCCAAGAAGGATAAGATGGGAAAAGCATTTGACGATGCTGATTAT 1190 Query 1000 GTCAAGGACGATGATGATGAGGAAGAAGAAGAGGCTGTTTCAGATGTTGAGCTAGAAAAT 1059 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 GTCAA-G--GATGATGATGAGGAAGAAGAAGAGGCTGTTTCAGATGTTGAGCTAGAAAAT 1247 Query 1060 AAGAGCACGAGAACTAGAAGAAGAGGAGCTGAAGATGGTCAGAGTGAAGTTAAGACAGAA 1119 |||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1248 AAGAGCGCGAGAACT---AGAAGAGGAGCTGAAGAAGGTCAGAGTGAAGTTAAGACAGAA 1304 Query 1120 ATGACTGTGACTACTCGTCGACGTTCTGGACATAGTGGAAACCTCATCGAGTTTCCTCGT 1179 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1305 ATGACTGTGACTACTCGTCGACGTTCTGGACATAGTGGAAACCTTATCGAGTTTCCTCGT 1364 Query 1180 GGCCTACCTCCAGCTCCACCTAGAAAGCGAAAAGAAAATGGATTAGAGGTTGATCAGCAA 1239 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1365 GGCCTACCTCCTGCTCCACCTAGAAAGCGAAAAGAAAATGGATTAGAGGTTGATCAGCAA 1424 Query 1240 CTAAAGAAAGCTGAGGCTGCCCAGAGACGTAAATTGCAAGTCGAAAAGGCAGCAAGAGAA 1299 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1425 CTAAAGAAAGCTGAGGCTGCCCAGAGACGTAAATTGCAAGTCGAAAAGGCAGCTAGAGAA 1484 Query 1300 TCAGAGGCTGAGGCAATCAGGAAGATTCTGGGCCAAGACTCTAGCagaaagaagaaggaa 1359 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1485 TCAGAGGCTGAGGCAATCAGGAAGATTCTGGGACAAGACTCTAGCAGAAAGAAGAAGGAA 1544 Query 1360 gataagataaagaaacgccaagaagacaaagccaaggagaagGCTGCAGACTCGATCGCC 1419 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1545 GATAAGATAAAGAAACGCCAAGAAGACAAGGCCAAGGAGAAGGCTGCAGACTCGATTGCC 1604 Query 1420 CGTAGATCAGACACAGTGAAGTGGGTGATGGGTCCTTCAGGAACCATCGTAACCTTCCCA 1479 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1605 CGTAGATCAGACACAGTGAAGTGGGTGATGGGTCCTTCAGGAACCATAGTAACCTTCCCA 1664 Query 1480 GAAGAACTTGGATTGCCAAGTATATTCAACTCTACACCACACAGTTACCCTCCACCGCGA 1539 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1665 GAAGAACTTGGATTGCCAAGTATATTCAACTCTACACCACACAGTTATCCTCCACCGCGG 1724 Query 1540 GAAAGATGTGCGGGTCCAGAATGTACAAACCCATACAAATACAGAGATTCAGAGTCAAAT 1599 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1725 GAAAGATGTGCGGGTCCAGAATGTACAAACCCATACAAATATAGAGATTCAGAGTCAAAT 1784 Query 1600 CTTCCATTGTGCAGCCTCCGATGCTACAAAGCAATCAAAGGCTAAGTGATGGATATATTG 1659 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1785 CTTCCATTGTGCAGCCTCCGATGCTACAAGGCAATCAAAGGCTAAGTGATGGATATATTG 1844 Query 1660 TGATCATACTATT-GTATAAAATAATATTTATATCGTTCATGTAAATACTAATAATAAAG 1718 ||||||||||||| |||||| ||||||||| || |||||||||||||||||||||||||| Sbjct 1845 TGATCATACTATTTGTATAATATAATATTT-TAGCGTTCATGTAAATACTAATAATAAAG 1903 Query 1719 CACTATATCATACTGTTTGTTGTTCAA-CAAGAGTTGAATGTCTATAAACATAGATGACT 1777 |||||||||||||||||||||||| || ||||| |||||||| |||||||||| |||| | Sbjct 1904 CACTATATCATACTGTTTGTTGTT-AAGCAAGATTTGAATGTTTATAAACATATATGAAT 1962 Query 1778 ATATCATACTGT 1789 |||||||||||| Sbjct 1963 ATATCATACTGT 1974 Score = 326 bits (176), Expect = 6e-88 Identities = 200/212 (94%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 95 CTCAAAGTTCGATCCTTTGAATCTAAATCAGGTATGTGAAGCTTTGATTTTTGAGTCAAG 154 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 160 CTCAAAGTTCGATCCTTTGAATCTAAATCAGGTATGTGGAGCTTTGATTTTTGAGTGAAA 219 Query 155 CAAGACCAATTATGGAAAGTCTTGGAGGTATTGGATTCAGTAATACTAACAGTGCAACAA 214 ||| | |||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 220 CAAAAACAATTATGGAAAGTCTTGGAGGTATTGGATTCAGTAATACGAGTAGTGCAACAA 279 Query 215 AGAAGAAGAGAAGCACCACATTGCGTCGGCCTTGGAATGAGCGACAGTTACAGGATTCTT 274 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 280 AGAAGAAGAGAAGCACTACATTGCGTCGGCCTTGGAATGATCGACAGTTACAGGATTCTT 339 Query 275 CGTCATTGCCATCCACACCAGTCACTGACAAT 306 | ||||||||||||||||||||| |||||||| Sbjct 340 CTTCATTGCCATCCACACCAGTCGCTGACAAT 371 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88503560835 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5