BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474819
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56600.1 | Symbols: AtGolS2, GolS2 | galactinol synthase 2 |... 1705 0.0
> AT1G56600.1 | Symbols: AtGolS2, GolS2 | galactinol synthase 2
| chr1:21207537-21209596 FORWARD LENGTH=1396
Length=1396
Score = 1705 bits (923), Expect = 0.0
Identities = 1220/1352 (90%), Gaps = 66/1352 (5%)
Strand=Plus/Plus
Query 1 ACTCATcacactacacacaaactcaaacaaaacaaaaacaaacacaaa-ac--aca-a-a 55
||||| ||||||||||||||||| |||| ||||||||||||||||||| || ||| | |
Sbjct 1 ACTCAGCACACTACACACAAACT-AAACGAAACAAAAACAAACACAAACACAAACACAGA 59
Query 56 aGTTTTTTCTAAAAGAC-AAGAAGATGGCACCTGAGATCAATACCAAACTTACCAG-ACC 113
||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||
Sbjct 60 AGTATTTTCTAAAAGACAAAGAAGATGGCACCTGAGATCAATACCAAACTCACC-GTACC 118
Query 114 GGTCCTCTCAGCCACCGCTTACGGCGGAGAAAAGAGAGCTTACGTGACTTTCCTCGCCGG 173
||||| ||||| || | ||||||||||||||| || |||||||||||||| || ||
Sbjct 119 GGTCCACTCAG-CA--AC---CGGCGGAGAAAAGAGGGCGTACGTGACTTTCCTTGCTGG 172
Query 174 AACTGGAGACTATGTGAAAGGAGTGGTGGGTCTTGCTAAGGGGTTAAGGAAAACTAAGAG 233
|||||||||||| |||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 173 AACTGGAGACTACGTGAAAGGGGTGGTGGGTCTTGCTAAGGGGCTAAGGAAAGCTAAGAG 232
Query 234 CAAGTATCCACTTGTGGTGGCGGTTTTGCCGGATGTACCGGAGGATCACCGGAAACAGCT 293
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 233 CAAGTACCCACTCGTGGTGGCGGTTTTGCCGGATGTACCGGAGGATCACCGGAAACAGTT 292
Query 294 GGTGGATCAAGGCTGTGTCGTTAAGGAGATAGAGCCGGTATATCCACCGGAGAATCAAAC 353
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 293 GGTGGATCAAGGCTGTGTTGTTAAGGAGATAGAGCCGGTTTATCCACCGGAGAATCAAAC 352
Query 354 TGAGTTTGCTATGGCATACTACGTTATCAACTACTCTAAGCTTCGTATTTGGAAGTTTGT 413
|||||||||||||| ||||| || || |||||||||||||||||||| ||| |||| ||
Sbjct 353 CGAGTTTGCTATGGCTTACTATGTCATTAACTACTCTAAGCTTCGTATCTGGGAGTTCGT 412
Query 414 GGAGTACAGCAAGATGATATACTTGGACGGAGACATACAAGTGTTCGACAACATAGATCA 473
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 413 GGAGTACAACAAGATGATATACTTGGACGGTGACATACAAGTGTTCGACAACATAGATCA 472
Query 474 CTTGTTTGATCTTCCAAACGGCCAATTCTACGCAGTCATGGACTGTTTCTGCGAGAAGAC 533
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 473 CTTGTTTGATCTTCCAAACGGCCAATTCTATGCAGTTATGGACTGTTTTTGCGAGAAGAC 532
Query 534 ATGGAGCCACTCGCCACAGTACAAGATCGGTTATTGCCAACAGTGTCCGGACAAGGTGAC 593
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ATGGAGTCACTCGCCACAGTACAAGATCGGTTATTGCCAACAGTGTCCGGACAAGGTGAC 592
Query 594 ATGGCCAGAGGCCGAGCTAATTGGTCCTAAGCCGCCTTTGTATTTCAACGCCGGTATGTT 653
||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 593 ATGGCCAGAGGCCAAGC---TTGGTCCTAAGCCGCCTTTGTACTTCAACGCCGGTATGTT 649
Query 654 CGTTTACGAGCCTAACCTCTCCACTTATCATAGCCTCTTGGAGACTGTCAAAGTTGTGCC 713
|||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||
Sbjct 650 CGTTTACGAGCCTAACCTCTCCACTTATCATAACCTCTTGGAGACGGTCAAAATTGTGCC 709
Query 714 TCCTACTCTTTTTGCTGAACAGGACTTTTTGAATATGTACTTCAAGGACATATACAAGCC 773
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 710 TCCCACTCTTTTTGCTGAACAGGATTTTTTGAATATGTACTTCAAGGACATATACAAGCC 769
Query 774 AATACCACCGGTGTATAACTTGGTCTTGGCAATGCTTTGGAGGCATCCAGAGAATATAGA 833
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 AATACCACCAGTGTATAACTTGGTCTTGGCAATGCTTTGGAGGCATCCAGAGAATATAGA 829
Query 834 GCTTGACCAAGTCAAAGTTGTTCACTACTGTGCTGCTGGTGCTAAGCCTTGGAGATTCAC 893
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 830 GCTTGACCAAGTCAAAGTTGTTCACTACTGTGCTGCTGGTGCTAAACCTTGGAGATTCAC 889
Query 894 TGGAGAAGAAGAGAACATGGACAGAGAAGACATTAAGATGCTGGTCAAGAAATGGTGGGA 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TGGAGAAGAAGAGAACATGGACAGAGAAGACATTAAGATGCTGGTCAAGAAATGGTGGGA 949
Query 954 CATATACAATGACGAGTCTCTTGATTACAAGAACGTTGTTATTGAAGACGGCCACAAGAA 1013
||| ||||||||||||||||||||||||||||| ||||| |||| ||| ||||||||||
Sbjct 950 CATTTACAATGACGAGTCTCTTGATTACAAGAATGTTGTCATTGGGGACAGCCACAAGAA 1009
Query 1014 GCAACAGACACTTCAGCAGTTTATCGAAGCTTTGTCCGAAGCCGGTGTGCTTCAGTACGT 1073
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 1010 GCAACAGACACTTCAGCAGTTTATCGAAGCTTTGTCTGAAGCCGGTGCGCTTCAGTATGT 1069
Query 1074 CAAAGCTCCATCTGCAGCTTAGACACAATAT-A--ATC-A---------T-CA-A-G--- 1114
|||||||||||||||||||||| |||||||| | ||| | | || | |
Sbjct 1070 CAAAGCTCCATCTGCAGCTTAGCCACAATATAATCATCGAGCTCGTTGCTGCATACGCCT 1129
Query 1115 C-T-ATGA-T-T-ATAATG----TTGCTTTAGTTTGAAACTTGTTTATAGGACCATATAG 1165
| | |||| | | ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1130 CTTCATGACTATAATATTGCTTATTGCTTTAGTTTGAAACTTGTTTATAGGACCATATAG 1189
Query 1166 ----------------TGAGATTGTGTTACTATTAT-ATTTTTATGGGTTTTGGAGGATT 1208
|||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1190 TTATACATATACTATATGAGATTGTGTTACTATTTTAATTTTTATGGGTTTTGGAGGATT 1249
Query 1209 TTTTAAATCTCCATATCCGTTTTTACTTACTATATATACTAGATTATTGAGAAGGAACAA 1268
|||||||| |||| ||||||||||||||| | ||||||||| || |||| ||||||||
Sbjct 1250 TTTTAAATTTCCACATCCGTTTTTACTTA-TC-ATATACTAGCTTGTTGATTAGGAACAA 1307
Query 1269 TGTTTCCTATA-TATTGTAAAGTAAACTTGTT 1299
|| | || | | |||||||||||| |||||||
Sbjct 1308 TGCTCCCGACAATATTGTAAAGTATACTTGTT 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64909304685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5