BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474828 Length=1691 Score E Sequences producing significant alignments: (Bits) Value AT1G56660.1 | Symbols: | unknown protein; Has 665200 Blast hit... 1580 0.0 > AT1G56660.1 | Symbols: | unknown protein; Has 665200 Blast hits to 205811 proteins in 4684 species: Archae - 3320; Bacteria - 107592; Metazoa - 249086; Fungi - 76753; Plants - 38542; Viruses - 3008; Other Eukaryotes - 186899 (source: NCBI BLink). | chr1:21237888-21240558 FORWARD LENGTH=1821 Length=1821 Score = 1580 bits (855), Expect = 0.0 Identities = 1228/1397 (88%), Gaps = 69/1397 (5%) Strand=Plus/Plus Query 1 AAGACGCAAGAATTGGATCCAAAAGAAAAGGGAGAGAATGTTGAGGTGGAGATGGAAGTG 60 |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 123 AAGACGCAGGAATTGGATCCAAAAGAGAAGGGGGAAAATGTTGAGGTGGAGATGGAAGTG 182 Query 61 AAAGCCAAA-TCAAGTGagaaggtaaaaacaaagaatggggaaaagagtggagggaaatc 119 ||| |||| |||| ||||||||| ||| ||||||| | ||| ||||| | || ||||| Sbjct 183 -AAGGCAAAGTCAATTGAGAAGGTTAAAGCAAAGAAAGATGAAGAGAGTAGTGGAAAATC 241 Query 120 aaagaagaaaaaggaaaaagaaaagacaaagggcaagaaa-gat-gactcagaggtaaaa 177 ||| ||||| |||||||||| ||||||||| ||| | | ||||||||||||||| Sbjct 242 ---CAAG---AAGGACAAAGAAAAGAAAAAGGGCAA-AAACG-TGGACTCAGAGGTAAAA 293 Query 178 gaagataaagatgacaaaCATGACAAGAAGAAAGATGGAAAAGTTGTCTCCAAGAAACAT 237 ||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||| Sbjct 294 GAAGATAAAGATG------ATGACAAAAAGAAAGATGGAAAAATGGTCTCCAAGAAACAT 347 Query 238 GAAGAAGGCCATGGAGATATGAAGGTTAAAGACAGCGATGTGAAAGTGGAAGAGCATGAG 297 |||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| Sbjct 348 GAAGAAGGCCATGGAGATCTGGAGGTTAAAGAGAGCGATGTGAAAGTGGAAGAGCATGAG 407 Query 298 AAGGAACACAAGAAGGGCAAAGAGAAGAAACACGAGGATGTATCAGAACGAAACGAGGAG 357 |||||||||||||||||||||||||||||||||||||| || | |||| ||| || | Sbjct 408 AAGGAACACAAGAAGGGCAAAGAGAAGAAACACGAGGA-GT-T-AGAA-GAA--GA--A- 458 Query 358 TTagaagaaga-aaaggaaggtaaaaagaagaagaagaaagagaaggatgaatcaggtgc 416 | |||||| ||| ||| || ||||| || || || ||||||||||| || ||| | Sbjct 459 --A-AAGAAGGTAAA--AAG--AAGAAGAATAA-AA-AA-GAGAAGGATGAGTCGGGTCC 508 Query 417 agagggaaaaaataagaaggcagataaagagaagaaaCATGAGGATGTATCACAACAAAA 476 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 509 AGAGGAAAAAAATAAGAAGGCAGATAAAGAGAAGAAACATGAGGATGTATCACAAGAAAA 568 Query 477 GGAGGAGTTAGAAGAGGAAGATGGTaaaaagaacaaaga-gaaagggaaggatgaatcag 535 ||| |||||||||||||||||||||||||||||||| || ||||| ||| |||||||||| Sbjct 569 GGAAGAGTTAGAAGAGGAAGATGGTAAAAAGAACAA-GAAGAAAGAGAAAGATGAATCAG 627 Query 536 gtacagaggagaaaaagaagaaaccagaaaaagaaaagaaacataaagaagaatccaagg 595 |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| Sbjct 628 GTACAGAGGAGAAAAAGAAGAAACCAAAAAAAGAAAAGAAACAAAAAGAAGAATCTAAGA 687 Query 596 gtaaggaagacaagaagctgaaggggaagaagggaaatggagagaaggatgagcct-gac 654 |||| |||||||| ||| ||||||| ||||||| ||| |||||||||| ||| ||| || Sbjct 688 GTAATGAAGACAAAAAGGTGAAGGGAAAGAAGGAAAAGGGAGAGAAGGGTGA-CCTTGAG 746 Query 655 aaagaagat-aa-agaa-aagaa-gaa--tgatgcaacagatcaagagatgaaagaaaaa 708 ||||||||| || |||| ||||| ||| ||||| ||||||||||||||||||||||||| Sbjct 747 AAAGAAGATGAAGAGAAGAAGAAAGAACATGATGAAACAGATCAAGAGATGAAAGAAAAA 806 Query 709 gatggtaagaagaacaagaagaaagagaaagatgaatcaggtacagaggaaaaaaagaaa 768 ||| |||| |||||||||||||||||||||||||||||| || | |||||||||||||| Sbjct 807 GATAGTAAAAAGAACAAGAAGAAAGAGAAAGATGAATCATGTGCGGAGGAAAAAAAGAAG 866 Query 769 aagcaagagaaagagaacaaacagaaagacgaat-tgacggataaagaagacaagaagct 827 |||| || |||||||| ||| |||||||||||| | || || || |||||||||||||| Sbjct 867 AAGCCCGATAAAGAGAAGAAAGAGAAAGACGAATCT-ACTGAGAAGGAAGACAAGAAGCT 925 Query 828 gaaggg---gaa-g-aa-gg-at-ga-gcatgagaaagaagacgaaggaaagaaga--aa 876 |||||| ||| | || || | || || ||| |||||||| ||||||||||||| || Sbjct 926 GAAGGGAAAGAAAGGAAAGGGAGAGAAGCCTGAAAAAGAAGATGAAGGAAAGAAGACGAA 985 Query 877 -gaacatgatgcaacagatcatgagatgaaagaagaagaagtagaacataaggagggaaa 935 ||||||||||||||||| || |||||| | || |||| | || |||||||||||||| Sbjct 986 AGAACATGATGCAACAGAGCAAGAGATGGATGATGAAGCCGCCGATCATAAGGAGGGAAA 1045 Query 936 gaaaaagaagaataaagataaggcaaagaagaaggaaaccg--at-ga-ga--tatgtga 989 |||||||||||||||||||||||| |||||||||||||||| || || || ||||||| Sbjct 1046 GAAAAAGAAGAATAAAGATAAGGCGAAGAAGAAGGAAACCGTCATCGATGAGGTATGTGA 1105 Query 990 gaaagaaacaaaagataaagatgaggatgaaggagaaaccaagcagaaaaagaataagaa 1049 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1106 GAAAGAAACAAAAGACAAAGATGATGATGAAGGAGAAACCAAGCAGAAAAAGAATAAGAA 1165 Query 1050 aaaggagaagaagaacgaaaagggcgaaaaagatgaaaaaaaagacaagaagaaggagaa 1109 |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1166 AAAGGAGAAGAAGAGCGAAAAGGGCGAAAAAGATGTAAAGGAAGACAAGAAGAAGGAGAA 1225 Query 1110 aCCCTTTGAAACTGAAGTGATATCaagagatataaaattagaagaatcagaagctgagaa 1169 ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1226 TCCCCTTGAAACTGAAGTGATGTCAAGAGATATAAAATTAGAAGAACCAGAAGCTGAGAA 1285 Query 1170 gaaggaagaagatgacaatgaagagaagaataaatctaaagaagaaggcggtgagagtga 1229 ||||||||||||||| | |||||||||||| |||||||||| |||||| ||||||||||| Sbjct 1286 GAAGGAAGAAGATGATACTGAAGAGAAGAAGAAATCTAAAGTAGAAGGGGGTGAGAGTGA 1345 Query 1230 agaggggaagaaaaagaagaagaaagataaaaagaagaacaagaagaaagatacaaagga 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1346 AGAGGGGAAGAAAAAGAAGAAGAAAGATAAAAAGAAGAACAAGAAGAAAGATACAAAGGA 1405 Query 1290 aacgaaaaggacagaggatgaagaagagaagaaagaTCATACTAAAGACGTCAAAATAga 1349 | |||||| ||| ||||| |||||||||||||||||| || |||| ||||| |||||||| Sbjct 1406 ACCGAAAATGACGGAGGACGAAGAAGAGAAGAAAGATGATTCTAAGGACGTTAAAATAGA 1465 Query 1350 agggtcaaaagctgaag 1366 ||||||||||||| ||| Sbjct 1466 AGGGTCAAAAGCT-AAG 1481 Score = 385 bits (208), Expect = 9e-106 Identities = 284/317 (90%), Gaps = 20/317 (6%) Strand=Plus/Plus Query 1394 caaaaactaaggaagaaaagaaagacaaagatgtgaagaagaagaagGGTGGTAATGACA 1453 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1471 CAAAAGCTAAGGAAGAAAAGAAAGACAAAGATGTGAAGAAAAAGAAGGGTGGTAATGACA 1530 Query 1454 TCGGTAAGCTGAAAACGAAGTTGGCGAAGATCGATGAAAAAATAGGAGCCTTAATGGAGG 1513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1531 TCGGTAAGCTGAAAACGAAGTTGGCGAAGATCGATGAAAAAATAGGAGCCTTAATGGAGG 1590 Query 1514 AGAAGGCTGAAATCGAGAATCAGATTAAAGACGCAGAGGGAGAGCAATGATGTGA--A-- 1569 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1591 AGAAGGCAGAAATCGAGAATCAGATTAAAGACGCAGAGGGAGAGCAATGATGTGATGATT 1650 Query 1570 G---A---TA------TG--GG-AGCGGCGTAATGTTATGTAACTGAACTTAATAATATG 1614 | | || || || ||| || ||||||||||||||||||||| |||||||| Sbjct 1651 GTGGAACATAAAAAAATGATGGGAGCAGCTTAATGTTATGTAACTGAACTTGATAATATG 1710 Query 1615 GACTTAGCAACATCCATAGAGAAACTGAAGGCTACATGTTTCTTGGTACAGTTGCACTTA 1674 ||||| |||||||||| |||||| || |||||||||||| |||||||||| ||||||||| Sbjct 1711 GACTTGGCAACATCCACAGAGAAGCT-AAGGCTACATGTCTCTTGGTACATTTGCACTTA 1769 Query 1675 ACTTCAATTTTTCTTTT 1691 |||| ||||||| |||| Sbjct 1770 ACTTAAATTTTTTTTTT 1786 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83583907425 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5