BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474839 Length=378 Score E Sequences producing significant alignments: (Bits) Value AT1G57540.1 | Symbols: | unknown protein; Has 29 Blast hits to... 508 1e-143 > AT1G57540.1 | Symbols: | unknown protein; Has 29 Blast hits to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21310366-21311494 REVERSE LENGTH=512 Length=512 Score = 508 bits (275), Expect = 1e-143 Identities = 305/320 (95%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 59 GAGGGAAATGGCGTTAAGGCAGAAGTTAGGATGGTCAGAGGGAGATTTGATGAGATCTGA 118 ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| || Sbjct 82 GAGAGAAATGGCGTTAAGGCAGAAGTTAGGATGGTCAGAAGGAGATCTGATGAGATCAGA 141 Query 119 TGCCAAGCCATGTTCTAGGCTAATGAGACAAACAGCTGCCATTTTCACTGTTGGTGGAGC 178 ||| ||||||||||| || || |||| ||||||||||||||||||||||||||||||||| Sbjct 142 TGCTAAGCCATGTTCAAGACTGATGAAACAAACAGCTGCCATTTTCACTGTTGGTGGAGC 201 Query 179 TCTTGGCTTCTGGGTTCTCTGCAGACTTCACTATGGTCCAAGGATCACAGTGCCAAGGAG 238 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 202 TCTTGGTTTCTGGGTTCTTTGCAGACTTCACTATGGTCCAAGGATCACAGTGCCAAGGAG 261 Query 239 TCTACGGTGGGCTGGGTGCGGTGCTTTGTCCGTAAGCACATCAACTGCAATGCTTGTCCG 298 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TCTGCGGTGGGCTGGGTGTGGTGCTTTGTCCGTAAGCACATCAACTGCAATGCTTGTCCG 321 Query 299 TCTCTTCAGCCCTGAATGTGAACCACAAAACATTGCTGCGTATGATCACATCAAAACCCC 358 ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 322 TCTCTTCAGCCCTGAATGTGAACCACAAAACATTGCTGCATATGATAACATCAAAACCCC 381 Query 359 TCAAGCTTCACTCCCTTAAA 378 |||||||||||||||||||| Sbjct 382 TCAAGCTTCACTCCCTTAAA 401 Score = 78.7 bits (42), Expect = 4e-14 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 6 GTCTTCTTCCGTCAGGCTCTACGGTGACACAGCCAAAGAAACTACGCATCACCG 59 ||||||||||| || |||| |||| ||||||||||||||||||||||||||||| Sbjct 1 GTCTTCTTCCGACAAGCTCGACGGCGACACAGCCAAAGAAACTACGCATCACCG 54 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17794783146 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5