BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474839

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G57540.1 | Symbols:  | unknown protein; Has 29 Blast hits to...   508    1e-143


> AT1G57540.1 | Symbols:  | unknown protein; Has 29 Blast hits 
to 29 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:21310366-21311494 REVERSE 
LENGTH=512
Length=512

 Score =  508 bits (275),  Expect = 1e-143
 Identities = 305/320 (95%), Gaps = 0/320 (0%)
 Strand=Plus/Plus

Query  59   GAGGGAAATGGCGTTAAGGCAGAAGTTAGGATGGTCAGAGGGAGATTTGATGAGATCTGA  118
            ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct  82   GAGAGAAATGGCGTTAAGGCAGAAGTTAGGATGGTCAGAAGGAGATCTGATGAGATCAGA  141

Query  119  TGCCAAGCCATGTTCTAGGCTAATGAGACAAACAGCTGCCATTTTCACTGTTGGTGGAGC  178
            ||| ||||||||||| || || |||| |||||||||||||||||||||||||||||||||
Sbjct  142  TGCTAAGCCATGTTCAAGACTGATGAAACAAACAGCTGCCATTTTCACTGTTGGTGGAGC  201

Query  179  TCTTGGCTTCTGGGTTCTCTGCAGACTTCACTATGGTCCAAGGATCACAGTGCCAAGGAG  238
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  202  TCTTGGTTTCTGGGTTCTTTGCAGACTTCACTATGGTCCAAGGATCACAGTGCCAAGGAG  261

Query  239  TCTACGGTGGGCTGGGTGCGGTGCTTTGTCCGTAAGCACATCAACTGCAATGCTTGTCCG  298
            ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  262  TCTGCGGTGGGCTGGGTGTGGTGCTTTGTCCGTAAGCACATCAACTGCAATGCTTGTCCG  321

Query  299  TCTCTTCAGCCCTGAATGTGAACCACAAAACATTGCTGCGTATGATCACATCAAAACCCC  358
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct  322  TCTCTTCAGCCCTGAATGTGAACCACAAAACATTGCTGCATATGATAACATCAAAACCCC  381

Query  359  TCAAGCTTCACTCCCTTAAA  378
            ||||||||||||||||||||
Sbjct  382  TCAAGCTTCACTCCCTTAAA  401


 Score = 78.7 bits (42),  Expect = 4e-14
 Identities = 50/54 (93%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  6   GTCTTCTTCCGTCAGGCTCTACGGTGACACAGCCAAAGAAACTACGCATCACCG  59
           ||||||||||| || |||| |||| |||||||||||||||||||||||||||||
Sbjct  1   GTCTTCTTCCGACAAGCTCGACGGCGACACAGCCAAAGAAACTACGCATCACCG  54



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5