BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474842
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57590.1 | Symbols: | Pectinacetylesterase family protein |... 2165 0.0
> AT1G57590.1 | Symbols: | Pectinacetylesterase family protein
| chr1:21327360-21329763 REVERSE LENGTH=1489
Length=1489
Score = 2165 bits (1172), Expect = 0.0
Identities = 1339/1418 (94%), Gaps = 18/1418 (1%)
Strand=Plus/Plus
Query 1 TCTCCATATAAACCAAGTTTTATGATCAAGTCTAAACACATCCATGATCAAGAAGTG-AC 59
||||||||||||||||| | | |||||||||||||| |||||||||||||||||||| |
Sbjct 78 TCTCCATATAAACCAAGGTATGTGATCAAGTCTAAA-ACATCCATGATCAAGAAGTGTA- 135
Query 60 AAATGAAGAAGCTTCTATGGA-TTGGGCTCATTCTCTTAAACATCCATGTAAATGGGATG 118
||||||||||||||||||||| || || |||||||||| ||||||||||||||||| |||
Sbjct 136 AAATGAAGAAGCTTCTATGGAGTT-GGATCATTCTCTTCAACATCCATGTAAATGGAATG 194
Query 119 ATGATGGAGTTTGATGATATGGAATGGTTCACAGATTTCAATGGAAC-AAAGATGTTTGA 177
||||||||||||||||| ||||| |||||||||| |||||||||||| |||| ||||| |
Sbjct 195 ATGATGGAGTTTGATGAAATGGAGTGGTTCACAGTTTTCAATGGAACAAAAG-TGTTTCA 253
Query 178 TACAGAAAATGATGTTTTTTCTGAAGCTAAGTTTCCTATGGTTGGACTCACTCTGATTCA 237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GACTCAAAATGATGTTTTTTCTGAAGCTAAGTTTCCTATGGTTGGACTCACTCTGATTCA 313
Query 238 ATCTGCTGCTGCTAAAGGAGCTGTTTGTTTAGATGGAAGTCTTCCCGGATACCATTTGCA 297
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 314 ATCTGCTGCTGCTAAAGGAGCTGTGTGTTTGGATGGAAGTCTTCCCGGATACCATTTGCA 373
Query 298 TCGCGGGTTTGGTTCAGGAGC-AAGCAATTGGCTTGTTCAATTGGAGGGAGGTGGATGGT 356
||||||||||||||| ||||| || ||||||||| |||||||| ||||||||||||||||
Sbjct 374 TCGCGGGTTTGGTTCCGGAGCGAA-CAATTGGCTCGTTCAATTAGAGGGAGGTGGATGGT 432
Query 357 GTGATACCGTTAGAAATTGTGTATACCGTAAAACCAGTCGTCGTGGATCTTCTTCATATA 416
|||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 433 GTGATACCATTAGAAATTGTGTTTACCGTAAAACCACTCGTCGTGGATCTTCTTCATATA 492
Query 417 TGGAGAAAGTGATACCATTTACCGGCATTCTAAGTAATCAAGCCGCGGAAAATCCAGACT 476
||||||||| ||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 493 TGGAGAAAGAGATACCATTTACCGGCATTCTAAGTGATAAAGCCGCGGATAATCCAGACT 552
Query 477 TTTATAACTGGAATAGAGTAAAAGTTCGGTATTGTGACGGTGGATCGTTTAGCGGGGACA 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 553 TTTATAACTGGAATAGAGTAAAAGTTCGGTATTGTGACGGTGGATCGTTTAGCGGGGATA 612
Query 537 GCGAAAATAAGGCTGCACAACTTCAGTTTAGAGGAATGAGAATATGGTTAGCTGCTATGG 596
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 613 GCGAAAATAAGGCTGCACAACTTCAGTTTAGAGGAAAGAGAATTTGGTTAGCTGCTATGG 672
Query 597 AAGATTTGATGGCAAAAGGAATGCGTCAAGCTAAGCAGGCTCTGCTCTCTGGATGTTCTG 656
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AAGATTTGATGGCAAAAGGTATGCGTCAAGCTAAGCAGGCTCTGCTCTCTGGATGTTCTG 732
Query 657 CTGGAGGTCTTGCGGTGATTTTACGGTGTGATGATTTCGGGAAATTGTTTCCTCCTTCCA 716
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 733 CAGGAGGTCTTGCGGTGATTTTACGATGTGATGATTTTGGGAAATTGTTTCCTCCTTCCA 792
Query 717 CTAGAGTGAAATGTCTGAGTGATGCTGGTTTCTTCCTCGATGCCATCGATGTGTCTGGAG 776
| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 793 CCAGAGTGAAATGTTTGAGTGATGCTGGTTTCTTCCTTGATGCCATCGATGTGTCTGGAG 852
Query 777 GTCGATCTCTTAGACGGTTATACGCCGGTGTGGTCAAATTACAGAATCTGCAAACCAAGC 836
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 853 GTCGATCTCTTAGACGATTATACGCCGGTGTGGTCAGATTACAGAATCTGCAAACCAACC 912
Query 837 TTCCTCAGGATTGTGTAAACCGTCTTAATCCAACTTCGTGTTTTTTCCCACAAAACTTAA 896
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 913 TTCCTCAGTATTGTGTAAACCGTCTTAATCCCACTTCGTGTTTTTTCCCACAAAACCTAA 972
Query 897 TCAACCAAGTCAAGACTCCACTTTTTATTCTAAATGCTGCATATGATTCATGGCAGATCC 956
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 973 TCAACCAAGTCAAGACTCCACTTTTTATTCTTAATGCTGCATATGATTCTTGGCAGATTC 1032
Query 957 AAGAGAGTTTAGCTCCAAAATCCGCAGATCCAAGTGGAAGTTGGAATGACTGTAGACTTA 1016
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1033 AAGAGAGTTTAGCTCCAAAATCTGCAGATCCAAGTGGAAGTTGGAATGATTGTAGACTTA 1092
Query 1017 ACTACGCCAAGTGCACTGCATCTCAGATCCAATTCTTGCAAGGTTTTAGGACGCATATGG 1076
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1093 ACTACGCCAAGTGTAGTGCATCTCAGATCCAATTCTTGCAAGGTTTTAGGACGCGTATGG 1152
Query 1077 TGAATTTGGTAAAGGGTTTCGCGATGCCAAGTAAGAACGGTGTGTTCCTCAATTCGTGCT 1136
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TGAATTTGGTAAAAGGTTTCGCGATGCCAAGTAAGAACGGTGTGTTCCTCAATTCGTGCT 1212
Query 1137 TTGCTCATTGCCAAACAGAGAGGCATGATACATGGTTCGCCAAAAACTCTCCTGCGGTTA 1196
|||||||||||||||||||||||||||| || ||||||||| |||||||||| || |||
Sbjct 1213 TTGCTCATTGCCAAACAGAGAGGCATGACACTTGGTTCGCCCAAAACTCTCCAGCTATTA 1272
Query 1197 AGAACAAGGGTATAGCAGTAGCTGTGGGAGATTGGTATTTCGAAAGAGGAGGAGCAAAGC 1256
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 AGAACAAGGGTATTGCAGTAGCTGTGGGAGATTGGTATTTCGAAAGAGGAGGAGCAAAGC 1332
Query 1257 TCATAGACTGTGCTTATCCTTGTGACAAGACTTGTCACAATTTGGTCTTTAGATGATAAA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1333 TCATAGACTGTGCTTATCCTTGTGACAAGACTTGTCACAATTTGGTCTTTAGAAGATAAA 1392
Query 1317 -CTTAGTTTTTCTTTGGTATCAAAAtttttatttttttAAAGAAGCATCCATTTATT--- 1372
|| |||||||||||||||||| ||| | |||||||||| ||||||||||||||||
Sbjct 1393 ACT-AGTTTTTCTTTGGTATCACAATGT--ATTTTTTTAA-GAAGCATCCATTTATTTAT 1448
Query 1373 -CAGGCAACACAATGAAATAAAATAAAACCCATTTGAT 1409
|||||||||||||||||| ||||||||||||||||||
Sbjct 1449 TCAGGCAACACAATGAAATGAAATAAAACCCATTTGAT 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69427353735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5