BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474843
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57600.1 | Symbols: | MBOAT (membrane bound O-acyl transfer... 2752 0.0
> AT1G57600.1 | Symbols: | MBOAT (membrane bound O-acyl transferase)
family protein | chr1:21330512-21334727 REVERSE LENGTH=1950
Length=1950
Score = 2752 bits (1490), Expect = 0.0
Identities = 1659/1741 (95%), Gaps = 10/1741 (1%)
Strand=Plus/Plus
Query 1 AGTCGTCTTCTTCGTTTGGATCTCGTCACCGAAGCTTCACCGGCGCTTCAGTGCTTGCTT 60
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1 AGTCGTCTTCTTCGTTTGGATCTCGTCACCGGAGCTACACCGGCGCTTCAGTGCTTGCTT 60
Query 61 CTATCGTCGACTAATAGAACCAGAATACGACAAAAACAAATTGTGAGCTGCGTTTGACTC 120
|||||||||||||||||||||||||| ||| ||||| ||| || | | |||||||
Sbjct 61 CTATCGTCGACTAATAGAACCAGAATCCGATAAAAAAAAAAAAAAAG-T--G-TTGACTC 116
Query 121 AATCAGAGAGAAGTCATGAACACTCACAATAATCGATACGCAAAATGGAAACAGAGAGAG 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AATCAAAGAGAAGTCATGAACACTCACAATAATCGATACGCAAAATGGAAACAGAGAGAG 176
Query 181 CTTGTTCTTATACTCTTATACGCCATCGCTTTCTACACTTATGTCGTATGGAGATCGATT 240
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 177 CTTGTTCTTATACTCCTATACGCCATCGCTTTCTATGCTTATGTCGTATGGAGATCGCTT 236
Query 241 CGTCTCTCCCACGATCATTACTTCAAGCTCCATGGTTTAGCTCCTGGTTGGCTCATTCCT 300
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 237 CGTCTCTCCCACGATCATTACTTCAAGCTCCATGGTTTAGCTTCTGGCTGGCTCATTCCT 296
Query 301 AATCGACGCAATGATGTTTCTGATGCTCAATGGAGGAATTTTCGTGGAAATTTGCCGATT 360
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 297 AATCGACGTAATGATGTTTCTGATGCTCAATGGAGGAACTTTCGTGGAAATTTGCCAATT 356
Query 361 CTTAGCTTTGTTTTCGCAGTTTTCACTGTGATTGCAAATGGGTTTAGGTCTTTTTTCCAC 420
||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 357 CTTAGCTTTGTTTTCGCTGTTTTCACTGTGATTGCAAATGGGGTTAGGTCGTTTTTCCA- 415
Query 421 TTGAA-AGCTAAAGGAATGGCTATCTTGTGGCTTTCGATGTCGTTTATATACTTGATTTA 479
|| || |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 416 TTTAAGAGCTAAAGGAATGGCTATCTTGTGGCTTTCAATGTCGTTAATATACTTGATATA 475
Query 480 CTTACATGGAGCTTGCGTCATTTACATTCTCTCGATTGCAACAGCCAACTTCCTTCTTGT 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 476 CTTACATGGAGCTTGCGTCATTTACATTCTCTCGATTGCAACAGCCAATTTCCTTCTTGT 535
Query 540 TAAGGTTTTTGCACGGACCAAATACTTTCCTTTCATGCTTTGGACGTTCAACATATTTTT 599
|||||||||||||||||| | |||||||||| |||||| ||||| ||||||||||||||
Sbjct 536 TAAGGTTTTTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTT 595
Query 600 TCTCTTCTGCAATCGCATTTATGAAGGATATTCGTTCTCCATTTTCGGGCAACAGTTTGA 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 TCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGGCAACAGTTTGA 655
Query 660 ATTCCTGGACAACTTTCGGGGCACTTTTAGATGGCATATATGCTTCAACTTTGTTGTTCT 719
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 656 ATTCCTGGATAACTTTCGGGGCACATTTAGATGGCATATATGCTTCAACTTTGTTGTTTT 715
Query 720 GCGCATGATAAGTTTTGGATACGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCA 779
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 716 GCGCATGTTAAGTTTTGGATATGATTATCACTGGAGCCAACTGGATTCTCATTTTGATCA 775
Query 780 GGAGAAACACGTAACACGCTGTTCCTTATGTAAATTGGGGAAGACTTGCTACGTAGTGCG 839
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 GGAGAAACACGTAATGCGCTGTTCCTTATGTAAGTTGGGGAAGACTTGCTACGTAGTGCG 835
Query 840 ACAGGAGAGAGGTCTAGCAAGTGATAGCTGCAGtttttttCTATACCTTTGTTATTTGGT 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 836 ACAGGAGAGAGGTCTAGCAAGTGATAGCTGCAGTTTTTCTCTATACCTTTGTTATTTGGT 895
Query 900 GTATGCACCCTTGTACCTTGCGGGGCCAATCATAAGCTTTAATGCATTTGCTTCTCAGCT 959
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 896 ATATGCACCCTTGTACCTTGCGGGGCCAATTATAAGCTTTAATGCATTTGCTTCTCAGCT 955
Query 960 AGATATGCCACAGAATTCTCATTCATTTAAAGATGTTGCTTGGTATGGAGTGCGCTGGTT 1019
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 956 AGATATGCCACAGAATACTCTTTCATTCAAAGATGTTGCTTGGTATGGAGTGCGTTGGTT 1015
Query 1020 ATTCAGCTTCTTGCTGATTGAACTTATGACACACTTATTTTATTACAATGCCTTTGTGAT 1079
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1016 ATTCAGCTTCTTGCTGATTGAACTCATGACACACTTATTTTATTACAATGCCTTCGTGAT 1075
Query 1080 CAGTGGTCTGTGGAGAGAACTATCTCCTGTGGAGATATTTATTGTTGGATATGGGGTGCT 1139
||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || ||
Sbjct 1076 CAGTGGTCTGTGGAGAGAACTATCTCCTGTGGAAATATTTATTGTCGGATACGGAGTACT 1135
Query 1140 AAACTTCATGTGGCTTAAGTTCCTTCTTTTATGGAGATATTTCCGCTTTTGGTCTCTGGT 1199
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AAACTTTATGTGGCTTAAGTTCCTTCTTTTATGGAGATATTTCCGCTTTTGGTCTCTGGT 1195
Query 1200 GAATGGCATTGAAACTGTTGAGAACATGCCGAATTGCATTAACAATTGCTATAGCCTGGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1196 GAATGGCATTGAAACTGTTGAGAACATGCCGAATTGCATTAACAATTGCTACAGCCTAGA 1255
Query 1260 A-TCATTCTGGAAAACCTGGCATGCCTCATTTAATAGGTGGCTCATCAGGTATATGTATA 1318
| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1256 ACT-ATTCTGGAAAACCTGGCATGCCTCATTTAATAGGTGGCTTATCAGGTATATGTATA 1314
Query 1319 TTCCTCTAGGTGGATCACGAAGAAAGTTTCTGAATGTGTGGGTTGTATTTACATTTGTTG 1378
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1315 TTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTG 1374
Query 1379 CCATGTGGCATGATTTGGAATGGAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 CCATGTGGCATGATTTGGAATGGAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCT 1434
Query 1439 TCATGCCAGAGATGTTACTGAAATCAGCATCCAATGCATATAAGGTTGAAAGTGCTTTTG 1498
|||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1435 TCATGCCAGAAATGTTACTGAAATCAGCATCCAGTGCATATAAGGTTGAGAGTGCTTTTG 1494
Query 1499 GAGAATTTATCCTTCGTGAACTCAAGGCGTTGTCTGGTGCCGTCACAATCACATGCCTCA 1558
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 GAGAATTCCTCCTTCGTGAACTCAAGGCGTTGTCTGGTGCCGTCACAATCACATGCCTCA 1554
Query 1559 TGATTGCAAATCTTGCTGGCTATGTCATTGGACCATCAGGTATAAACTGGATGGTCTCCA 1618
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1555 TGATTGCAAATCTTGCTGGCTATGTCATTGGACCATCTGGTATAAACTGGATGGTCTCCA 1614
Query 1619 GCTTTCTTAAAAGAGAAGGAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGG 1678
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 GCTTTCTCAAAAGAGAAGGAGTACCTGTTCTGGGCGGCGTGTTCTTTAGCTTGTACGTGG 1674
Query 1679 GTACAAAGCTGATGTTCCACATCCAAGACTTGAGAAGTCG-GGTTCATAGCCCGAAGTAG 1737
||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||
Sbjct 1675 GTACAAAGCTGATGTTCCACATCCAAGACTTAAGAAGT-GTGGCGCATAGCCCGAAGTAG 1733
Query 1738 C 1738
|
Sbjct 1734 C 1734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85943333040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5