BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474895
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64520.1 | Symbols: RPN12a | regulatory particle non-ATPase ... 1740 0.0
> AT1G64520.1 | Symbols: RPN12a | regulatory particle non-ATPase
12A | chr1:23956386-23958322 FORWARD LENGTH=1079
Length=1079
Score = 1740 bits (942), Expect = 0.0
Identities = 1038/1084 (96%), Gaps = 8/1084 (1%)
Strand=Plus/Plus
Query 1 AAGCCAGTTCTCGGAGCAATCAAATCTATAAGAAAGGAATCGTCGCCGGTGAAGAGAAAG 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AAGCCAGTTCTCGGAGCAATCAAATCTATAAGAAAAGAATCGTCGCCGGTGAAGAGAAA- 59
Query 61 AGAGAGC-T-CAAGCGATGGATCCGCAGCTAACGGAAGTTTCACAGCAGTTCGAGAGGTT 118
| | | | | |||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 60 A-A-ACCATAGAAGCGATGGATCCGCAGCTAACTGAAGTTTCACAGCAGTTCGAGAGATT 117
Query 119 CAAGGCGGCGTTTGCGAGGAAGGATTACAATAGCTGTAGTGATCTGTTGTCTCAGCTTAA 178
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 118 CAAGGCGGCGTTTGCGAGGAAGGATTACAATACCTGTAGCGATCTGTTGTCTCAGCTTAA 177
Query 179 GGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTAATGCAGC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTAATGCAGC 237
Query 239 CAAGGAATTGACTATTGCTAGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTAAAAAC 298
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 CAAGGAATTGACTATTGCAAGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAAC 297
Query 299 CGAGGATCAAGATGCTTTTGAGAGAGATTTCTTCCAGTTGAAACCTTACTATGTGGATGC 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 298 CGAGGATCAAGATGCTTTTGAGAGAGATTTCTTCCAGCTGAAACCTTACTATGTGGATGC 357
Query 359 CAGGAACCGTATTCCCTCA-TCCCCACAGGAGAATCTTATCCTGGGTCTCAACCTTCTGA 417
||||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 358 CAGGAACCGTATT-CCTCAGTCTCCACAGGAGAATCTTATCCTGGGTCTTAACCTTCTGA 416
Query 418 GGCTGCTTGTACAAAATAGAATTGCTGAATTCCACACCGAGCTTGAATTACTTTCGTCAG 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 417 GGCTGCTGGTACAAAATAGAATTGCTGAATTCCACACCGAGCTTGAATTACTTTCATCAG 476
Query 478 CTACACTGGAGGATCCTTGCATCAAGCATGCAGTAGAGCTTGAGCAGTCCTTCATGGAGG 537
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 477 CTACACTAGAGGATCCTTGCATCAAGCATGCAGTAGAGCTTGAGCAATCCTTCATGGAGG 536
Query 538 GTGCCTATAATCGTGTGTTGAGTGCTAGACAGACTGCGCCTGATGCAACTTATGTCTATT 597
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 537 GTGCCTATAACCGTGTGTTGAGTGCTAGACAGACCGCGCCTGATGCAACTTACGTCTATT 596
Query 598 TCATGGATCTCTTGGCAAAGACCATAAGAGATGAAATAGCTGGATGCAGCGAGAAAGCTT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCATGGATCTCTTGGCAAAGACCATAAGAGATGAAATAGCTGGATGCAGCGAGAAAGCTT 656
Query 658 ATGATTATGTCTCTATCAGCGATGCCCGGCAGATGTTGTTGTTCTCTTCTGATCAAGAAC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATGATTATGTCTCTATCAGCGATGCCCGGCAGATGTTGTTGTTCTCTTCTGATCAAGAAC 716
Query 718 TCTTAACCTATGTCAAAGAGGAGCACCCTGAGTGGGAAGTGAAGGAAGGGTTTGTTGTCT 777
||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 717 TCTTAACCTATGTCACAGATGAGCATCCTGAGTGGGAAGTGAAGGAAGGGTTTGTTGTCT 776
Query 778 TCCAGAAAGCCAAAGAAACTGCACCGTGCAAAGAGATTCCGTCTCTGCAACTCATCAACC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCCAGAAAGCCAAAGAAACTGCACCGTGCAAAGAGATTCCGTCTCTGCAACTCATCAACC 836
Query 838 AGACTCTAAGCTACGCCAGAGAGCTGGAGCGTATCGTGTAAGATCCGACTTTCCTCACTG 897
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 837 AGACTCTAAGCTACGCCAGAGAGCTGGAGCGTATCGTGTAAGATTCGACTTTTCTCACTG 896
Query 898 CTTTTCTCTTCTCTTCCAATTATGTTCCTGGAAATCTCCGGGTCCTAAAACGTTGTTATA 957
||| |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||
Sbjct 897 CTTGTCTCTTCTCTTCTG-TTATGTTCCTGGAAATCTCTGGGTCAGAAAACTTTGTTATC 955
Query 958 ATGTAATGACTGATATTGAGGGACTCAGTATTTTCTCCGGGTCAATTAGACTTTGTTGCG 1017
|||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 956 ATGTAATGACCGATATTGAGCGACTCAGTATTTTCTCCGGGTCAATGAGACTTTGTTGTG 1015
Query 1018 ATATCAATCTGTTCTTCCATATCATTTTACGTTATATTCTATTGTTTAGTGTTCACTCGT 1077
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATATCAATCTGTTTTTCCATATCCTTTTACGTTATATTCTATTGTTTAGTGTTCACTCGT 1075
Query 1078 TTTC 1081
||||
Sbjct 1076 TTTC 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5