BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474896 Length=777 Score E Sequences producing significant alignments: (Bits) Value AT1G64510.1 | Symbols: | Translation elongation factor EF1B/r... 1085 0.0 > AT1G64510.1 | Symbols: | Translation elongation factor EF1B/ribosomal protein S6 family protein | chr1:23954803-23956255 REVERSE LENGTH=864 Length=864 Score = 1085 bits (587), Expect = 0.0 Identities = 707/760 (93%), Gaps = 27/760 (4%) Strand=Plus/Plus Query 7 TGGCGTCTTCGCTATGTCTATCGAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGC 66 ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 52 TGGCGTCTTCGCTGTGTGTATCAAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGC 111 Query 67 AGCCGCTGCTCTCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTGTTT 126 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 112 AGCCGCTGCTATCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTATGT 171 Query 127 GTGCCTCGCTACAACAACAGCAGAAGAGAGATGGCTCTCAATTTGTGGTAAAATCTCAGG 186 |||||||| | | ||||||||||||||||||||||||||||| |||||||||| Sbjct 172 GTGCCTCG--------ATA-CAGAAGAGAGATGGCTCTCAATTTGTGGTGAAATCTCAGG 222 Query 187 CTCTTGATTTCTCCGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTT 246 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 CTCTTGACTTCTCTGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTT 282 Query 247 CTCCTCCCGGGTCGGGAGTCTCAACTGCCCTTGAGGACAAACCGGAACCTCAGTGCCCAC 306 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 283 CTCCTTCCGGGTCGGGAGTCTCAACTGCCCTTGAAGACAAACCGGAACCTCAGTGCCCAC 342 Query 307 CTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAAC 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 CTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAAC 402 Query 367 GGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGG 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 GGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGG 462 Query 427 AAGTGTTCAACAGAGGAGTGATTCCATTAGCTTACAGCATTAGAAAGAAGAACAAAGCTG 486 ||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||| Sbjct 463 AAGTGTTTAACAGAGGAGTGATTCCGTTGGCTTACAGCATAAGAAAGAAGAACAAAGCTG 522 Query 487 GAGAAACCAACACTTACCTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCG 546 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 523 GAGAAACCAACACTTACTTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCG 582 Query 547 AGTCAATAACTCCGCTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTT 606 | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 AATCAATAGTTCCACTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTT 642 Query 607 CCTTCAAGATAAAGAAGAGGAAGTACAACTGAAGAGACCATGAACATTGTGTATGTG--- 663 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 643 CCTTCAAGATAAAGAAGAGGAAGTACAACTGAAGA--CCATGAACATTGTGTATGTGAGA 700 Query 664 ----TG--A-ATT-TTTTG--GTTTCTTTGGAAGAACAAAAGTAAATCTATCTTTATTTG 713 || | ||| |||| ||||||||| |||||||||||||||||||||||| |||| Sbjct 701 AAAATGTCAGATTCTTTTTTTGTTTCTTTGTAAGAACAAAAGTAAATCTATCTTT-TTTG 759 Query 714 GATCtttttttATGCATTGCTCTGTTTTCT-ACTGTAACT 752 |||||||||| |||||||||||| ||||| | ||||||| Sbjct 760 TATCTTTTTTTGTGCATTGCTCTGCTTTCTTA-TGTAACT 798 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37776078544 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5