BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474897
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64500.1 | Symbols: | Glutaredoxin family protein | chr1:23... 1930 0.0
> AT1G64500.1 | Symbols: | Glutaredoxin family protein | chr1:23953233-23954492
FORWARD LENGTH=1260
Length=1260
Score = 1930 bits (1045), Expect = 0.0
Identities = 1202/1274 (94%), Gaps = 25/1274 (2%)
Strand=Plus/Plus
Query 1 ACAAAGAAAACTGAACAAAATTTGAAGA---ATTAAAATGGGGTGTACATCGTCCAAGCA 57
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1 ACAAAGAAAACTGAACAAAATTTGAAGAGTTATTAAAATGGGGTGTACATCTTCCAAGCA 60
Query 58 AGTGAAAGCTAACGTCGTCGCCGATGTTTACAAACCACCGCCGTCAAGTTTCGCCGTGTT 117
|| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 61 AGCAAAAGCTAACGTCGTCGCCGACGTTTACAAACCACCGCCGTCTAGTTTCGCGGTGTT 120
Query 118 TGATGTCAACGCCATCCAAGAGCCATGGCTAAAATTTGAACATGAAGATGATGAGAAACC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATGTCAACGCCATCCAAGAGCCATGGCTAAAATTTGAACATGAAGATGATGAGAAACC 180
Query 178 GCCACGCTCCACCGTCTTCGACAC-TCTCGAGGAGgatgatgatgatgatgatgatgatg 236
|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 181 GCCACGCTCCACCGTCTTCGAC-CGTCTCGACGAGGATGATGATGATGATGATGATGATG 239
Query 237 ---a---CGCTCCGAAAACATGGGATGAAGTCAGCAAATCTCTAGAAACTAAACTTAAAC 290
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 GTGATGACGCTCCTAAAACATGGGAAGAAGTCAGCAAATCTCTAGAAACTAAACTTAAAC 299
Query 291 CCGCCGCCGATAAACCGCCGGAAGTTGTCTCCGTTAAACCTCCGGCGACTCCTCCACGAC 350
| ||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||| |
Sbjct 300 CTGCCGCCGTTAAACCGCCGGAAGTAGACTCTGTTAAACCTCCGGCGACTCCTCCACGGC 359
Query 351 GGCTTCCGCGGAAGAGCGCATCGTTCCACACACTGGACGAGCTTGAAACCAGGGCCAAAA 410
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 GGCTTCCGCGGAAGAGCGCATCGTTCCACACACTGGACGAGCTTGAAGTGAGGGCCAAAA 419
Query 411 GACAA-ATCGCCGCGCAAATCCCGACGACGGTGGTTAAGCTTAAGAGAACCGAGTCGATG 469
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GA-AGCATCGCCGCGCAAATCCCGACGACAATGGTTAAGCTTAAGAGAACCGAGTCGATG 478
Query 470 TCCGAGCTAAGACCCGAGTCAGATGATCGGACCGAGTCCACTCAGTCGTCCTACTCAGGG 529
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 479 TCCAAGCTAAGACCCGAGTCAGATGATCGAACCGAGTCCACTCAGTCGTCCTACTCGGGG 538
Query 530 CCTCGGTCAGTGAAGGAGAACATATTCGTCAAGAGAGACAGAGAACGGAGGGAGAAAGAA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCTCGGTCAGTGAAGGAGAACATATTCGTCAAGAGAGACAGAGAACGGAGGGAGAAAGAA 598
Query 590 GGGAACAAGAAACCGGTGATGAACTGGGACCCACTTAGGGAGTTCCCGGAGAAGTGTCCT 649
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGGAACAAGAAGCCGGTGATGAACTGGGACCCACTTAGGGAGTTCCCGGAGAAGTGTCCG 658
Query 650 CCGCGAGGAGGGGAAGGTTTGGTTGTCTACACGACGTCGTTGCAAGGAGTGCGTCGCACG 709
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 CCGGGAGGAGGGGAAGGTTTGATTGTCTACACGACGTCGTTGCAAGGAGTGCGTCGCACG 718
Query 710 TACGAGGATTGCATGCGTGTGAGGGCCATCATGGAGCAGCAAGGAGTGGTGGTGGACGAG 769
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 719 TACGAGGATTGTATGCGTGTGAGGGCCATCATGGAGCAGCAAGGAGTTGTGGTGGACGAG 778
Query 770 AGGGACGTGTCTTTAGACGCCGGAGTCTTGAGCGAGCTTAAGGAGCTTCTCCAAGACGAA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGGGACGTGTCTTTAGACGCCGGAGTCTTGAGCGAGCTTAAGGAGCTTCTCCAAGACGAA 838
Query 830 GCATCGGTGGCTCCGCCGAGAGTGTTTGTGAAAGGGAGGTACTTGGGAGGAGCGGCGGAA 889
||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 839 GCATCAGTGGCGCCGCCGCGAGTGTTTGTGAAAGGGAGGTACTTGGGAGGAGCAGCGGAA 898
Query 890 GTGACAGCGATGAATGAGAACGGGAAGTTAGGGAGGGTGTTGAGGTGGGCACGTGTGGAG 949
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 GTGACAGCGATGAATGAGAACGGGAAGTTAGGGAGGGTGTTGCGGTGGGCACGTGTGGAG 958
Query 950 AGAGTAGGGGAGGAAGGGAGGCTCACGTGTGAAGGGTGCGGAGGAGCGAGGTGGTTGCCT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGAGTAGGGGAGGAAGGGAGGCTCACGTGTGAAGGGTGCGGAGGAGCGAGGTGGTTGCCT 1018
Query 1010 TGTTTTGAATGCGGCGGAAGCTGTAAGGTGGCTGCGGTTGGGGCGGCTAAAGGTGAAAGG 1069
||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1019 TGTTTCGAGTGCGGCGGAAGCTGTAAGGTGGCGGCGGTTGGGGCGGCCAAAGGTGAAAGG 1078
Query 1070 TGGGAGAGGTGTGTCAAGTGTAATGAGAATGGATTGATTCGTTGTCCCGTTTGTTTTGTT 1129
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1079 TGGGAGAGGTGTGTCAAGTGTAATGAGAATGGATTGATTCGTTGTCCCGTGTGTTTTGTT 1138
Query 1130 AATTAAGAACATGAATATAGTTTACACAAGCAAATAGAGGTGTGTCAAATATACGTTGTC 1189
|||||||||||| | | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1139 AATTAAGAACATTA-T-TAGTTTACACAAGCAAATAGAGGTGTGTCAAATATACTTTGTC 1196
Query 1190 TTGTTTGTTCTGTTATATGTATGCGACAGGTTTGATTATTTCTTAATGTGGCAAATTGAA 1249
||||||| ||||||||||||| |||| |||||||| || |||| || |||||
Sbjct 1197 CCGTTTGTTTTGTTATATGTATGTGACACGTTTGATT-TT-------GTGG-AA-TTGAA 1246
Query 1250 AATGATTTGAAACT 1263
||||||||||||||
Sbjct 1247 AATGATTTGAAACT 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5