BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474898

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64490.1 | Symbols:  | DEK, chromatin associated protein | c...  63.9    1e-09


> AT1G64490.1 | Symbols:  | DEK, chromatin associated protein | 
chr1:23952133-23952713 FORWARD LENGTH=581
Length=581

 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  407  ATGTCATTAGTTGAAATTAGTGTTTTAGCCATTGATA  443
            ||||| |||||||||||||||||||||||||||||||
Sbjct  476  ATGTCTTTAGTTGAAATTAGTGTTTTAGCCATTGATA  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5