BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474911
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64385.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1670 0.0
> AT1G64385.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 66 Blast hits to 66
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa
- 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes -
5 (source: NCBI BLink). | chr1:23900035-23902281 FORWARD LENGTH=1565
Length=1565
Score = 1670 bits (904), Expect = 0.0
Identities = 1238/1385 (89%), Gaps = 80/1385 (6%)
Strand=Plus/Plus
Query 103 ATTTTGAGTTAGTTTAAGTGTCGTCAAACATGGAGCTGAATCTCGTTTTGCTTCTGTGTA 162
||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct 156 ATTTTGAGTTACTTTAAGCGTCGTCAAAAATGGAGGTGAATCTCGTTTTGCTTCTGTGTA 215
Query 163 TAGCTTTGATTTTCGTCGCTGATACTAAGGTTGATTTCACTATTGAG-ATTAGCT-CCAT 220
|||||||||| ||||||||||||||||||||||| | | | | | | || | |
Sbjct 216 TAGCTTTGATCTTCGTCGCTGATACTAAGGTTGA-TGGA-GA--G-GCACAAGTTGTTGT 270
Query 221 CACGAATTCGAATTTGACGGATACAAGATTTGGTGGTGGTTCTGAAAATGTTACTGA--- 277
| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 271 CTCGAATTCGAATTTGACAGATACAAGATTTGGTGGTGGCTCTGAAAATGTTACTGATTC 330
Query 278 TTCTTCGAAGAG--T-ATTACTATAGATCATTCCAAAAACTCGACTAATGATGATGATAC 334
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TTCTTCTAAGAGTATAATTACTATAGATCATTCCAAAAACTCGACTAATGATGATGATAC 390
Query 335 ACAGTTGGGTGATGGATCTAAGCTGATTGGTAGTGATAGTAGTAAGAGT-------GG-T 386
|||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 391 ACAGTTGGGTGATGGATCTAAGATGATTGGTAGTGATAGTAGTAAGAGTGACCAAGGGAA 450
Query 387 GA-A---AGTGA--AAACAG-TAA-G--GAGGAGGAAGCTGTGAG---TAATTCTTCAAG 433
|| | ||||| | | | ||| | |||||||| |||||||| |||||||||||
Sbjct 451 GATAGCTAGTGATGAGAGTGATAAGGAAGAGGAGGAGGCTGTGAGCAAGAATTCTTCAAG 510
Query 434 GAAGAAAGAAGGCTTTCATGGTGAAGAATGTGATCCATCTAATATGTGTACT-GATGATG 492
||||||| |||| ||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 511 GAAGAAACAAGGGTTTCATGGTGAGGAATGTGATCCATCTAATATGTGTA-TAGATGATG 569
Query 493 AACATGAGTTTGCCGCTTGTCTGCGAGTTCCCGGTAACGATGCGCCTCATCTCTCACTTT 552
||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 570 AACATGAGTTTTCCGCTTGTCTGCGAGTTCCGGGTAACGATGCTCCTCATCTCTCACTTT 629
Query 553 TGATTCAGAACAAAGGCAAAAGGGCTTTGATTGTTACTATAACTGCTCCGGGTTTCGTCC 612
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |
Sbjct 630 TGATTCAGAACAAAGGCAAAAGGGCTTTGATTGTTACGATAACTGCTCCGGTTTTTGTTC 689
Query 613 GGTTAGACAAGGATAAAGTCCAGCTTCTGCAAAACGAAGACACT-AAGGTGAAAGTTTCT 671
||||||| || ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 690 GGTTAGAGAAAGATAAAGTCCAGCTTCTGCAAAACGAAGACA-TAAAGGTGAAAGTTTCT 748
Query 672 ATTAAGAAGGGAGGGTCCAACGATAGCGCAATCGTACTAGCTTCCAGTAAAGGACGTTGC 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 ATTAAGAAGGGAGGGTCCAACGATAGCGCAATCGTACTAGCTTCCAGTAAAGGACGTTGC 808
Query 732 AGCCTTGAATTAAAGGATTT-G--GCAGCAGCTCATGAATCAGAAAGCGACGATACAGTT 788
|| ||||||||||||||||| | |||||||| |||||| |||||||||| |||||||||
Sbjct 809 AGGCTTGAATTAAAGGATTTGGCAGCAGCAGCACATGAAACAGAAAGCGATGATACAGTT 868
Query 789 TCTGTTTCTCGTCCTTC-AGTTCTCAATATCAGTTCACGAACAGTCATCGTCATCATCAT 847
||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||
Sbjct 869 TCTGTTTCTCGTCCTTCTA-TTCTCAATATCAGTTCGCGAACACTCATCGTCATCATCAT 927
Query 848 GATCTCCTTCCTCGTTCTCTCCCTTGTCATCATCCCAGTGATCATTCATGTTTACAAGAA 907
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 928 GATCTCCTTCCTCGTACTCTCCCTTGTCATCATCCCGGTGATCATTCATGTTTACAAGAA 987
Query 908 CAAGTCACGGGGAAACAACAAATACCAGAGGCTAGATATGGAATTGCCAGTCTCTAACCC 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 CAAGTCACGGGGAAACAACAAATACCAGAGGCTAGATATGGAATTGCCAGTCTCTAACCC 1047
Query 968 CGCATTGGTGACAAAATCAGATCAAGAAAGTGGTGATGACGGATGGAACAATAACTGGGG 1027
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1048 CGCATTGGTGACAAAATCTGACCAAGAAAGTGGTGATGATGGATGGAACAATAACTGGGG 1107
Query 1028 AGATGATTGGGACGATGAAAATGGTGGTGGAGATGAAGAACAGCCGAATACTCCGGTGTT 1087
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1108 AGATGATTGGGACGATGAAAATGGTGGTGGAGACGAAGAACAGCCGAATACTCCGGTGTT 1167
Query 1088 ACCACTCACACCGAGCCTCTCCTCTAGAGGGCTTGCTCCTAGAAGACTCAGTAAAGAAGG 1147
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1168 ACCACTCACACCGAGCCTCTCCTCTAGAGGGCTTGCTCCGAGAAGACTCAGTAAAGAAGG 1227
Query 1148 TTGGAAAGATTAGTTTAACTCTGCTTTCTCTTTGGTAATG-----G-A-AA-GT-A-G-- 1195
||||||||||||||| ||||||||||||||||||||||| | | || | | |
Sbjct 1228 CTGGAAAGATTAGTTTCACTCTGCTTTCTCTTTGGTAATGCAATAGGAGAAAGACAAGGC 1287
Query 1196 ---------T-G--AAGAGGAGGCAAAATCAATCTCCCACTCATCGTAACATAGACTTTG 1243
| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1288 AGAGGAAAGTAGTGAAGAGGAGGCAAAATCAATATCCCACTCATCGTAACATAGACTTTG 1347
Query 1244 TTTTGACGTTGTATGAAATATTC-GCAACAGCTGGCTCTAtttttttGTTT-T------- 1294
||| ||| ||| |||||||||| ||||||| | ||||||||||||| ||| |
Sbjct 1348 TTTAGACTTTGAATGAAATATTTTGCAACAGGTCGCTCTATTTTTTTTTTTATTTTTTTT 1407
Query 1295 ----GAAATCACGAGGTAATTCTAGTAGTTGTTATGAGATATCTGTTAGTTAATTCTCAA 1350
|||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 1408 TTTTGAAATCACGAGGTAATCCTATTAGTGGTTATGAGATATCTGTTAGTTAATTCTCAA 1467
Query 1351 TACTTTCTTCCTCAAATCAAATATTCATTAAAACTCTGTAATTGATTGCTGAAAATGTAA 1410
||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||
Sbjct 1468 TACTTTCTTCCTCAAATCAAATATTTATTGAAACTCTGAAATTGATTGCTGAAAATGTAA 1527
Query 1411 CCTTG 1415
|||||
Sbjct 1528 CCTTG 1532
Score = 65.8 bits (35), Expect = 1e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1 AGTGGTGAGTGGTGACTCACACAAGTCTCGAGCCAATC 38
||||||| ||||||||||||||||||||||||||||||
Sbjct 26 AGTGGTGCGTGGTGACTCACACAAGTCTCGAGCCAATC 63
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5