BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474913
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64370.1 | Symbols: | unknown protein; Has 773 Blast hits t... 900 0.0
> AT1G64370.1 | Symbols: | unknown protein; Has 773 Blast hits
to 375 proteins in 118 species: Archae - 0; Bacteria - 97;
Metazoa - 421; Fungi - 108; Plants - 31; Viruses - 0; Other
Eukaryotes - 116 (source: NCBI BLink). | chr1:23888920-23889661
FORWARD LENGTH=742
Length=742
Score = 900 bits (487), Expect = 0.0
Identities = 670/750 (89%), Gaps = 45/750 (6%)
Strand=Plus/Plus
Query 1 ACACACAACATAAATACAAACCATAAAACTCACATCTTCTTTTA-AAC-ATGCAGTACTA 58
||| |||||| ||||||||||||||||| |||||||||| |||| ||| |||||||||||
Sbjct 1 ACAAACAACACAAATACAAACCATAAAA-TCACATCTTC-TTTACAACAATGCAGTACTA 58
Query 59 CGAAAACCGTGAGAAAGACTACTACGAGGTGGCACAAGGCCAACGCAATGGTTATGGCCA 118
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 59 CGAAAACCGTGAGAAAGACTACTACGAGGTGGCTCAAGGCCAACGCAATGGTTATGGCCA 118
Query 119 GAGCCAG-G-----GCCACGAGGGATATGGTCAGAGCCAGAGCCGTGGGGGATATGGCCA 172
||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 GAGCCAGAGCCACAACCACGAGGGATATGGCCAGAGCCAGAGCCGTGGGGGATATGGCCA 178
Query 173 G----AT--CC---A--G----------AACCGTGAGGGATATAGCCAGAGCCAGAGTCG 211
| || || | | |||||||||||||||||||| |||||||||||
Sbjct 179 GATCCATAACCGTGAGGGTTATAACCAAAACCGTGAGGGATATAGCCAAAGCCAGAGTCG 238
Query 212 CCCAGTATATGGGCAAAGCCCGACTTTGAACAACCGTAGCCACGGTGGGTTTCTTGATGG 271
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 CCCAGTATATGGGCTTAGCCCGACTTTGAACCACCGTAGCCACGGTGGGTTTCTTGATGG 298
Query 272 GCTCTTCAAGGGTCAAAATGGCCAAAAGGGTCAGAGTGGCCTAGGCACGTTTCTAGGGCA 331
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 GCTCTTCAAGGGTCAAAATGGCCAAAAGGGTCAGAGTGGGCTAGGCACGTTTCTAGGGCA 358
Query 332 ACGCAAGAGCCAAGAGGATAATAAGGGTCAAGGACATGGGAAACTCATAGGGC-AGA--A 388
|| |||||||||||||| ||| ||| |||||||||||||||| ||| | |||| | | |
Sbjct 359 ACACAAGAGCCAAGAGGCTAAAAAGAGTCAAGGACATGGGAAGCTCTTGGGGCAACATGA 418
Query 389 CCAGAAGACAACTTATGAGACAAACAAAGGTCTTAATGGCCTTGGAATGTTCATTAACAA 448
|||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 CCAGAAGAAAACTCATGAGACAAACAGTGGTCTTAATGGCCTTGGAATGTTCATTAACAA 478
Query 449 TGGTGAGAAGAAAAATAGGAGGCAAAGTGAGCACAAGAAGAAGAACAAGGATGGGCATGG 508
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 TGGTGAGAAGAAACATAGGAGGAAAAGTGAGCACAAGAAGAAGAACAAGGATGGGCATGG 538
Query 509 CAGTGGCAATGAGAGTGGAAGCAACAGCGGTAGCGACAGCGACTGAATCTGATATGTTTG 568
|||||| |||||||||||||||| |||||||||||||||||||||||| | ||||| |||
Sbjct 539 CAGTGGTAATGAGAGTGGAAGCAGCAGCGGTAGCGACAGCGACTGAATATCATATGCTTG 598
Query 569 CTCTaaaaaaaGTAACGCTTCTAAGAGAGAGACTATACAAATTAAGTACTTGGATGTAAT 628
|||| || ||||||||||||||||||| || ||| | | |||||||||||||||||||
Sbjct 599 CTCTGAAGAAAGTAACGCTTCTAAGAGTGA--CTA-A-A--TTAAGTACTTGGATGTAAT 652
Query 629 ACTTAAAAATAAAATCACTTAGGTGGTTGTGTCTCTGTGTGTCCTATATAACCTTGCTAC 688
|||||||| ||||||||||||||||||||| | | ||||||||||||||||||| |||||
Sbjct 653 ACTTAAAA-TAAAATCACTTAGGTGGTTGTCT-T-TGTGTGTCCTATATAACCTCGCTAC 709
Query 689 TA--TGAATCTACTTTTATATTTTTGTTGC 716
|| |||||||||||||||| |||||||||
Sbjct 710 TACATGAATCTACTTTTATAGTTTTGTTGC 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34711795577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5