BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474946
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64090.2 | Symbols: RTNLB3 | Reticulan like protein B3 | chr... 1112 0.0
> AT1G64090.2 | Symbols: RTNLB3 | Reticulan like protein B3 | chr1:23789062-23790976
FORWARD LENGTH=1456
Length=1456
Score = 1112 bits (602), Expect = 0.0
Identities = 695/739 (94%), Gaps = 9/739 (1%)
Strand=Plus/Plus
Query 280 CTGCCGACATTTTCCTGTGGAGGAACAAGAAGGTATCAGGAGGAGTGTTGGGTGCTGCGA 339
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 572 CTGCCGACATTTTCCTGTGGAGGAACAAGAAGGTATCAGGAGGAGTATTGGGTGCTGCAA 631
Query 340 CTGTTTCCTGGATCTTATTTGAGTTACTTGAATACAATCTCCTTACTCTTTTTGGCCACA 399
||||||||||||||||||| ||||||||||| |||||||| || || || || |||||||
Sbjct 632 CTGTTTCCTGGATCTTATTCGAGTTACTTGAGTACAATCTTCTCACACTCTTCGGCCACA 691
Query 400 TTTCAATTCTTGTTCTTGCGGTTTTGTTCTTGTGGTCTAGTGCTACTACCTTCATTCACA 459
|||||||||||| ||| || || |||||||||||||||||||||| ||||||||||||||
Sbjct 692 TTTCAATTCTTGCTCTCGCAGTATTGTTCTTGTGGTCTAGTGCTAGTACCTTCATTCACA 751
Query 460 AGTCACCTCCTCATATCCCTGAAGTTCACATCCCTGAGGAAGTGGTTCTTCAGCTTGCTT 519
||||||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 752 AGTCACCTCTTCATATCCCTGAAGTTCACATCCCCGAGGATGTTGTTCTTCAGCTTGCTT 811
Query 520 CTGGATTAAGGATTGAGATCAACCGTGGTTTTACTGTTCTTAGGGACATTGCATCAGGAA 579
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 812 CTGGATTAAGGATTGAAATCAATCGTGGATTTACTGTTCTTAGGGACATTGCATCAGGAA 871
Query 580 GAGATCTCAAGAAGTTTCTTTTGGTGATTGCTGGTTTATGGGTTTTGTCCAAAGTTGGTA 639
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GAGATCTTAAGAAGTTTCTGTTGGTGATTGCTGGTTTATGGGTTTTGTCCAAAGTTGGTA 931
Query 640 GCTCCTGCAACTTCTTGACCTTAATCTACATTGCAACTGTTCTTCTCTTCACGATTCCCG 699
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 932 GCTCCTGCAACTTCTTGACCTTAATCTACATCGCAACTGTACTTCTCTTCACGATTCCCG 991
Query 700 TGCTTTACGAGAAGTACGAAGATAAAGTAGATGACTTTGGTGAAAAGGCGATGAGGGAGA 759
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 TGCTTTACGAGAAGTATGAAGATAAAGTAGATGACTTTGGTGAAAAGGCGATGAGGGAGA 1051
Query 760 TCAAGAAGCAATACGTGGAGTTTGATGTGAAGGTTTTGAGTAAGGTGATGAGCAAAATCC 819
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 1052 TCAAGAAGCAATACGTGGAGTTCGACGTGAAGGTTTTGAGTAAGGTGATGAGCAAAATTC 1111
Query 820 CTAAAGGAGCCTTT---T--A-CAAGAAGAAAGATTAGAGAGTGTGTAAGTTTCTCTCAT 873
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1112 CTAAAGGAGCCTTTGCCTTTATCAAGAAGAAAGATTAGAGAGTGTGTAAGTTTCTCTCAT 1171
Query 874 CATCATTATCATCTGAGATTCTTCCAGATTGATATATAAATCTCGAAGCATTGttttttt 933
|||||||||| | |||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1172 CATCATTATC--C-GAGATTATTCAAGATTGATATATAAATCTCGAAGCATTGTTTTTTT 1228
Query 934 GGCTGTTGGTTAATAACCCTTTATTCTCTTAAATTTCTGATATGTGGATTTTATTCGGGT 993
||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||
Sbjct 1229 GGCTGTTGGTTAATAACCCTTTATTCTCTCAAATATCTGCTATATGGATTTTATTCGGGT 1288
Query 994 TTTAACCAAATTTTATAGC 1012
|||||||||||||||||||
Sbjct 1289 TTTAACCAAATTTTATAGC 1307
Score = 412 bits (223), Expect = 2e-114
Identities = 261/279 (94%), Gaps = 3/279 (1%)
Strand=Plus/Plus
Query 1 TTTTCGTTTTCTTCTCCGTTTCTCACTCATCGCTTACTGAAACCAGAAACAAGTTTAGGG 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 248 TTTTCGTTTTCTTCTCCGTTTCTCGCTCATCGCTTACTGAAACCAGAAACAAGTTTAGGG 307
Query 61 TTTTTGCGGAGGTTTCAAAGTTAACAATGGCGGAAGAACACAAGCACGAAGAATCAATCA 120
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 308 TTTTTGCGGAGGTTTCAAAGTTAACAATGGCGGAAGAGCACAAGCACGAGGAATCGATCA 367
Query 121 TGGAGAAGATAGCTGAGAAGATCCATGGTCACGATGACGGCTCGTCTTCGTCTTCTTCCG 180
|||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 368 TGGAGAAGATCTCTGAGAAGATCCATGGTCACGATGACT-CT--TCTTCTTCTTCTTCCG 424
Query 181 ATTCAGATGACGATAAGAAATCTGCGTCTCTCAAAACGAAGATTTATCGTCTTTTCGGAA 240
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 425 ATTCGGATGACGATAAGAACTCTGCGTCTCTCAAAACCAAGATTTATCGTCTTTTCGGAA 484
Query 241 GGGAACAGCCTCTTCACAAGGTTTTTGGCGGCGGAAAAC 279
| |||||||||||||||||| |||| || ||||||||||
Sbjct 485 GAGAACAGCCTCTTCACAAGCTTTTCGGTGGCGGAAAAC 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5