BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474964
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63940.2 | Symbols: MDAR6 | monodehydroascorbate reductase 6... 2804 0.0
> AT1G63940.2 | Symbols: MDAR6 | monodehydroascorbate reductase
6 | chr1:23729979-23733892 FORWARD LENGTH=1956
Length=1956
Score = 2804 bits (1518), Expect = 0.0
Identities = 1694/1776 (95%), Gaps = 23/1776 (1%)
Strand=Plus/Plus
Query 96 CAGTTCGTAGAGTCATGGCGTTAGCATCAACCACGTTGCCGACGAAGTCCGGATTGTCTC 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 124 CAGTTCGTAGAGTCATGGCGTTAGCATCAACCACGTTGCCGACGAAGTCCGGATTATCTC 183
Query 156 TTTGGTGTCCATCTTCTCCGTCTCTCGCTCGTCGTTTTCGCGCTCGGTTTTCTCCGATCG 215
|||||||||| |||||||||||||||||||| || |||| |||||| |||||||||||||
Sbjct 184 TTTGGTGTCCGTCTTCTCCGTCTCTCGCTCGCCGATTTCCCGCTCGTTTTTCTCCGATCG 243
Query 216 GTTCTAGAATCGCTTCCAGATGCCTCGTCACTGCTTCTTTCGCTAACGAGAATCGCGAGT 275
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 244 GTTCTAGAATCGCTTCCAGAAGCCTCGTCACTGCTTCGTTCGCTAACGAGAATCGCGAGT 303
Query 276 TTGTGATTGTTGGTGGAGGAAATGCTGCTGGTTATGCTGCTAGAACTTTTGTAGAGAACG 335
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 304 TTGTGATTGTTGGTGGAGGAAATGCTGCTGGTTATGCTGCTAGAACTTTTGTGGAAAATG 363
Query 336 GAATGGCTGATGGTCGGCTTTGCATTGTGACCAAAGAGGCTTATGCACCTTATGAGAGAC 395
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 364 GAATGGCTGATGGTCGGCTATGCATTGTGACCAAAGAGGCTTACGCACCTTATGAGAGAC 423
Query 396 CGGCTTTGACAAAAGCTTACTTGTTCCCACCAGAGAAGAAGCCAGCTCGTTTACCAGGGT 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 424 CGGCTTTGACAAAAGCTTACTTGTTCCCACCAGAGAAGAAGCCAGCTCGTTTACCAGGAT 483
Query 456 TTCATACTTGTGTTGGAGGTGGTGGAGAAAGGCAGACACCAGACTGGTATAAGGAGAAAG 515
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 484 TTCATACTTGCGTTGGAGGTGGTGGAGAAAGGCAAACACCAGATTGGTATAAGGAGAAAG 543
Query 516 GAATTGAGGTAATATATGAAGATCCAGTGACTGGAGCTAATTTTGAAAAGCAAACCCTCA 575
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 544 GAATTGAGGTAATATATGAAGATCCAGTGGCTGGAGCTGATTTTGAAAAGCAAACACTCA 603
Query 576 CAACAGACACAGGGAAGCAGTTAAAATATGGATCCCTAATTATCGCTACAGGGTGTACAG 635
| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 604 CCACAGACGCAGGGAAGCAGTTAAAATATGGATCTCTAATTATCGCTACAGGGTGTACAG 663
Query 636 CCTCAAGGTTCCCAGATAAAATTGGAGGGAACTTGCCAGGGGTTCACTATATTCGGGAGG 695
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 664 CCTCAAGGTTCCCAGATAAAATCGGTGGGCACTTGCCAGGGGTTCACTATATTCGGGAGG 723
Query 696 TTGCAGATGCTGATTCACTGATAGCATCTCTGGGAAAGGCAAAGAAAGTTGTCATTGTGG 755
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 724 TTGCAGATGCTGATTCACTGATAGCATCTCTGGGAAAGGCAAAGAAAATTGTCATTGTTG 783
Query 756 GTGGTGGCTACATCGGCATGGAGGTTGCTGCGGCAGCTGTTGCGTGGAATCTAGATACAA 815
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 784 GTGGTGGCTACATCGGCATGGAGGTTGCTGCTGCAGCTGTTGCGTGGAATCTAGATACAA 843
Query 816 CGATTGTATTCCCCGAAGATCAGCTTTTGCAAAGATTGTTCACTCCATCGCTTGCTCAGA 875
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 CGATTGTATTCCCTGAAGATCAGCTTTTGCAAAGATTGTTCACTCCATCGCTTGCTCAGA 903
Query 876 AATATGAAGAACTGTACCGTCAAAATGGTGTTAAGTTTGTCAAGGGCGCTTCCATAAATA 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AATATGAAGAACTGTACCGTCAAAATGGTGTTAAGTTTGTCAAGGGCGCTTCCATAAATA 963
Query 936 ACTTAGAAGCAGGTTCAGATGGGCGTGTATCAGCTGTTAAGCTTGCTGATGGGTCTACAA 995
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ACTTGGAAGCAGGTTCGGATGGGCGTGTATCAGCTGTTAAGCTTGCTGATGGGTCTACAA 1023
Query 996 TTGAGGCAGACACGGTTGTAATCGGAATTGGAGCTAAGCCTGCTATTGGCCCCTTTGAAA 1055
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1024 TTGAGGCAGACACGGTTGTAATTGGAATTGGAGCTAAGCCTGCTATTGGCCCCTTTGAAA 1083
Query 1056 CTTTGGCCATGAACAAATCTATTGGAGGAATTCAGGTCGATGGCTTGTTCAGGACAAGTA 1115
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CTTTGGCCATGAACAAATCAATTGGAGGAATTCAGGTCGATGGCTTGTTCAGGACAAGTA 1143
Query 1116 CCCCTGGAATTTTTGCTATTGGAGATGTCGCAGCCTTCCCTTTGAAGATATATGATCGGA 1175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1144 CCCCTGGAATTTTTGCTATTGGAGATGTCGCAGCCTTCCCTTTGAAGATATATGATAGGA 1203
Query 1176 TGACTCGAGTTGAACATGTTGATCACGCCCGCCGCTCTGCACAACACTGTGTGAAATCGC 1235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1204 TGACTCGAGTTGAACATGTTGATCACGCCCGCCGCTCTGCACAACACTGTGTGAAATCAC 1263
Query 1236 TGCTCACGGCACACACTGACACGTACGATTATCTTCCTTATTTCTACTCAAGAGTATTCG 1295
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1264 TACTCACGGCACACACTGACACGTACGATTATCTTCCATATTTCTACTCAAGAGTATTCG 1323
Query 1296 AGTATGAAGGCAGCCCAAGAAAAGTTTGGTGGCAGTTTTTCGGAGATAATGTGGGAGAAA 1355
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1324 AGTATGAAGGAAGCCCAAGAAAAGTGTGGTGGCAGTTTTTCGGAGATAATGTGGGAGAAA 1383
Query 1356 CAGTTGAGGTTGGGAACTTCGACCCGAAAATCGCTACCTTCTGGATTGAATCTGGTAGGT 1415
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1384 CAGTGGAGGTTGGGAACTTTGACCCGAAAATCGCTACCTTCTGGATTGAATCTGGCAGGT 1443
Query 1416 TGAAAGGTGTTCTTGTAGAAAGTGGATCACCTGAGGAGTTCCAGCTTCTACCAAAGCTAG 1475
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1444 TGAAAGGTGTTCTAGTAGAAAGCGGATCGCCTGAGGAGTTCCAGCTTCTACCAAAGCTAG 1503
Query 1476 CAAGAAGCCAACCACTTGTCGATAAGGCTAAACTCGCAAGCGCATCTTCAGTCGAAGAAG 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CAAGAAGCCAACCACTTGTCGATAAGGCTAAACTCGCAAGCGCATCTTCAGTCGAAGAAG 1563
Query 1536 CCCTCGAAATTGCTCAAGCCGCTCTACAGAGTTAGAGAGAG-AAACTTGATGGAGttttt 1594
| ||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||
Sbjct 1564 CTCTCGAGATTGCTCAAGCCGCTCTACAGAGTTAGAGA-AGGAAACTTCATGGAGTTTTT 1622
Query 1595 ttttATAGCTTTTGGGGTTCAGAGAAATCAACATCTTTTATTCTCGGTGAGAGT-ATTCA 1653
|| |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1623 TTA-ATAGCTTTTGGG-TTCAGAGAAATCAACATCTTTTATTCCCGGTGAGAGTTATTCA 1680
Query 1654 TCTTTCCATTGGAAAAATGATCTATAGAGAGCACTGTTGTCAATAATCTCCACGAATAAT 1713
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1681 TCTTTCCATTGGAAAAATGATCTATAGAGAGCACTGTTGTCAATAATCTCCTCGAATAAT 1740
Query 1714 TTATAACCTCTTTTTAAGG-TAATCATATTTTGCTCATTAGAGAGCTTTGCTTCTAATAA 1772
||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1741 TTATAACCTCTTTTTG-GGATAATCATATTTTGCTCATTAGAGAGCTTTGTTTCTAATAA 1799
Query 1773 AATCCATG-----C--T-AGA--GAT------CGTTTTCTCATGATCTATGGGTTGTTTC 1816
|||| ||| | | ||| ||| ||||||||||||||||||||||||||||
Sbjct 1800 AATCTATGTTAGTCACTGAGATAGATAAAGATCGTTTTCTCATGATCTATGGGTTGTTTC 1859
Query 1817 ATGGATCGTTAAAATGTTTATTTAATTAGATTTCTT 1852
|||||| ||||||| |||||||| |||||||||||
Sbjct 1860 GTGGATCATTAAAATATTTATTTATTTAGATTTCTT 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91666195170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5