BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474972
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63840.1 | Symbols: | RING/U-box superfamily protein | chr1... 800 0.0
AT5G41400.1 | Symbols: | RING/U-box superfamily protein | chr5... 193 3e-48
> AT1G63840.1 | Symbols: | RING/U-box superfamily protein | chr1:23689697-23690807
REVERSE LENGTH=1111
Length=1111
Score = 800 bits (433), Expect = 0.0
Identities = 668/773 (86%), Gaps = 50/773 (6%)
Strand=Plus/Plus
Query 1 AGAAACATCATCACCACACATTCCTGGCTATATATCCTTCATCTAGAACAATAATTAAAG 60
||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 77 AGAAACATCATCA-C-CACATTCCTGGCTA-ATATCCTTCATCTAGAACAATTATTAACG 133
Query 61 ACTCAAAATGCCAAAGGA-AAA-CA-CGCA---A--A-TAAA-T-GCACCTCATTGACT- 108
| ||||||| ||||| | ||| || | || | | |||| | | | || || | |
Sbjct 134 AATCAAAATACCAAAAAACAAAGCACCTCATTGACTATTAAATTAGTA-CTAATACATTA 192
Query 109 ATTAAATTAGTAATGCAT-TA-ATTAA-GT-A---ATTAAT-CA--TATAT-AT-A-AAT 155
||||| ||| | || | | || || || | | ||| | || | ||| || | |||
Sbjct 193 ATTAAGTTA-TTATTCCTATATATAAATCTCACCCATT-CTCCACCT-TATCATCACAAT 249
Query 156 CCCACCCT-TCTC-CATCT-TATCATCACAGTC-CAAATCTTATCATTTATCTCTCTCTA 211
|| | || |||| | ||| | || || | ||| | |||||||||||| ||||||||
Sbjct 250 CCAAAACTCTCTCTC-TCTCTCTC-TCTCTGTCTCTTGTCTTATCATTTA--TCTCTCTA 305
Query 212 ACGGCGAGGCAATGGGTTTTCCGGTGGGATATTCCGAGCTCCTTCTCCCAAAAATCTTCC 271
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 306 ACGGCGAGGCAATGGGTTTTCCGGTGGGATATTCTGAGCTACTTCTCCCAAAAATCTT-T 364
Query 272 TT-TACTTGCTCTCTTTCTTAGGTTTGATACGTAAACTCATCTCCACAATGTTCAAGGTC 330
|| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 365 TTCTACTTGTTATCTTTCTTAGGTTTGATACGTAAACTCATCTCCACAATGTTCAAGATC 424
Query 331 ATTGGTCTACCTGATTTCTTAGAACCTGAACCGGTTTCAACCTCATGGCCCGACCCACCA 390
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ATTGGTCTACCAGATTTCTTAGAACCTGAACCGGTTTCAACCTCATGGCCCGACCCACCA 484
Query 391 CCCACGTTGACCAAACCAGAGTCAGCAGCGATACTAGCCGGAGAGATGTTACCGGTTGTT 450
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 485 CCCACGTTGACCAAACCTGACTCAGCAGCAATACTAGCCGGAGAGATGTTACCGGTTGTT 544
Query 451 AGATTCTCGGATCTAAACCGACCCGAATCCGAATGTTGTGCAGTGTGTCTCTACGATTTC 510
||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 545 CGATTCTCGGATATAAACCGACCGGAATCCGAGTGTTGCGCAGTGTGTCTCTACGATTTC 604
Query 511 GAGAAAGACGACGAGATCCGACGGCTGACGAATTGTACT-CATATATTCCATCGGGGATG 569
||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 605 GAGAACGACGACGAGATCCGACGGCTGACGAATTGT-CGACATATATTTCATCGGGGATG 663
Query 570 TTTGGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTCGTACGCAGTT 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 664 TTTGGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTCGTACACAGTT 723
Query 630 TATACCTGATCATCTGCAACTGGAGTTTAATCAAAGACTTTGGTCTGAATCTTCTGGAG- 688
||||||||||||||| |||||||||||||||||||| || |||||| ||||||||| |
Sbjct 724 TATACCTGATCATCTTCAACTGGAGTTTAATCAAAGGCTCTGGTCTCAATCTTCTGCTGT 783
Query 689 --CTTCTCAACTTCTAGATGAATCATCATCTAATTAGGACATATTAAATCTTT 739
||||||||||||| ||||||||||||||| | ||||| ||||||||||||
Sbjct 784 TTCTTCTCAACTTCTTGATGAATCATCATCT--T-AGGACGTATTAAATCTTT 833
> AT5G41400.1 | Symbols: | RING/U-box superfamily protein | chr5:16569377-16570177
REVERSE LENGTH=801
Length=801
Score = 193 bits (104), Expect = 3e-48
Identities = 176/211 (83%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 473 CCGAATCCGAATGTTGTGCAGTGTGTCTCTACGATTTCGAGAAAGACGACGAGATCCGAC 532
||| |||||| || || || ||||| ||| |||| |||||||| || |||||||||||||
Sbjct 362 CCGGATCCGATTGCTGCGCGGTGTGCCTCCACGAGTTCGAGAACGATGACGAGATCCGAC 421
Query 533 GGCTGACGAATTGTAC-TCATATATTCCATCGGGGATGTTTGGACCGTTGGATGATGGGT 591
|||||||||||||| | || ||||| || ||| | ||||| ||||||||||||||||||
Sbjct 422 GGCTGACGAATTGT-CAACACATATTTCACCGGAGCTGTTTAGACCGTTGGATGATGGGT 480
Query 592 TATAATCAGATGACGTGTCCACTTTGTCGTACGCAGTTTATACCTGATCA-TCTGCAACT 650
||||||||||||||||||||||||||| | |||| |||||| ||||| | | | ||| |
Sbjct 481 TATAATCAGATGACGTGTCCACTTTGTAGAACGCCGTTTATTTCTGATGAGT-TACAAGT 539
Query 651 GGAGTTTAATCAAAGACTTTGGTCTGAATCT 681
| ||||| ||| || ||||||||||||||
Sbjct 540 TGCTTTTAACCAACGAGTTTGGTCTGAATCT 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5