BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475075 Length=901 Score E Sequences producing significant alignments: (Bits) Value AT1G62780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1387 0.0 > AT1G62780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 94 Blast hits to 94 proteins in 35 species: Archae - 6; Bacteria - 10; Metazoa - 21; Fungi - 2; Plants - 48; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:23249145-23251105 REVERSE LENGTH=957 Length=957 Score = 1387 bits (751), Expect = 0.0 Identities = 858/909 (94%), Gaps = 10/909 (1%) Strand=Plus/Plus Query 1 AAAAAAGCAGAGCTCACACTTAG-aaa-aaaaaaTTCTAATGGCTACGCTTTCGTTCGGA 58 ||||||||||||||||||||||| ||| |||||| |||||||||||||||||| ||| Sbjct 1 AAAAAAGCAGAGCTCACACTTAGAAAACAAAAAACAAAAATGGCTACGCTTTCGTTTGGA 60 Query 59 ATCGCCG-C-C-GCAACCACCGTCCGTACAATACCGAAATTTAATACACGGAGGAGCAAA 115 ||||||| | | ||||||||||||||||| || |||| ||||||| |||||||||||||| Sbjct 61 ATCGCCGCCGCTGCAACCACCGTCCGTACGATTCCGAGATTTAATTCACGGAGGAGCAAA 120 Query 116 ATCTCCTGCGAATGGGATCCGAAAGGTGTGTTAGGTCCGCCGCAAACTGGTCATATCGCT 175 ||| | |||||||||||||||||||||||||| |||||| | |||||||||||||| ||| Sbjct 121 ATCACATGCGAATGGGATCCGAAAGGTGTGTTGGGTCCGGCTCAAACTGGTCATATAGCT 180 Query 176 AGGCTTGAGTTTAAACGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAA 235 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGGCTTGAGTTTAAGCGTCGGCTAGAGAGAGATTCAGAGGCAAGAGAAGCTTTTCAGAAA 240 Query 236 CAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGAT 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CAACTTCGTGAAGAGAAAGAGCGTCGTCAAGCTCTTAGACAATCTAGAGTTGTACCGGAT 300 Query 296 ACTGCGGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTACGAG 355 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 301 ACTGCTGCGGAGCTGATTGAGTACTTTCTTGATACTGAAGCTCAGGAGATTGAGTATGAG 360 Query 356 ATCGCTAGGCTTCGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATC 415 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATCGCTAGGCTTAGAGGAAGGTTAAACGACGAATTCTTTGCGCAGATACGACTTGAAATC 420 Query 416 GGGCAGATTCGGTTTGCTGTTACTAAGACTGCGGAAAGTGAAGATAGATTGATTGAGCTT 475 || |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 421 GGACAGATTCGATTTGCTGTTACTAAGACTGCGGATATTGAAGATAGATTGATTGAGCTT 480 Query 476 GAAACACTTCAAAAAGCTTTAGAAGAGGGAATAGAGGCTTATGACAAAATGCAAAATGAG 535 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 481 GAAACACTTCAAAAAGCTTTAGAAGAAGGAATAGAGGCTTATGACAAAATGCAAAATGAG 540 Query 536 CTTATGACGGCTACAAATAGCTTAACCAAGA-TCTTAACCTCAACCGATATAAAAACCAC 594 ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 541 CTTATGACGGCTACAAATAGCTTAACCAA-ACTCTTAACCTCAACCGATATAAAAACCAC 599 Query 595 ATTATTGGATATGGTGGAGAAAAACGAAATCAACCGATCTTTGTTGGCACTTCTCGACGA 654 ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 600 ATTGTTGGATATGGTGGAGAAAAACCAAATCAACAGATCTTTGTTGGCACTTCTCGACGA 659 Query 655 AAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGAT 714 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AAACATAGCCAATGCATACAAAGGAAACCAGAAAGAAGCAGGAGATTACATGGAGAAGAT 719 Query 715 ACGTTCTTCGGTTCTAAAGTACTTGACAGTGTAGGATCATACGAGTCTTCGAAAGATTTC 774 ||| ||||| ||||| ||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 720 ACGCTCTTCAGTTCTTAAGTATTTGACAGTGTAGGATCATATGAGTCTTCGAAAGATTTC 779 Query 775 TCAAGCTTTTGAATGTTTTCTATTATCGGGTAAAAATGTATTTATATTTTTGTTTTGTTG 834 |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||| Sbjct 780 TCAAGCTTTTGAATGTTTTCTATTATCGGGGAAAATTGTATTTATATTTTTGTTT-GTTG 838 Query 835 AGTAAAATGTATTT-CTTTCTT-CCGAACGATGATTATATCTTTAAGGTCGTTTCAGATC 892 |||||||||||||| |||| || |||||||||| |||||| |||| |||| ||||||||| Sbjct 839 AGTAAAATGTATTTTCTTTTTTTCCGAACGATGTTTATATTTTTAGGGTCATTTCAGATC 898 Query 893 TCCAAGTAA 901 | ||||||| Sbjct 899 TTCAAGTAA 907 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44005112772 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5