BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475077
Length=2619
Score E
Sequences producing significant alignments: (Bits) Value
AT1G62750.1 | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | Translatio... 4146 0.0
AT1G62740.1 | Symbols: Hop2 | stress-inducible protein, putativ... 124 3e-27
> AT1G62750.1 | Symbols: ATSCO1, ATSCO1/CPEF-G, SCO1 | Translation
elongation factor EFG/EF2 protein | chr1:23233434-23236447
REVERSE LENGTH=2666
Length=2666
Score = 4146 bits (2245), Expect = 0.0
Identities = 2519/2647 (95%), Gaps = 36/2647 (1%)
Strand=Plus/Plus
Query 1 AGTGATACGTTAGCCAAAGAGTG--ACCAATTGATTCAATATCATCaagaagaagaagaa 58
||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||
Sbjct 28 AGTGATACGTTAGCCAAAGAGTGTCACCAATTGATTCAATATC-CCAAGAGGAAGAAGAA 86
Query 59 gaag-aagaagaagaagaagaaagaagCGATTTTGATAAAAATGGCGGCGGATGCTCTGA 117
|||| ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 87 GAAGCAAG-AGAAGAAGAAGATAGAAGCGATTTTTATAAAAATGGCGGCGGATGCTCTGA 145
Query 118 GAATTTCGAGTTCTAGTTCTGGTTCGTTAGTTTGTAATCTTAATGGTTCACAAAGACGAC 177
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 146 GAATCTCGAGTTCTAGTTCTGGTTCGTTGGTTTGTAATCTTAATGGTTCACAAAGACGAC 205
Query 178 CTGTTCTTCTTCCTCTGTCTCATCGTCCAACGTTTCTGGGTCTTCCTCCTCGAGCTTCAT 237
|||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||
Sbjct 206 CTGTTCTTCTTCCTCTGTCTCATCGTGCTACCTTTCTGGGTCTTCCTCCTCGTGCTTCAT 265
Query 238 CTTCTTCCATTTCTTCTTCAATTCCTCAGTTTCTGGGTACTTCTCGTATTGGGCTTGGTT 297
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 266 CTTCTTCGATTTCTTCTTCAATTCCTCAGTTTCTGGGTACTTCTCGTATTGGGCTAGGTT 325
Query 298 CTTCCAAGCTCTCACACAAGAAG--A-AATTCTCAGTCTTCGCTGCAGCTGAAGGAGAGG 354
|||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||
Sbjct 326 CTTCCAAGCTCTCACAAAAGAAGAAACAATTCTCAGTCTTCGCTGCAGCTGAAGCCGAGG 385
Query 355 CTAAGCGCGCTGTACCGCTTAAAGATTACCGAAACATCGGTATTATGGCTCACATAGACG 414
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 CGAAGCGGGCTGTACCGCTTAAAGATTACCGAAACATCGGTATTATGGCTCACATAGACG 445
Query 415 CGGGAAAAACTACAACAACTGAGAGGATTCTTTACTACACAGGAAGAAACTACAAAATCG 474
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 446 CGGGAAAGACGACAACAACCGAGAGGATTCTTTACTACACAGGAAGAAACTACAAAATCG 505
Query 475 GTGAAGTTCATGAAGGGACAGCTACAATGGATTGGATGGAACAAGAGCAAGAAAGAGGAA 534
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 506 GTGAAGTGCATGAAGGGACAGCTACAATGGATTGGATGGAACAAGAGCAAGAACGAGGAA 565
Query 535 TCACTATTACCTCAGCTGCAACCACAACGTTTTGGGACAAACATAGGATTAATATTATTG 594
|||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 566 TCACCATTACTTCAGCTGCAACCACAACGTTTTGGGATAAACACAGGATCAATATTATTG 625
Query 595 ATACACCGGGTCACGTCGATTTCACTCTTGAAGTTGAACGTGCTCTT-AGAGTTCTCGAT 653
|||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||
Sbjct 626 ATACACCGGGTCACGTCGATTTCACTCTGGAAGTTGAACGTGCT-TTAAGAGTTCTCGAT 684
Query 654 GGAGCTATATGCTTGTTTGATAGTGTTGCTGGTGTTGAGCCTCAGTCTGAGACTGTGTGG 713
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 GGAGCTATATGCTTGTTCGATAGTGTTGCTGGTGTTGAGCCTCAGTCTGAGACTGTGTGG 744
Query 714 AGACAAGCTGATAAATACGGTGTGCCTCGGATTTGCTTTGTTAACAAGATGGACCGTCTT 773
||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | |||
Sbjct 745 AGACAAGCTGATAAATATGGTGTGCCTAGGATTTGCTTTGTTAACAAGATGGACAGGCTT 804
Query 774 GGAGCTAACTTTTTCAGGACTAGGGACATGATTGTGACCAATTTGGGTGCTAAGCCATTG 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 805 GGAGCTAACTTTTTCAGGACTAGGGACATGATTGTGACCAATTTGGGTGCTAAGCCGCTG 864
Query 834 GTGCTTCAGATTCCAATTGGTGCTGAAGATGTCTTTAAAGGTGTTGTTGATCTTGTGAGG 893
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GTGCTTCAGATACCAATTGGTGCTGAAGATGTCTTTAAAGGTGTTGTTGATCTTGTGAGG 924
Query 894 ATGAAAGCTATAGTTTGGTCAGGAGAAGAGCTTGGTGCCAAGTTCAGTTACGAGGATATT 953
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 925 ATGAAAGCTATAGTTTGGTCAGGAGAAGAGCTTGGTGCAAAGTTCAGTTACGAGGATATT 984
Query 954 CCAGTGGATCTTGAAGATTTGGCTCAAGAGTATCGGGCTGCGATGATGGAATTGATTGTT 1013
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 985 CCAGAAGATCTTGAAGATTTGGCTCAAGAGTATCGGGCGGCGATGATGGAATTGATTGTT 1044
Query 1014 GATTTGGATGATGAGGTCATGGAGAACTATTTAGAAGGAGTTGAGCCTGACGAGGCCACG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GATTTGGATGATGAGGTCATGGAGAACTATTTAGAAGGAGTTGAGCCTGACGAGGCCACG 1104
Query 1074 GTAAAGAGATTAGTTAGAAAAGGAACCATCACCGGCAAGTTTGTGCCTATTCTATGTGGT 1133
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1105 GTAAAGAGATTGGTTAGAAAAGGAACCATCACGGGCAAGTTTGTGCCAATTCTATGTGGT 1164
Query 1134 TCAGCCTTTAAGAATAAAGGTGTGCAGCCATTGCTTGATGCTGTGGTTGATTATCTGCCT 1193
|||||||||||||| ||||| |||||||||||||| || |||||||| ||||||||||||
Sbjct 1165 TCAGCCTTTAAGAACAAAGGAGTGCAGCCATTGCTCGACGCTGTGGTCGATTATCTGCCT 1224
Query 1194 TCGCCGGTTGAAGTCCCGCCGATGAACGGAACAGATCCTGAGAACCCGGAAGTTACCATT 1253
||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1225 TCGCCCGTTGAAGTCCCGCCGATGAATGGAACAGATCCTGAGAACCCGGAAATTACCATT 1284
Query 1254 ATACGGAAACCAGATGATGATGAGCCATTTGCTGGGTTAGCATTCAAGATCATGAGTGAT 1313
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1285 ATACGGAAACCAGATGATGACGAGCCATTTGCTGGGCTAGCATTCAAGATCATGAGTGAT 1344
Query 1314 CCTTTTGTGGGTTCTCTTACATTTGTGAGGGTTTACTCAGGGAAAATCTCGGCTGGTTCT 1373
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1345 CCTTTTGTGGGTTCTCTTACATTTGTGAGGGTTTACTCAGGGAAAATCTCAGCTGGTTCT 1404
Query 1374 TACGTGTTGAATGCTAACAAAGGAAAGAAGGAGAGAATCGGAAGACTATTGGAAATGCAC 1433
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1405 TACGTGTTGAATGCTAACAAAGGAAAGAAGGAGAGAATCGGAAGACTCTTGGAAATGCAC 1464
Query 1434 GCAAATAGCAGAGAAGATGTTAAAGTGGCTTTGACAGGTGACATTATCGCTCTTGCGGGT 1493
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 GCAAACAGCAGAGAAGATGTTAAAGTGGCTTTGACAGGTGACATTATCGCTCTTGCGGGT 1524
Query 1494 CTCAAAGATACAATCACTGGTGAGACCCTGAGTGATCCAGAAAACCCTGTTGTTCTTGAA 1553
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 1525 CTCAAAGATACAATCACTGGTGAAACCTTGAGTGATCCAGAAAACCCCGTTGTTCTTGAA 1584
Query 1554 CGAATGGACTTCCCTGATCCCGTCATCAAGGTAGCGATTGAGCCAAAAACGAAAGCAGAC 1613
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1585 CGAATGGACTTCCCTGATCCCGTCATCAAGGTAGCGATTGAGCCAAAAACAAAAGCAGAC 1644
Query 1614 ATTGATAAAATGGCGACAGGATTGATCAAGCTCGCTCAAGAAGACCCGTCTTTCCATTTT 1673
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1645 ATCGACAAAATGGCGACAGGGTTGATCAAGCTCGCTCAAGAAGACCCGTCTTTCCATTTT 1704
Query 1674 TCCCGTGATGAAGAGTTGAACCAAACCGTCATTGAAGGAATGGGAGAACTTCATCTCGAG 1733
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1705 TCTCGTGATGAAGAGATGAACCAAACCGTCATTGAAGGAATGGGAGAACTTCATCTCGAG 1764
Query 1734 ATTATCGTTGACAGACTTAAAAGAGAGTTCAAGGTGGAGGCTAACGTTGGTGCACCACAA 1793
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1765 ATTATCGTTGACAGACTTAAAAGAGAGTTCAAGGTGGAGGCTAACGTTGGTGCACCGCAA 1824
Query 1794 GTCAACTACCGTGAGAGTATCTCCAAAATAGCGGAAGTGAAATACACACACAAGAAGCAA 1853
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1825 GTCAACTACCGTGAGAGTATCTCCAAAATAGCTGAAGTGAAATACACACACAAGAAGCAA 1884
Query 1854 TCAGGTGGACAAGGTCAGTTTGCTGATATTACAGTCCGGTTTGAGCCATTGGAAGCAGGA 1913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1885 TCAGGTGGACAAGGTCAGTTTGCTGATATTACAGTCCGGTTTGAGCCATTGGAAGCAGGG 1944
Query 1914 TCAGGATACGAATTCAAGAGTGAGATTAAAGGAGGAGCTGTGCCAAGAGAGTATATTCCC 1973
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1945 TCAGGATACGAATTCAAGAGTGAGATCAAAGGAGGAGCTGTGCCAAGAGAGTATATTCCT 2004
Query 1974 GGTGTCATGAAAGGACTTGAGGAGTGTATGAGCTCCGGTGTGCTTGCTGGTTAT-CCGGT 2032
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 2005 GGTGTCATGAAAGGACTTGAGGAGTGTATGAGCACCGGTGTGCTTGCTGGTT-TCCCGGT 2063
Query 2033 TGTTGATGTCCGTGCTTGTCTAGTTGACGGATCTTACCATGATGTGGACTCAAGTGTGCT 2092
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 2064 TGTTGATGTCCGTGCTTGTCTAGTTGACGGATCTTACCATGACGTAGACTCAAGCGTGCT 2123
Query 2093 AGCTTTCCAGCTTGCTGCAAGAGGAGCTTTCCGTGAAGGGATGAGGAAAGCGGGTCCGAG 2152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2124 AGCTTTCCAGCTTGCTGCAAGAGGAGCTTTCCGTGAAGGGATGAGGAAAGCGGGTCCGAG 2183
Query 2153 AATGCTTGAACCTATCATGAGAGTTGAAGTTGTTACACCAGAAGAACATCTTGGTGATGT 2212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2184 AATGCTTGAACCTATCATGAGAGTTGAAGTTGTTACACCAGAAGAACATCTTGGTGATGT 2243
Query 2213 CATTGGTGATCTTAACTCACGAAGAGGTCAAATTAACAGCTTCGGAGACAAACCCGGTGG 2272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2244 CATTGGTGATCTTAACTCACGAAGAGGTCAAATTAACAGCTTCGGAGACAAACCCGGTGG 2303
Query 2273 TCTCAAGGTGGTGGATTCTCTGGTTCCATTAGCAGAGATGTTTCAGTATGTGAGTACATT 2332
|||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2304 TCTCAAGGTGGTCGACTCTCTGGTTCCATTGGCAGAGATGTTTCAGTACGTGAGTACATT 2363
Query 2333 GAGAGGGATGACAAAAGGTCGAGCTTCTTACACAATGCAACTGGCTAAGTTCGATGTTGT 2392
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2364 GAGAGGGATGACAAAAGGTCGAGCTTCTTACACAATGCAACTGGCTAAGTTCGACGTTGT 2423
Query 2393 TCCTCAGCATATTCAGAACAAACTTTCAGACAAAGATCAAGAAGTTACTGCTTAGAACAG 2452
|||||| |||||||||||| |||||||| ||| |||||||||||| ||||||| |||||
Sbjct 2424 TCCTCAACATATTCAGAACCAACTTTCATCCAAGGATCAAGAAGTTGCTGCTTA-AACAG 2482
Query 2453 ATTTTGTTTTGCCTACACTTAAAA-CTTATTGTGATTTTGTTTGGTTTATTATACAGACA 2511
||||||||||||||| || ||||| ||||||||||||||||||||| ||| ||| ||||
Sbjct 2483 ATTTTGTTTTGCCTAGACATAAAAACTTATTGTGATTTTGTTTGGTCTAT-ATA--GACA 2539
Query 2512 TGTAAGCTAATCAAATTTGT----------T----ATTGTCTTAAAACACATGGATATGA 2557
|||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 2540 TGTAAGCTAATCAAATTTGTGAAGACAAGGTTGTTATTGTCTTAAAACGCATGGATATGA 2599
Query 2558 Gaaa-aaa-aT---TTGATATATCAGAAAAGTCTGAAAAATGGGACGAATTCGATCTTAG 2612
|||| ||| | |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2600 GAAAGAAAGAAAAATTGATATATCAGAAAAGTCTGAAAAATGAGAAGAATTCGATCTTAG 2659
Query 2613 TGTTTGG 2619
|||||||
Sbjct 2660 TGTTTGG 2666
> AT1G62740.1 | Symbols: Hop2 | stress-inducible protein, putative
| chr1:23230956-23233543 FORWARD LENGTH=1949
Length=1949
Score = 124 bits (67), Expect = 3e-27
Identities = 88/97 (91%), Gaps = 5/97 (5%)
Strand=Plus/Minus
Query 2528 TTGTTATTGTCTTAAAACACATGGATAT--G--AGaaa-aaaaTTTGATATATCAGAAAA 2582
|||||||||||||||||| ||||||||| | ||||| |||| ||||||||||||||||
Sbjct 1936 TTGTTATTGTCTTAAAACGCATGGATATGAGAAAGAAAGAAAAATTGATATATCAGAAAA 1877
Query 2583 GTCTGAAAAATGGGACGAATTCGATCTTAGTGTTTGG 2619
|||||||||||| || |||||||||||||||||||||
Sbjct 1876 GTCTGAAAAATGAGAAGAATTCGATCTTAGTGTTTGG 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130032716256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5