BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475116 Length=1958 Score E Sequences producing significant alignments: (Bits) Value AT1G62300.1 | Symbols: WRKY6, ATWRKY6 | WRKY family transcripti... 2817 0.0 AT4G22070.1 | Symbols: WRKY31, ATWRKY31 | WRKY DNA-binding prot... 390 2e-107 > AT1G62300.1 | Symbols: WRKY6, ATWRKY6 | WRKY family transcription factor | chr1:23016683-23019279 REVERSE LENGTH=1990 Length=1990 Score = 2817 bits (1525), Expect = 0.0 Identities = 1808/1939 (93%), Gaps = 41/1939 (2%) Strand=Plus/Plus Query 1 ACAGACTCTTTCTTAAtctctctctctctTTAAACCAAA-CCC-AAA-AACAATAATAT- 56 |||||||||||||||| ||||||||||||| ||||||| ||| ||| || || || || Sbjct 1 ACAGACTCTTTCTTAA--TCTCTCTCTCTTTCAACCAAACCCCTAAACAAAAAAAAAATA 58 Query 57 CAttttctgatctctctctaaaaatctttaatctcctttcgttaatctcgtgatcttctt 116 |||||||||| |||||||||||||| || ||||| |||||||||||||||||| || | Sbjct 59 CATTTTCTGA--TCTCTCTAAAAATC-TT--TCTCC-TTCGTTAATCTCGTGATC-TC-T 110 Query 117 cttcttcttcttctATATATGGACAGAGGATGGTCTGGTCTCACTCTTGATTCATCTTCT 176 ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111 -TTC-T-TT-TTCTATATATGGACAGAGGATGGTCTGGTCTCACTCTTGATTCATCTTCT 166 Query 177 CTCGATCTTTTAAACCCTAATCGTATTACTCATAACAATCACCGACGTTTCTCAAATCCT 236 || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 167 CTTGATCTTTTAAACCCTAATCGTATTTCTCATAAGAATCACCGACGTTTCTCAAATCCT 226 Query 237 TTGACGATGTCTAGAATTGACGAAGATGATGATCAGAAGACGAAAATATCAACCAACGGT 296 ||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 227 TTGGCGATGTCTAGAATTGACGAAGAAGATGATCAGAAGACGAGAATATCAACCAACGGT 286 Query 297 AGTGAATTTAGGTTTCCCGTGAGTCTCTCCGGTATTCGTGATCGTGAAGATGATGATTTT 356 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct 287 AGTGAATTTAGGTTTCCGGTGAGTCTCTCAGGTATTCGTGATCGTGAAGATGAAGATTTT 346 Query 357 TCATCTGGCGTCGCCGGAGATAATGACCGTGAAGTTCCCGGCGAGGTGGATTTCTTCTCC 416 ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 347 TCATCTGGCGTTGCTGGAGATAATGACCGTGAAGTTCCCGGCGAAGTGGATTTCTTCTCC 406 Query 417 GACAAGAAATCTAGGGTTTGTCGTGAAGACGACGACGGATTTCGTGTTAAGAAGGAAGAA 476 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 407 GACAAGAAATCTAGGGTTTGTCGTGAAGACGACGAAGGATTTCGTGTGAAGAAGGAAGAA 466 Query 477 CAAGATGATCGAACGGATGTAAACACCGGTTTGAATCTTCGAACAACGGGTAATACAAAG 536 ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| Sbjct 467 CAAGATGATCGAACGGACGTAAATACCGGTTTGAATCTTCGAACAACTGGTAATACAAAG 526 Query 537 AGTGATGAGTCAATGATCGACGATGGAGAATCTTCTGAAATGGAAGATAAGCGTGCGAAA 596 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 527 AGTGATGAGTCAATGATCGATGATGGAGAATCTTCCGAAATGGAAGATAAGCGTGCGAAA 586 Query 597 AATGAGTTGGTTAAGTTACAAGATGAGTTGAAGAAAATGACAATGGACAATCAAAAGCTT 656 ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 587 AATGAGTTGGTGAAATTACAAGATGAGTTGAAGAAAATGACAATGGATAATCAAAAGCTT 646 Query 657 AGAGAATTGCTTACACAAGTGAGCAACAGTTACACTTCACTTCAGATGCATCTTGTTTCA 716 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 647 AGAGAATTGCTTACACAAGTTAGCAACAGTTACACTTCACTTCAGATGCATCTTGTTTCA 706 Query 717 CTAATGCAGCAACAACAACAACAGAATAATAAGGTAATAGAGGCTGCTGAGAAACCTGAG 776 |||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 707 CTAATGCAGCAACAGCAACAACAGAACAATAAGGTAATAGAAGCTGCTGAGAAGCCTGAG 766 Query 777 GAGACGATAGTACCGAGGCAATTTATTGATTTAGGCCCTACAAGAGCAGTGGGCGAGGCC 836 |||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||| Sbjct 767 GAGACGATAGTACCAAGGCAATTTATTGATTTAGGCCCTACGAGAGCAGTAGGTGAGGCC 826 Query 837 GAGGATGTATCGAATTCTTCATCCGAAGATAGAACTCGTTCAGGCGGTTCTTCTGCGGCC 896 |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||| Sbjct 827 GAGGATGTGTCAAATTCTTCATCCGAAGATAGAACTCGTTCGGGGGGTTCTTCTGCAGCC 886 Query 897 GAGAGGCGTAGTAACGGGAAGAGACTTGGGCGTGAAGAAAGTCCCGAAACCGAGTCCAAC 956 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 887 GAGAGGCGTAGTAACGGGAAGAGACTTGGGCGTGAAGAAAGCCCCGAAACTGAGTCCAAC 946 Query 957 AAAATTCAGAAGGTGAATTCTACTACCCCGACGACATTTGATCAATCCGCTGAAGCTACG 1016 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 947 AAAATTCAGAAGGTGAATTCTACTACCCCGACGACATTTGATCAAACCGCTGAAGCTACG 1006 Query 1017 ATGAGGAAAGCCCGTGTCTCGGTTCGTGCCCGATCGGAAGCTCCCATGATAAGCGATGGA 1076 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1007 ATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCTCCGATGATAAGCGATGGA 1066 Query 1077 TGTCAATGGAGAAAGTATGGCCAGAAGATGGCTAAAGGGAATCCTTGTCCTCGGGCATAT 1136 |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 1067 TGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATAT 1126 Query 1137 TACCGCTGCACAATGGCCACGGGTTGTCCCGTTCGCAAACAGGTTCAACGTTGTGCGGAA 1196 ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct 1127 TACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAGTTCAACGTTGCGCGGAA 1186 Query 1197 GACAGATCAATTCTGATAACGACCTACGAGGGAAACCATAACCATCCGTTGCCGCCAGCC 1256 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1187 GACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCATCCGTTGCCGCCAGCC 1246 Query 1257 GCGGTGGCCATGGCTTCTACCACCACGGCTGCGGCTAACATGTTGCTATCTGGATCAATG 1316 ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct 1247 GCGGTAGCCATGGCTTCTACCACCACGGCGGCGGCTAACATGTTGCTATCCGGGTCAATG 1306 Query 1317 TCTAGTCAAGATGGGATGATGAACCCTACAAATTTACTAGCTAGGGCTGTTCTTCCTTGC 1376 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1307 TCTAGTCACGACGGGATGATGAACCCTACAAATTTACTAGCTAGGGCTGTTCTTCCTTGC 1366 Query 1377 TCCACAAGCATGGCCACAATCTCAGCCTCCGCGCCGTTTCCCACCGTCACATTAGACCTC 1436 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1367 TCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCCAACCGTCACATTAGACCTC 1426 Query 1437 ACCCACTCACCACCGCCTTCTAATGGTTCCAACCCTTCCTCTTCCGCAGCCGCCACCAGC 1496 ||||||||||| |||||| ||||||||||||| |||||||||||||| | || |||| | Sbjct 1427 ACCCACTCACCTCCGCCTCCTAATGGTTCCAATCCTTCCTCTTCCGC-G--GCTACCAAC 1483 Query 1497 AACAACAACAAC-CACA-ACT-CATTGAT-GCAACGGCCGCAACAGCAAATGACGAATTT 1552 |||||| ||||| ||| | | || | ||||| | ||||||||||||||||| || Sbjct 1484 AACAACCACAACTCACTGA-TGCAGCGGCCGCAACAACAACAACAGCAAATGACGAACTT 1542 Query 1553 ACCCCCGGGTATGCTACCTCATGTAATAGGTCAAGCATTGTATAACCAATCCAAGTTCTC 1612 ||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1543 ACCTCCGGGAATGCTACCTCATGTAATAGGCCAGGCATTGTATAACCAATCCAAGTTCTC 1602 Query 1613 AGGGCTGCAGTTCTCCGGTGGCTCTCCCTCGACGGCAGCGTTTTCTCAGTCACACGCGGT 1672 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1603 GGGGCTGCAGTTCTCTGGTGGCTCTCCCTCGACGGCAGCGTTTTCTCAGTCACACGCGGT 1662 Query 1673 GGCTGATACAATAACGGCACTCACAGCTGACCCGAATTTCACGGCGGCTCTTGCAGCCGT 1732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1663 GGCTGATACAATAACGGCACTCACAGCTGACCCGAATTTCACGGCGGCTCTTGCAGCCGT 1722 Query 1733 TATTTCTTCTATGATCAATGGTTCGAACCACCACGACGGCCAAGGAAACAACAAAAGTCA 1792 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||| Sbjct 1723 TATTTCTTCTATGATCAATGGTACGAACCACCACGACGGCGAAGGAAACAACAAAAATCA 1782 Query 1793 ATAGAAAAATATTACAAttttttttt---t-t-t---ttttt---C-AACTGGGTTATAG 1840 |||||||||||||||| ||||||||| | | | ||||| | ||||||||||||| Sbjct 1783 ATAGAAAAATATTACATTTTTTTTTTGGGTATCTACATTTTTTTTCCAACTGGGTTATAG 1842 Query 1841 GAAACAGAGAGTTTATTTCATTGATTCACATTTGTTCTTCTGTTTCGTACCAAAATTCCA 1900 |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 1843 GAAACAGAGAGTTTATTTCATTGATTCACATTTGTTCT---GTTTCGTACCAAAATCCCA 1899 Query 1901 GTAAATATACAAAAGaaaa 1919 ||||||||||||||| ||| Sbjct 1900 GTAAATATACAAAAGCAAA 1918 > AT4G22070.1 | Symbols: WRKY31, ATWRKY31 | WRKY DNA-binding protein 31 | chr4:11691378-11694392 REVERSE LENGTH=1778 Length=1778 Score = 390 bits (211), Expect = 2e-107 Identities = 371/449 (83%), Gaps = 8/449 (2%) Strand=Plus/Plus Query 1003 CCGCTGAAGCTACGATGAGGAAAGCCCGTGTCTCGGTTCGTGCCCGATCGGAAGCTCCCA 1062 |||| ||||| || ||| |||||||||||||||| |||||||||||||| |||||| ||| Sbjct 982 CCGCAGAAGCCACCATGCGGAAAGCCCGTGTCTCAGTTCGTGCCCGATCTGAAGCTGCCA 1041 Query 1063 TGATAAGCGATGGATGTCAATGGAGAAAGTATGGCCAGAAGATGGCTAAAGGGAATCCTT 1122 ||||||||||||||||||||||||||||||| || || || ||||||||||| || || | Sbjct 1042 TGATAAGCGATGGATGTCAATGGAGAAAGTACGGACAAAAAATGGCTAAAGGAAACCCGT 1101 Query 1123 GTCCTCGGGCATATTACCGCTGCACAATGGCCACG-GGTTGTCCCGTTCGCAAACAGGTT 1181 |||| ||||| ||||| || |||||||||||| | || ||||| |||||||| || || Sbjct 1102 GTCCGCGGGCTTATTATCGTTGCACAATGGCCG-GTGGATGTCCAGTTCGCAAGCAAGTG 1160 Query 1182 CAACGTTGTGCGGAAGACAGATCAATTCTGATAACGACCTACGAGGGAAACCATAACCAT 1241 || ||||| || ||||||||||| ||||| ||||| |||||||| |||||||| |||||| Sbjct 1161 CAGCGTTGCGCAGAAGACAGATCTATTCTCATAACCACCTACGAAGGAAACCACAACCAT 1220 Query 1242 CCGTTGCCGCCAGCCGCGGTGGCCATGGCTTCTACCACCACGGCTGCGGCTAA-CATGTT 1300 || | || |||||||| ||||||||| || || ||||| || || || || |||| | Sbjct 1221 CCACTCCCACCAGCCGCTACGGCCATGGCCTCAACAACCACCGCAGCTGC-AAGCATGCT 1279 Query 1301 GCTATCTGGATCAATGTCTAGTCAAGATGGGATGATGAACCCTACAAATTTACTAGCTAG 1360 || || || |||||||| |||||||| || | |||||||| ||||| | |||||| | Sbjct 1280 CCTCTCGGGCTCAATGTCGAGTCAAGACGGTTTAATGAACCCAACAAACCTCCTAGCTCG 1339 Query 1361 GGCTGTTCTT-CCTTGCTCCACAAGCATGGCCACAATCTCAGCCTCCGCGCCGTTTCCCA 1419 ||| | ||| ||||||||| |||||||||| ||||||||||||||||| || || |||| Sbjct 1340 AGCTAT-CTTGCCTTGCTCCTCAAGCATGGCTACAATCTCAGCCTCCGCACCATT-CCCA 1397 Query 1420 -CCGTCACATTAGACCTCACCCACTCACC 1447 || ||||||| ||||||||| | ||||| Sbjct 1398 ACCATCACATTGGACCTCACCAATTCACC 1426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96987452940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5