BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475155
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61740.1 | Symbols: | Sulfite exporter TauE/SafE family pro... 2639 0.0
> AT1G61740.1 | Symbols: | Sulfite exporter TauE/SafE family protein
| chr1:22798069-22801073 REVERSE LENGTH=1726
Length=1726
Score = 2639 bits (1429), Expect = 0.0
Identities = 1587/1663 (95%), Gaps = 11/1663 (1%)
Strand=Plus/Plus
Query 1 AAAACCCCAAAACATAAAAATGAGAAACAATTTCGTCCCTATAGTTTTCTCCTTCATCAC 60
|||||||| ||||| |||||||||||||||||||||||||||| | | | || | |
Sbjct 35 AAAACCCCCAAACAAAAAAATGAGAAACAATTTCGTCCCTATA---AT-T-C-TC-T--C 85
Query 61 CTTCATCATCTTCTTAACTCCATCAATCGCAGAACAAGAACCTTCACTTCTTTCTCCCGT 120
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 86 CTTCATCATCTTCTTGACTCCATCAATCGCAGAACAAGAACCTTCAATTCTTTCTCCCGT 145
Query 121 CGATCATTTCCTAAACAAAACAAGCTCATACCTCGATTTTTCAACAAAATTCAACCAACC 180
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 CGATCAACTCCTCAACAAAACAAGCTCATACCTCGATTTTTCAACAAAATTCAACCAACC 205
Query 181 AAAAATCGAATTAACAACATCAACGATCATCGCCGGCTTACTATCTTTCCTAGCTTCATC 240
|| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 206 AAGAATCGAACTAACAACATCAACGATCATCGCCGGCTTACTCTCTTTCCTAGCTTCATC 265
Query 241 AATCTCAAGCGCCGGTGGAATCGGCGGTGGAGGTTTATACGTTCCGATAATGACAATTGT 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 266 AATCTCAAGCGCCGGTGGAATCGGCGGTGGAGGTTTATATGTTCCGATAATGACAATCGT 325
Query 301 GGCTGGTCTCGATCTAAAAACAGCTTCAAGCTTCTCAGCTTTTATGGTTACTGGTGGATC 360
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GGCCGGTCTCGATCTAAAGACAGCTTCAAGCTTCTCAGCTTTTATGGTTACTGGTGGATC 385
Query 361 TATAGCTAACGTGGGATGCAATCTATTCGTTAGAAACCCTAAATCTGGTGGCAAAACCCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TATAGCTAACGTGGGATGCAATCTATTCGTTAGAAACCCTAAATCTGGTGGCAAAACCCT 445
Query 421 AATCGATTTCGATTTAGCTCTTTTATTGGAACCATGTATGCTTCTTGGAGTTAGTATTGG 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 AATCGACTTCGATTTAGCTCTTTTATTGGAACCATGTATGCTTCTTGGAGTTAGTATTGG 505
Query 481 TGTGATCTGTAACCTTGTTTTTCCGAACTGGTTGATTACGTCTCTCTTCGCTGTGTTTCT 540
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 506 TGTGATCTGTAATCTTGTTTTTCCGAACTGGTTGATTACGAGTCTCTTCGCTGTGTTTCT 565
Query 541 TGCGTGGTCGACGTTGAAGACTTTTGGAAATGGACTTTATTATTGGAGATTGGAATCAGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 566 TGCGTGGTCGACGTTGAAGACTTTTGGAAATGGACTTTATTATTGGAGATTGGAATCGGA 625
Query 601 GATGGTGAAGATTAGAGAATCGAATCA-AATTGGAGAAGACGATGAAGAAGATAAGATTG 659
||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||
Sbjct 626 GATGGTGAAGATTAGAGAATCGAAT-AGAATTGAAGAAGATGATGAAGAAGATAAGATTG 684
Query 660 AGAGTCTGAAGTTGCCTCTCTTGGAGGATTATGAGAGACCAAAGAGGTTTCCATGGATTA 719
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 685 AGAGTCTAAAGTTGCCTCTCTTGGAGGATTATCAGAGACCAAAGAGGTTTCCATGGATTA 744
Query 720 AGCTTGGAGTTTTGGTGATTATTTGGCTTTCTTACTTCGCAGTTTATCTTCTTCGTGGAA 779
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 745 AGCTTGGAGTTTTGGTCATTATTTGGCTTTCTTACTTCGCAGTTTATCTTCTTCGAGGAA 804
Query 780 ACAAATATGGCGAGGGAATCATATCGATCGAGCCATGTGGAAACGCCTACTGGCTAATTT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 805 ACAAATATGGCGAGGGAATCATATCGATCGAGCCATGTGGAAACGCCTACTGGCTCATTT 864
Query 840 CATCGTCTCAAATACCACTCACTCTCTTCTTCACTCTATGGATCTGCTTCAGTGACAATG 899
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 865 CATCGTCTCAAATACCACTAACTCTCTTCTTCACTCTCTGGATCTGCTTCAGTGACAATG 924
Query 900 TTCAAAGCCAACAACCATCAGATTACCATGTCTCAGTAAAGGATGTAGAAGATTTGAGAT 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TTCAAAGCCAACAACAATCAGATTACCATGTCTCAGTAAAGGATGTAGAAGATTTGAGAT 984
Query 960 CAAATGATGGAGCAAGATCAAACAAGTGTATGTTTCCTGTAATGGCTCTTTTAGCTGGAG 1019
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 985 CAAATGATGGAGCAAGATCAAACAAGTGTATGTTCCCTGTAATGGCTCTATTAGCTGGAG 1044
Query 1020 TTTTGGGTGGTGTTTTTGGTATTGGAGGTGGAATGCTCATTAGTCCTCTTCTCCTCCAAG 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1045 TTTTGGGTGGTGTTTTTGGTATTGGAGGTGGAATGCTCATTAGTCCTCTTCTTCTCCAAG 1104
Query 1080 TCGGTATCGCTCCCGAGGTAACTGCAGCGACATGTTCTTTCATGGTTCTGTTTTCATCAA 1139
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1105 TTGGTATCGCTCCCGAGGTAACTGCAGCGACATGTTCTTTCATGGTTCTTTTTTCATCAA 1164
Query 1140 CAATGTCTGCGATTCAGTACTTGTTACTAGGCATGGAACATACTGGAACCGCAAGTATAT 1199
| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1165 CGATGTCTGCGATTCAATACTTATTACTAGGCATGGAACATACCGGAACCGCAAGTATAT 1224
Query 1200 TCGCGGTTATATGTTTTGTGGCATCACTCGTGGGACTAAAGGTGGTTCAAAAGGTAATAA 1259
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 TTGCGGTTATATGTTTTGTGGCATCACTCGTGGGACTAAAGGTGGTTCAAAAGGTAATAA 1284
Query 1260 CTGAGTATGGAAGGGCTTCGATCATCGTGTTCTCGGTTGGTATCGTCATGGCATTGAGCA 1319
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1285 CCGAGTATGGAAGGGCTTCGATCATTGTGTTCTCGGTTGGTATCGTCATGGCATTGAGTA 1344
Query 1320 TTGTGTTGATGACAAGCTATGGAGCTCTTGATGTTTGGAATGATTATGTCTCTGGTCGTT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 TTGTGTTGATGACAAGCTATGGAGCTCTTGATGTTTGGAATGATTATGTCTCTGGTCGTT 1404
Query 1380 ACATGGGTTTCAAGTTACCTTGTTGAGACCAAGTTTCATAAAAGATGTGTATATCATATC 1439
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1405 ACATGGGTTTCAAGTTACCTTGTTGAGACCAAGTTTCATAATACATGTGTATATCATATC 1464
Query 1440 ATCATGTTGTTGCTTTTTCATCCATTTGGTCATTTAGAGTTAATAAGCTTTCTGTTTCTT 1499
| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1465 ACCATGTTGTTGCTCTTTCATCCATTTGGTCATTTAGAGTTAACAAGCTTTCTATTTCTT 1524
Query 1500 TATTTTGTATGATTTTTAAATCACTATTCAGAATGCACATCTCGTGCATTCGAATATATG 1559
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 TCTTTTGTATGATTTTTAAATCACTATTCAGAATGCACATCTCGTGCATTCGAATATATG 1584
Query 1560 GTCAAATAAAATTTATGTTGTGGACATAAACTCAGTTTTTAATATCAAATTCTATGCAtt 1619
||||||||||| ||||||| ||||| |||| |||| ||| |||||| |||||||||||||
Sbjct 1585 GTCAAATAAAAGTTATGTTCTGGACCTAAATTCAGATTTCAATATCCAATTCTATGCATT 1644
Query 1620 tttttGTGTAGATTTATCGTCTTAATGCTGTACACAATCGCCG 1662
| ||||||||| ||||| ||| || || ||| |||||| ||||
Sbjct 1645 TGTTTGTGTAGTTTTATTGTCATAGTGTTGTCCACAATTGCCG 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82128091620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5