BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475161
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61660.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2344 0.0
> AT1G61660.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:22753715-22756295 REVERSE
LENGTH=1594
Length=1594
Score = 2344 bits (1269), Expect = 0.0
Identities = 1483/1580 (94%), Gaps = 39/1580 (2%)
Strand=Plus/Plus
Query 1 ATATATATAAACTTTGACCTTCGTATAGCAACGATCTAGTAGAAAGCATATATATACTAA 60
||||||| ||||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 49 ATATATAAAAACTTTAACCTTCGTATAGCAACGATCTAGTAGAAAGC---T-TATACTAA 104
Query 61 AACTTTCTGATTCTCTCT-ATATGGCGGATGAGTTTCGAGCGACGGC-TGCGATTTGTGG 118
|||||||||||||||| | |||||||||| |||||| ||| ||||| | ||||||||||
Sbjct 105 AACTTTCTGATTCTCT-TAATATGGCGGAGGAGTTTAAAGCTACGGCAT-CGATTTGTGG 162
Query 119 TGGCGGAGGTGGCGCGTGGTGGAACTCACCAAGGAGCGTTATGTCTCCTTCGGATCATTT 178
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 163 TGGCGGAGGTGGCGCGTGGTGGAACTCGCCAAGGAGCGTTATGTCTCCTTCGGATCATTT 222
Query 179 CTTGTCACCTTGTTTCGGAGCTTCTATTACTTCCGATGATTTTACCTCGCAAGAGAATAA 238
||||||||| || |||||||| |||| |||||| ||||||||| ||||||||||||| |
Sbjct 223 CTTGTCACCATGCTTCGGAGCGGCTATCACTTCCAATGATTTTAGCTCGCAAGAGAATCA 282
Query 239 TCTCAAAGCTAGGGTGACTAGTACGGacaacaacaacaacaacaacaTCGTTTTCGGGCA 298
||||||| ||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 283 TCTCAAATCTAGGATGACTTGTACGG---------ACAACAACAACATCGTTTTCGGGCA 333
Query 299 GCGAGAGGCGGATTCTGACAGTGGAGGAAGTACCGTGACGATGGATTCGACGTTGCAGAT 358
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 334 GCGAGAGGCGGATTCTGACAGTGGAGGAAGTACCGTGACGATGGACTCGACGTTGCAGAT 393
Query 359 GATGGGTCTAGGGTTTTCTTCAAATTCTTCTTCAGATTGGAGCCAAACCATTTTACAAGA 418
|||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 394 GATGGGTCTAGGGTTTTCCTCAAATTGTTCTTCAGATTGGAACCAAACCATTTTACAAGA 453
Query 419 AGACTTAAACTCAAGCTTCATAAGGAGCTCACAAGATCAAGATCATGGCCAAGGATTCTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AGACTTAAACTCAAGCTTCATAAGGAGCTCACAAGATCAAGATCATGGCCAAGGATTCTT 513
Query 479 ATCCACAACTACTTCACCTTATATACTTAATCCAGCGTGTTCTTCATCTCCATCAACTTC 538
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 514 ATCCACAACTACTTCACCTTATATACTTAATCCAGCTTGTTCTTCATCTCCATCAACTTC 573
Query 539 TTCTTCCTCGAGCTTGTTACGAACCTTTTACGAACCCGAACCAAGTCCATACAACTTTGT 598
||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 574 TTCGTCCTCAAGCTTGATACGAACCTTTTACGATCCCGAACCAAGTCCATACAACTTTGT 633
Query 599 CTCTACCACAAGTTGTTCAATCAACGATCATCAACTTTCTTGGGCTAATAAGACAAATCC 658
||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 634 CTCCACCACAAGTGGTTCAATCAACGATCCTCAACTTTCTTGGGCTAATAAGACAAATCC 693
Query 659 TCATCATCAAGCTT-CTTATGGATTAACTAACAACTTCTCTAACAACGCAAACTCTCGAC 717
||||||||||| | |||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 694 TCATCATCAAG-TAGCTTATGGACTAATTAACAGCTTCTCTAACAACGCAAACTCTCGAC 752
Query 718 CCTTTTGGAGTTCTTCATCAACCACTAACTTAAACAACACGACGCCAAACAATTTTGTAA 777
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 753 CCTTTTGGAATTCTTCATCAACCACTAACTTAAACAACACGACGCCGAGCAATTTTGTAA 812
Query 778 CCACTCCGCAGATAATATCTACTCGTTTAGAGGACAAAACCAAGAATCTGAAGACAAGAG 837
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 813 CCACTCCGCAGATAATATCTACTCGTTTGGAGGACAAAACCAAGAATCTGAAGACAAGAG 872
Query 838 CTCAGAGTGAGTCTTTGAAGAG-GACAAAGGATAGTGAATCTGCGGCGAAAAAACCGAGA 896
|||||||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||
Sbjct 873 CTCAGAGTGAGTCTTTGAAGAGAG-CAAAGGATAATGAATCTGCGGCGAAGAAACCGAGA 931
Query 897 GTCACCACGCCTTCACCGTTGCCAACTTTCAAGGTGAGAAAAGAGAATCTAAGGGACCAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 GTCACCACGCCTTCACCGTTGCCAACTTTCAAGGTGAGAAAAGAGAATCTAAGGGACCAG 991
Query 957 ATTACTTCATTACAACAACTAGTTTCACCTTTCGGAAAGACAGATACTGCATCTGTTCTC 1016
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 ATAACTTCATTACAACAACTAGTTTCACCTTTCGGAAAGACAGATACTGCATCTGTTCTC 1051
Query 1017 CAAGAAGCTATAGAGTACATCAAGTTCCTTCATGACCAAGTCACTGTTCTAAGCACTCCA 1076
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1052 CAAGAAGCTATAGAGTACATCAAGTTCCTTCACGACCAAGTCACTGTTCTAAGCACTCCA 1111
Query 1077 TATATGAAACAAGGTGCCTCGAGCcaacaacaacaacaacaGATATCTGGTAAGTCGAAG 1136
|| ||||||||||||||||||| |||||||||||| || |||||||||||| ||||||
Sbjct 1112 TACATGAAACAAGGTGCCTCGAACCAACAACAACAGCA---GATATCTGGTAAATCGAAG 1168
Query 1137 AATCAAGATGGAAATGAGAATCACGAACTAAGAGGACATGGTCTATGTCTCGTCCCAATA 1196
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AGTCAAGATGAAAATGAGAATCACGAACTAAGAGGACATGGTCTATGTCTCGTCCCAATA 1228
Query 1197 TCAAGCACGTTTCCGGTGGCTAACGAAACAACAGCCGATTTTTGGACGCCAACGTTTGGG 1256
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1229 TCAAGCACGTTTCCGGTGGCTAACGAAACAACAGCCGATTTTTGGACACCAACGTTTGGG 1288
Query 1257 GGCAACAATTTCAGGTAGGTGATTAAAGAGAGAGGATTATGGTTGTCAAGACGGATGGGA 1316
|||||||||||||||| | |||||||||||||| || |||||||||||||||||||||
Sbjct 1289 GGCAACAATTTCAGGT-G---ATTAAAGAGAGAGGGTTGTGGTTGTCAAGACGGATGGGA 1344
Query 1317 ACATATGCTAAATTCAGCTTGGAGACTCTAAAGCATAACAATAattttta-tgtattttc 1375
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1345 ACATATGCTAAATTCAGCTTGGAGACTCTAAAGCATAACAATAATTTTTAATGTATTTTC 1404
Query 1376 ttcttctttttatttcaatattttaagggagggttttattgctgaatttaGCAGATATGG 1435
||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 1405 TTCTTCTTT------CAATATTTTAAGGG-GGGTTT-ATTGCTGAATTTAGCATATATGG 1456
Query 1436 GTTGTTTTTATGTAGAATAACCTTTTGTTCCTGTCATTGTTCTTGAatatatatatatat 1495
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 GTTGTTTTTATGTTGAATAACCTTTTGTTCCTGTCATTGTTCTTGAATATATATATATA- 1515
Query 1496 aCATATTTTTGCCGTTGGTGCCATCTTTGTTAACCACTTATTAAAGTTAAAGAACATAAT 1555
|||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 1516 -CATATTTTTGTCGTTGGTAACATCTTTGTTAATCACTTATTAAAGTTAGAGAACATAAT 1574
Query 1556 AATTGGTGGTTTGTCATATG 1575
||||||||||||||||||||
Sbjct 1575 AATTGGTGGTTTGTCATATG 1594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5