BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475174 Length=1136 Score E Sequences producing significant alignments: (Bits) Value AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting c... 1810 0.0 > AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting complex gene 3 | chr1:22700010-22701383 FORWARD LENGTH=1198 Length=1198 Score = 1810 bits (980), Expect = 0.0 Identities = 1094/1147 (95%), Gaps = 16/1147 (1%) Strand=Plus/Plus Query 1 AAAACCAGTTGTGCTATTTGAAAACCACAAGTA-TTGG-ACCTTTGTTTCTTCTACCCTA 58 ||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||| Sbjct 1 AAAACCAGTTGGGCTATTTGAAAGCCACAAGTACTTGGAACCTTTGTTTCTTCTACCCTA 60 Query 59 ACATAGCTCC-TGCAGACCATAACTAAA-CA--ATCATCATAATCTCTTGGTGACAGAAG 114 ||||||| || |||| |||||||| ||| || |||||||| |||||||||||||||||| Sbjct 61 ACATAGC-CCTTGCAAACCATAACCAAACCATCATCATCATCATCTCTTGGTGACAGAAG 119 Query 115 AGAAGAGTTGAGGAACAGAGAAAATGGCAGCACAAGCACTTGTGTCTTCTTCACTTACCT 174 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 AAAAGAGTTGAGGAACAGAGAAAATGGCAGCACAAGCACTTGTGTCTTCTTCACTTACCT 179 Query 175 CCTCTGTTCAGACAGCTAGACAGATATTTGGCTCAAAACCAGTTGCTTCTGCGTCACAGA 234 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 180 CCTCTGTTCAGACAGCTAGACAGATATTTGGCTCAAAACCAGTTGCGTCTGCCTCACAGA 239 Query 235 GGAAGAGTTCCTTTGTTGTTAAGGCTACAGCAACTCCACCTGTCAAGCAAGGAGCAAACA 294 ||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||| Sbjct 240 AGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGCAAGGAGCCAACA 299 Query 295 GACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTACTTGGATGGCAGCTTACCTGGTG 354 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTACTTGGATGGCAGCTTACCTGGTG 359 Query 355 ACTATGGATTTGACCCACTTGGTCTTTCAGACCCAGAAGGTACTGGAGGGTTCATTGAGC 414 |||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 360 ACTATGGATTCGACCCTCTTGGTCTTTCAGACCCAGAAGGTACTGGAGGATTCATTGAGC 419 Query 415 CGAGATGGCTAGCATACGGAGAGATCTTCAACGGACGGTTCGCCATGTTGGGTGCAGTTG 474 | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 420 CAAGATGGCTAGCATACGGAGAGATCATCAACGGACGGTTCGCCATGTTGGGTGCAGCTG 479 Query 475 GAGCTATTGCTCCTGAGATTCTAGGAAAGGCTGGTCTGATTCCACCAGAGACTGCTCTTC 534 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 480 GAGCTATTGCTCCTGAGATTTTAGGAAAGGCTGGTCTGATTCCAGCAGAGACTGCTCTTC 539 Query 535 CTTGGTTCCAAACCGGTGTGATTCCACCAGCAGGGACATACACTTACTGGGCAGACAATT 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CTTGGTTCCAAACCGGTGTGATTCCACCAGCAGGGACATACACTTACTGGGCAGACAATT 599 Query 595 ACACACTCTTTGTTTTCGAGATGGCTCTGATGGGATTCGCTGAGCATCGGAGGTTACAGG 654 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 600 ACACACTCTTTGTTCTCGAGATGGCTCTGATGGGATTCGCTGAGCACCGGAGGTTACAGG 659 Query 655 ACTGGTACAACCCAGGATCTATGGGAAAGCAGTACTTCTTGGGGTTAGAAAAGGGTTTGG 714 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 660 ACTGGTACAACCCAGGATCTATGGGAAAACAGTACTTCTTGGGGTTAGAGAAGGGTTTGG 719 Query 715 CTGGTTCAGGTGACCCAGCTTACCCTGGTGGACCTTTCTTCAACCCTCTAGGGTTTGGGA 774 | ||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 720 CCGGTTCAGGTAACCCGGCTTACCCCGGTGGACCTTTCTTCAACCCTCTTGGGTTTGGGA 779 Query 775 AAGATGAGAAGTC-CTTGAAGGAGTTGAAACTCAAGGAGGTCAAGAACGGTAGACTGGCT 833 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 AAGATGAGAAGTCACT-GAAGGAGTTGAAACTCAAGGAGGTCAAGAACGGTAGACTGGCT 838 Query 834 ATGCTCGCCATCCTCGGTTACTTTATCCAGGGACTAGTGACCGGTGTGGGACCTT-TCCA 892 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | Sbjct 839 ATGCTCGCCATCCTCGGTTACTTTATCCAAGGACTAGTGACCGGTGTGGGACCTTATC-A 897 Query 893 GAACCTGCTTGATCACTTGGCTGATCCCATCAACAACAACGTCTTGACCAGCCTCAAGTT 952 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 898 GAACCTGCTTGATCACTTGGCTGATCCCGTCAACAACAACGTCTTGACCAGCCTCAAGTT 957 Query 953 CCACTGAGGTGATCATCATC-CTATGTGTTTT-ATGTCTCTTGTATCGTACAAATCTTTC 1010 |||||||||||||||||||| | ||||||||| |||||||||||||||||||| | |||| Sbjct 958 CCACTGAGGTGATCATCATCTC-ATGTGTTTTTATGTCTCTTGTATCGTACAA-TATTTC 1015 Query 1011 TATCTTTCGCTACCATTGGCTTCTTCGTATTGTAACAGCCTGTGTAAACATATTCGTGTT 1070 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1016 CATCTTTCGCTACCATTGGCTTCTTCGTATTGTAACACCCTGTGTAAACATATTCGTGTT 1075 Query 1071 TTGTAAGAAATGACAATGTCAATGGCCAAACGAAAAA-CTTTTAGGATTAACAGTTGGTA 1129 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1076 TTGTAAGAAATGACAATGTCAATGGCCAAACGAAAAAACTTTTAGGATTAACAGTTGGCA 1135 Query 1130 TTTGCAA 1136 ||||||| Sbjct 1136 TTTGCAA 1142 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55722604950 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5