BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475195 Length=1256 Score E Sequences producing significant alignments: (Bits) Value AT1G61250.1 | Symbols: SC3 | secretory carrier 3 | chr1:2258589... 1938 0.0 AT1G11180.2 | Symbols: | Secretory carrier membrane protein (S... 793 0.0 > AT1G61250.1 | Symbols: SC3 | secretory carrier 3 | chr1:22585899-22588905 FORWARD LENGTH=1247 Length=1247 Score = 1938 bits (1049), Expect = 0.0 Identities = 1193/1259 (95%), Gaps = 24/1259 (2%) Strand=Plus/Plus Query 3 CTTGTCTTCAACGTTCGGCTTAATCCTTGGTCCGTGTTCAAGATCTTAGATCGATTTCTA 62 ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| Sbjct 8 CTTGTCTTCAACGTTCGGC-TAATCCTTGGTCCGTGCT-AAGATCTTAGATCGATTTCTA 65 Query 63 AAGTCTTCTTCTCCGTCTTCGTCTGCTGATAACTAGCTTCTTGAATCTTCTGAAGCTTTA 122 |||||||| ||| ||||| ||| |||||||||||||| || ||||||||||||||||| Sbjct 66 AAGTCTTCGTCT---TCTTCTTCTTCTGATAACTAGCTTTTTCAATCTTCTGAAGCTTTA 122 Query 123 A-TTTTTCATAGCCATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAG 181 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 ATTTTTTCATACCCATGGCTAATCGTTATGATCCAAATCCTTTCGCTGAGGAAGAAGAAG 182 Query 182 TCAATCCTTTCGCTAATCCTAAAGGTGTTCCGCCTGCGTCGAATTCGAGACTTTCGCCTT 241 ||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||| Sbjct 183 TCAATCCTTTCGCTAATGCTAGAGGAGTTCCACCTGCGTCGAATTCGAGACTTTCGCCTT 242 Query 242 TACCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTGGACATTCCTCTTGAGAGAC 301 | |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 243 TGCCTCCAGAGCCTGTTGGTTTCGATTATGGTCGAACCGTAGACATTCCTCTTGACAGAG 302 Query 302 CTGGTGGACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 361 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 CTGGTACACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAA 362 Query 362 AACGACGAGAGCAGGAACTCAAACGAAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 421 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 363 AACGACGAGAGCAGGACCTCAAACGGAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTA 422 Query 422 TCGAAGTGAAAAACTGGCCGCCTTTCTTCCCGCTTATCCACCATGACATCGCAAACGAAA 481 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 423 TTGAAGTGAAAAACTGGCCGCCTTTCTTCCCACTTATCCACCATGACATCGCAAACGAAA 482 Query 482 TTCCAGTTCATCTCCAAAGACTACAGTATGTTACCTTCGCAACGTATTTGGGTTTGGTTC 541 |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 483 TTCCGGTTCATCTCCAAAGACTACAGTATGTTACCTTTGCAACGTATTTGGGGTTGGTTC 542 Query 542 TTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 TTTGTCTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGA 602 Query 602 CGATATGGCTTCTTGCCTTAATTTACTTCATAGCTGGTGTTCCAGGAGGCTATGTGTTAT 661 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 603 CGATATGGCTTCTTGCCTTAATTTACTTCATAGCGGGTGTTCCAGGAGGCTATGTGTTAT 662 Query 662 GGTATCGGCCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTT 721 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 GGTATCGACCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTT 722 Query 722 TCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCG 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 TCTTGTTCTATATGCTCCACATTGCTTTCTGCGTCTTTGCTGCAGTTGCTCCACCTGTCG 782 Query 782 TCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGCGGTCAAG 841 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 783 TCTTCAAAGGAAAATCTCTTGCTGGGATCTTACCTGCAATAGATGTCTTAAGTGGTCAAG 842 Query 842 CAATTGTTGGGATATTCTACTTCATTGGGTTTGCGTTTTTCTGCCTCGAATCAGTGGTTA 901 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 843 CAATTGTTGGGATATTCTACTTCATTGGGTTTGCATTTTTCTGCCTCGAATCAGTGGTTA 902 Query 902 GCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAA 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 GCATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAACAAGATCAAA 962 Query 962 TGAGACGGGAAGCGGCAAGAGGAGCCTTGAGAGCCGCTGTTTGAGAGGTT-TCGTTGTAA 1020 ||||||||||||| || |||||||||||||||||||||||||||||| || || |||||| Sbjct 963 TGAGACGGGAAGCAGCGAGAGGAGCCTTGAGAGCCGCTGTTTGAGAG-TTCTCCTTGTAA 1021 Query 1021 CATTCTGGTTTGTGTATGCAAtctttactgtttctttcttttttctgattttctt-aagt 1079 |||||||||||||||||||| || |||||||| ||| | ||||||||| |||| Sbjct 1022 CATTCTGGTTTGTGTATGCA--CT-----GTTTCTTT-TTT---CAGATTTTCTTGAAGT 1070 Query 1080 ctctctctctctctctctctccctctctgctctATAAGCACaaaaaaaaTTATTCAATTT 1139 ||||||||||||||||||||| |||||||||||||| || |||||||| ||| ||||| Sbjct 1071 CTCTCTCTCTCTCTCTCTCTC--TCTCTGCTCTATAAACAAAAAAAAAAAGATTTAATTT 1128 Query 1140 TTCCTTTGTACCTTTATGTCATGTAAATTTGTTTGTTCAAAAATCAGAGTTCAGATTCAT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129 TTCCTTTGTACCTTTATGTCATGTAAATTTGTTTGTTCAAAAATCAGAGTTCAGATTCAT 1188 Query 1200 ACGTATTTCGAAACCATTCAA-AATTGTTAGTTTTTT-ATAAGAACTCATCTTACATCC 1256 |||||||| |||| |||||| |||| ||| |||||| ||||||||||||||||||||| Sbjct 1189 ACGTATTTTGAAATCATTCATGAATTTTTACTTTTTTTATAAGAACTCATCTTACATCC 1247 > AT1G11180.2 | Symbols: | Secretory carrier membrane protein (SCAMP) family protein | chr1:3745783-3748500 FORWARD LENGTH=1154 Length=1154 Score = 793 bits (429), Expect = 0.0 Identities = 608/694 (88%), Gaps = 14/694 (2%) Strand=Plus/Plus Query 309 ACAGGATTTGAAGAAGAAAGAGAAGGAACTCCAAGCCAAAGAAGCTGAGCTAAAACGACG 368 |||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||| Sbjct 265 ACAGGATTTGAAAAAGAAAGAGAAGGAGCTCCAAGCCAAAGAAGCTGACCTAAGACGACG 324 Query 369 AGAGCAGGAACTCAAACGAAAAGAAGATGCTGCTGCACGAGCTGGAATCGTTATCGAAGT 428 |||||| || || ||||||||| | ||||||||||| ||||| ||||| |||||||| | Sbjct 325 AGAGCAAGATCTTAAACGAAAACAGGATGCTGCTGCCCGAGCCGGAATTGTTATCGAGGC 384 Query 429 GAAAAACTGGCC-GCCTTTCTTCCCGCTTATCCACCATGACATCGCAAACGAAATTCCAG 487 ||||||||||| || |||||||| ||||||||||||||||| ||||| ||||||| | Sbjct 385 AAAAAACTGGCCTACC-TTCTTCCCCCTTATCCACCATGACATTGCAAATGAAATTCTGG 443 Query 488 TTCATCTCCAAAGACTACAGTATGTTACCTTCGCAACGTATTTGGGTTTGGTTCTTTG-T 546 ||| ||||||||| ||||||||| || | || ||||| |||||||| ||||||| | | Sbjct 444 TTCGTCTCCAAAGGCTACAGTATATTGCATTTGCAACATATTTGGGGTTGGTTC-TCGCA 502 Query 547 CTTTTCTGGAATATCATCGCCGTTACTACAGCTTGGATCAAAGGAGAAGGAGTGACGATA 606 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || Sbjct 503 CTTTTCTGGAATATCATCGCCGTTACTACCGCTTGGATCAAAGGAGAAGGAGTAACAATT 562 Query 607 TGGCTTCTTGCC-TTAATTTACTTCATAGCTGGTGTTCCAGGAGGCTATGTGTTATGGTA 665 |||||||| ||| ||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct 563 TGGCTTCTCGCCGTTA-TTTACTTCATATCGGGTGTTCCAGGAGGCTATGTGTTATGGTA 621 Query 666 TCGGCCACTCTACCGTGCCTTCAGAACTGATAGTGCATTGAGCTTTGGATGGTTTTTCTT 725 |||||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||| Sbjct 622 TCGGCCTCTCTACCGTGCCTTCAGAAGTGATAGTGCATTCAACTTTGGATGGTTTTTCTT 681 Query 726 GTTCTATATGCTCCACATTGCTTT-CTGCGTCTTTGCTGCAGTTGCTCCACCTGTCGTCT 784 |||||| ||||||||||| |||| |||| ||||||||||||||||||| ||| | |||| Sbjct 682 GTTCTACATGCTCCACATA-CTTTTCTGCCTCTTTGCTGCAGTTGCTCCTCCTATTGTCT 740 Query 785 TCAAAGGAAAATCTCTTGCTGGG-ATCTTACCTGCAATAGATGTCTTAAGCGGTCAAGCA 843 ||||||||||||| ||||| ||| || ||||||||||||||||| || |||| ||| ||| Sbjct 741 TCAAAGGAAAATCACTTGC-GGGCATATTACCTGCAATAGATGTGTTGAGCGCTCAGGCA 799 Query 844 ATTGTT-GGGATATTCTACTTCATTGGGTTTGCGTTTTTCTGCCTCGAATCAGTGGTTAG 902 ||| | ||||| ||||||||||||||||||| ||| ||||| || |||||||||||||| Sbjct 800 -TTGGTCGGGATCTTCTACTTCATTGGGTTTGGGTTATTCTGTCTTGAATCAGTGGTTAG 858 Query 903 CATCTGGGTTATTCAGCAAGTGTATATGTACTTCCGAGGCAGCGGGAAA-CAAGATCAAA 961 |||||||||||| |||||||| || ||||||||| |||| ||||| ||| | ||| | | Sbjct 859 CATCTGGGTTATACAGCAAGTATACATGTACTTCAGAGGAAGCGGAAAAGCG-GATGATA 917 Query 962 TGAGACGGGAAGCGGCAAGAGGAGCCTTGAGAGC 995 |||||||||| || |||||||||||| ||||||| Sbjct 918 TGAGACGGGATGCTGCAAGAGGAGCCATGAGAGC 951 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61746670350 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5