BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475252 Length=2354 Score E Sequences producing significant alignments: (Bits) Value AT1G60800.1 | Symbols: NIK3 | NSP-interacting kinase 3 | chr1:2... 3297 0.0 > AT1G60800.1 | Symbols: NIK3 | NSP-interacting kinase 3 | chr1:22383453-22387457 REVERSE LENGTH=2573 Length=2573 Score = 3297 bits (1785), Expect = 0.0 Identities = 2221/2416 (92%), Gaps = 91/2416 (4%) Strand=Plus/Plus Query 1 TCTCTATCTCTTGTCACTGCTCGTTTAGCACTCATTCTCTTAAT-G---CTTCAGTCAAA 56 ||||||||||||||||| |||||||||||| ||||||||||||| | ||||| ||||| Sbjct 187 TCTCTATCTCTTGTCACAGCTCGTTTAGCATTCATTCTCTTAATCGTTTCTTCATTCAAA 246 Query 57 AATTCTCTCTTTCTAAGCTGAGTGTCTTGCAAGTCGTCATTTTTCAATTTGGGTCTTCTT 116 ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 247 AATTCTCTCTTTCTAAGCTGAGTAACTTGCAAGTCGTCATTTTTCAATTGGGGTCTTCTC 306 Query 117 C-TTTTACTCCAGTCAAGAATTTGATTCGAATTGAAATCAGATAGAAAAGAGACGTTCCA 175 | ||||||| || | || |||||||||||| | || ||||||| |||||| Sbjct 307 CTTTTTACT----TC------CT--TT-GAATTGAAATCACAGAG-AAAGAGAGGTTCCA 352 Query 176 TTGCTGG-AAA-GAGATTGCTCAAAGTGt-ttttttttGTCTGAATAAAGAC--AG-AGA 229 ||||||| ||| | ||||||||||| | | ||| | ||||| ||||||||| || ||| Sbjct 353 TTGCTGGAAAATG-GATTGCTCAAA-T-TAGTTTCTGTGTCTAAATAAAGACAGAGAAGA 409 Query 230 AG---A--AG----AA---AA----TTTTTTAAGATATGGGAGAGAGAAAAATGAGTTGG 273 || | || || || |||||| |||||||||||||||||||||||||||| Sbjct 410 AGAAAAGTAGACAAAAGCTAAGTTTTTTTTTCAGATATGGGAGAGAGAAAAATGAGTTGG 469 Query 274 TGGGTTTC-CTGAAACTTG-TTTT-TTCAGACCAAAGATGATTGCTTTAAGAAGGGATAT 330 |||| ||| ||||||||| |||| |||||||||||| |||||||||||||||||||||| Sbjct 470 TGGG-TTCTTTGAAACTTGTTTTTGTTCAGACCAAAGTTGATTGCTTTAAGAAGGGATAT 528 Query 331 GG-A--TG-GA-A-----AGTGT-AAGATTAGGGTTTCTGGTTTTGGTATTGTTGC-TTG 378 || | || || | |||| |||||||| ||||||||||| |||| ||| | ||| Sbjct 529 GGAAGGTGTGAGATTTGTGGTGTGGAGATTAGGATTTCTGGTTTTTGTATGGTT-CTTTG 587 Query 379 ATGTCTCTACTGCTACACTTTCTCCTACTGGTGTAAACTATGAAGTGACGGCTTTAGTGG 438 || ||||| |||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 588 ATATCTCTTCTGCTACACTTTCTCCTACTGGTGTAAACTATGAAGTGACAGCTTTGGTTG 647 Query 439 CTGTGAAGAATGAATTGAATGATCCGTACAATGTTCTTGAGAATTGGGATGTGAATTCAG 498 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 648 CTGTGAAGAATGAATTGAATGATCCGTACAAAGTTCTTGAGAATTGGGATGTGAATTCAG 707 Query 499 TTGATCCTTGTAGCTGGAGAATGGTTACTTGCACTGATGGCTATGTCTCTGGATTGGTA- 557 |||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| | Sbjct 708 TTGATCCTTGTAGCTGGAGAATGGTTTCTTGCACTGATGGCTATGTCTCTTCACTGG-AT 766 Query 558 CTTCCTAGCCAAAGCTTGTCTGGTACATTGTCTCCTAGAATCGGAAACCTCACCTATCTA 617 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 767 CTTCCTAGCCAAAGCTTGTCTGGTACATTGTCTCCTAGAATCGGAAACCTCACCTATTTA 826 Query 618 GAATCTGTGTTGTTGCAAAACAATGCAATCACTGGTCCAATTCCCGAAACGATTGGGAGG 677 |||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 827 CAATCAGTGGTGTTGCAAAACAATGCAATCACTGGTCCAATTCCGGAAACGATTGGGAGG 886 Query 678 TTGGAGAAGCTTCAGACACTTGATCTTTCGAACAATTCATTCACCGGGGAGATACCGGCC 737 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 887 TTGGAGAAGCTTCAGTCACTTGATCTTTCGAACAATTCATTCACCGGGGAGATACCGGCC 946 Query 738 TCACTTGGAGAACTCAAGAACTTGAATTACTTGCGGTTAAACAATAACAGTCTTTTAGGA 797 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 947 TCACTTGGAGAACTCAAGAACTTGAATTACTTGCGGTTAAACAATAACAGTCTTATAGGA 1006 Query 798 ACTTGCCCTGAGTCTCTATCCAAGATTGAGGGACTCACTCTAGTCGACATTTCGTATAAC 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1007 ACTTGCCCTGAGTCTCTATCCAAGATTGAGGGACTCACTCTAGTCGACATTTCGTATAAC 1066 Query 858 AATCTTAGCGGTTCACTGCCAAAAGTTTCTGCCAGAACTTTCAAGGTAATTGGTAATGCA 917 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1067 AATCTTAGTGGTTCGCTGCCAAAAGTTTCTGCCAGAACTTTCAAGGTAATTGGTAATGCG 1126 Query 918 TTGATCTGTGGCCCAAAAGCTGTTTCAAACTGCTCTGCTGTCTTTCCCGAGCCGCTCACG 977 || ||||||||||||||||||||||||||||| |||||||| | |||||||| |||||| Sbjct 1127 TTAATCTGTGGCCCAAAAGCTGTTTCAAACTGTTCTGCTGT-T--CCCGAGCCTCTCACG 1183 Query 978 CTTCCACAAGATGGTCCACCAGATGAATCAGGAACTCGTACCAATGGCCATCACGTAGCT 1037 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 1184 CTTCCACAAGATGGTCCA---GATGAATCAGGAACTCGTACCAATGGCCATCACGTTGCT 1240 Query 1038 CTTGCATTCGCCGCAAGCTTCAGTGCAGCATTTTTTGTTTTCTTTACAAGCGGAATGTTT 1097 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1241 CTTGCATTTGCCGCAAGCTTCAGTGCAGCATTTTTTGTTTTCTTTACAAGCGGAATGTTT 1300 Query 1098 CTTTGGTGGAGATATCGGCGTAACAAGCAAATATTTTTTGACGTTAATGAACAATATGAT 1157 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 CTTTGGTGGAGATATCGCCGTAACAAGCAAATATTTTTTGACGTTAATGAACAATATGAT 1360 Query 1158 CCAGAAGTGAGTTTAGGGCACTTGAAGAGGTATACTTTCAAAGAGCTTAGATCTGCGACC 1217 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1361 CCAGAAGTGAGTTTAGGGCACTTGAAGAGGTATACATTCAAAGAGCTTAGATCTGCCACC 1420 Query 1218 AATCATTTCAACTCGAAAAACATTCTCGGAAGAGGCGGATACGGGATTGTGTACAAAGGA 1277 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1421 AATCATTTCAACTCGAAGAACATTCTCGGAAGAGGCGGATACGGGATTGTGTACAAAGGA 1480 Query 1278 CACTTAAGCGATGGAACTTTGGTGGCTGTCAAACGTCTCAAGGACTGTAACATTGCGGGC 1337 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1481 CACTTAAACGATGGAACTTTGGTGGCTGTCAAACGTCTCAAGGACTGTAACATTGCGGGT 1540 Query 1338 GGTGAAGTCCAATTCCAAACAGAAGTAGAGACTATAAGTTTGGCTCTTCATCGCAATCTC 1397 || |||||||| || || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1541 GGAGAAGTCCAGTTTCAGACAGAAGTAGAGACTATAAGTTTGGCTCTTCATCGCAATCTC 1600 Query 1398 CTCAGGCTCCGTGGTTTCTGTAGTAGCAACCAGGAGAGAATCTTAGTCTACCCTTACATG 1457 ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1601 CTCCGGCTCCGCGGTTTCTGTAGTAGCAACCAGGAGAGAATTTTAGTCTACCCTTACATG 1660 Query 1458 CCAAATGGGAGCGTCGCATCACGCTTGAAAGATAATATCCGGGGAGAGCCAGCATTAGAC 1517 ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1661 CCAAATGGGAGTGTCGCATCACGCTTAAAAGATAATATCCGTGGAGAGCCAGCATTAGAC 1720 Query 1518 TGGTCGAGAAGGAAGAAGATAGCGGTTGGGACAGCTAGAGGACTAGTGTACCTACACGAG 1577 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1721 TGGTCGAGAAGGAAGAAGATAGCGGTTGGGACAGCGAGAGGACTAGTTTACCTACACGAG 1780 Query 1578 CAATGTGACCCAAAGATCATACACCGCGATGTGAAAGCAGCTAACATTTTATTGGATGAG 1637 ||||||||||| ||||| |||||||||||||||||||||||||||||| | || |||||| Sbjct 1781 CAATGTGACCCGAAGATTATACACCGCGATGTGAAAGCAGCTAACATTCTGTTAGATGAG 1840 Query 1638 GACTTTGAGGCAGTTGTTGGTGATTTCGGGTTAGCTAAGCTTCTAGACCATAGAGACTCT 1697 ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1841 GACTTCGAAGCAGTTGTTGGTGATTTTGGGTTAGCTAAGCTTCTAGACCATAGAGACTCT 1900 Query 1698 CACGTCACAACTGCAGTCCGTGGAACCGTTGGCCACATTGCACCTGAGTACTTATCCACG 1757 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1901 CATGTCACAACTGCAGTCCGTGGAACTGTTGGCCACATTGCACCTGAGTACTTATCCACG 1960 Query 1758 GGTCAGTCCTCTGAGAAGACTGATGTCTTTGGCTTTGGTATACTTCTCCTTGAGCTCATC 1817 ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1961 GGTCAGTCCTCAGAGAAGACTGATGTCTTTGGCTTTGGCATACTTCTCCTTGAGCTCATT 2020 Query 1818 ACTGGTCAGAAAGCACTTGATTTTGGCCGATCCGCTCACCAAAAAGGCGTCATGCTTGAC 1877 |||||||||||||| |||||||||||| ||||||| ||||| ||||| || ||||||||| Sbjct 2021 ACTGGTCAGAAAGCTCTTGATTTTGGCAGATCCGCACACCAGAAAGGTGTAATGCTTGAC 2080 Query 1878 TGGGTGAAGAAGCTGCATCAAGAAGGGAAACTAAAGCAGTTGATAGACAAAGATCTAAAT 1937 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 2081 TGGGTGAAGAAGCTGCACCAAGAAGGGAAACTAAAGCAGTTAATAGACAAAGATCTAAAT 2140 Query 1938 GACAAGTTCGATAGAGTAGAACTCGAAGAAATCGTTCAAGTTGCGCTTCTCTGCACTCAA 1997 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2141 GACAAGTTCGATAGAGTAGAACTCGAAGAAATCGTTCAAGTTGCGCTACTCTGCACTCAA 2200 Query 1998 TTCAATCCATCTCATCGACCCAAAATGTCAGAAGTTATGAAAATGCTTGAAGGTGACGGC 2057 |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 2201 TTCAATCCATCTCATCGACCGAAAATGTCAGAAGTTATGAAGATGCTTGAAGGTGACGGT 2260 Query 2058 TTGGCTGAGAGATGGGAAGCGACGCAGAACGGTACTGCG-GAGAATCAGCCACCGCCATT 2116 ||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| Sbjct 2261 TTGGCTGAGAGATGGGAAGCGACGCAGAACGGTACTG-GTGAGCATCAGCCACCGCCATT 2319 Query 2117 GCCACCGGGGATGGTGAGTTCATCGCCGCGTGTAAGGTATTACTCCGATTATATCCAGGA 2176 ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| Sbjct 2320 GCCACCGGGGATGGTGAGTTCTTCGCCGCGTGTGAGGTATTACTCGGATTATATTCAGGA 2379 Query 2177 ATCGTCTCTTGTAGTAGAAGCCATTGAGCTCTCGGGTCCACGATGATTGTGATTCACt-t 2235 ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| | Sbjct 2380 ATCGTCTCTTGTAGTAGAAGCCATTGAGCTCTCGGGTCCTCGATGATTATGACTCACTGT 2439 Query 2236 tt-----------cttttattgtgtttgttttttgtttgtctttttATAATGTTGATATA 2284 || ||||| ||| ||||||||||| |||||| |||||||||||||||||| Sbjct 2440 TTTTAAAAAATTTCTTTTCTTGGGTTTGTTTTTTATTTGTCGTTTTATAATGTTGATATA 2499 Query 2285 GATGTGAAGTTGAGTGT--AATTTTTTATGTaaa-aaaa--TACT-AAATGCGAAAGAAA 2338 ||||||||||||||||| ||||||| ||||||| |||| || | |||||| ||||||| Sbjct 2500 GATGTGAAGTTGAGTGTGTAATTTTT-ATGTAAAGAAAAAATA-TGAAATGCAAAAGAAA 2557 Query 2339 ATGTTGATTAGCCTGC 2354 |||||||||||||||| Sbjct 2558 ATGTTGATTAGCCTGC 2573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116866868760 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5