BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475277
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60550.1 | Symbols: ECHID, DHNS | enoyl-CoA hydratase/isomer... 1868 0.0
> AT1G60550.1 | Symbols: ECHID, DHNS | enoyl-CoA hydratase/isomerase
D | chr1:22305831-22308229 REVERSE LENGTH=1308
Length=1308
Score = 1868 bits (1011), Expect = 0.0
Identities = 1149/1215 (95%), Gaps = 11/1215 (1%)
Strand=Plus/Plus
Query 1 TTTTTTCAATTAAAAAATGTATTATCATCACCATTGTCAAAGTCCATGCTCTAGAATCTT 60
||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 34 TTTTTTCAATTGAAAAATGTATTATCACCACCATTGTCAAAGCCCATGCTCTAGAATCTT 93
Query 61 TGGTCGTTTTTATCATCTTTCTCTGTCTCTCGTCGA-CCTATCCAATGGCGGATTCCAAG 119
|||| || || ||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 94 TGGTAGTCTTCATCATCTTTCTCTATCTCTCGTC-ATCCTATCCAATGGCGGATTCCAAT 152
Query 120 GAGCTTGGCTCGGCGAGCCGGCGAATCTCCGTCGTCACCAACCATCTCATCCCTATTGGA 179
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||
Sbjct 153 GAGCTTGGCTCGGCGAGCCGACGACTCTCCGTCGTCACCAATCATCTCATCCCTATCGGA 212
Query 180 TTCAATCCAACTCGTGTTGACTCAGTGGAACTCTGTAGTGCTTCGTCGATGGATGATAGT 239
|||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 TTCAGTCCAGCTCGTGCTGACTCAGTGGAACTCTGTAGTGCTTCGTCGATGGATGATAGA 272
Query 240 TTCCATAAGGTTCACGGTGAAGTTCCGACCCACGAAGTCGTTTGGAAAAAAGCTGAGTTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 273 TTCCATAAGGTTCACGGTGAAGTTCCGACCCACGAAGTCGTTTGGAAAAAAACTGATTTC 332
Query 300 TTTGTTGACGGAGATAATAAGGAGTTTGTTGACATTATTTATGAGAAAGCCCTTGATGAA 359
|||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 333 TTTGGTGAAGGAGATAACAAGGAGTTTGTTGATATTATTTATGAGAAAGCCCTTGATGAA 392
Query 360 GGCATTGCAAAGATTACTATAAATCGGCCAGAGAGAAGAAATGCGTTCCGGCCTCAGACT 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 393 GGCATTGCAAAGATTACTATAAACCGGCCAGAGAGAAGAAATGCGTTCCGGCCTCAGACT 452
Query 420 GTGAAGGAGCTTATGCGTGCGTTTAATGATGCTAGAGATGACAGCTCTGTAGGAGTCATC 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 453 GTGAAGGAGCTTATGCGTGCGTTTAATGATGCTAGAGATGATAGCTCTGTAGGAGTCATC 512
Query 480 ATACTCACTGGCAAGGGAACAAAAGCATTTTGCAGTGGTGGTGATCAGGCGTTAAGAACA 539
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 513 ATACTCACCGGCAAGGGAACAAAAGCATTTTGCAGTGGTGGTGATCAGGCTTTGAGAACA 572
Query 540 CAAGACGGTTATGCTGATCCCAATGATGTTGGCCGCCTTAATGTTCTTGATCTTCAGATT 599
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 573 CAAGACGGGTATGCTGATCCCAATGACGTTGGCCGCCTTAATGTTCTTGATCTTCAGGTT 632
Query 600 CAAATCCGCAGATTGCCAAAGCCAGTTATCGCGATGGTTGCTGGTTATGCTGTTGGAGGG 659
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 633 CAAATCCGCAGATTGCCAAAGCCAGTTATTGCAATGGTAGCTGGTTATGCTGTTGGAGGA 692
Query 660 GGACATATCTTGCACATGGTCTGCGATCTAACAATTGCAGCTGATAATGCTATTTTTGGT 719
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 693 GGACACATTTTGCACATGGTCTGCGATCTAACAATTGCAGCTGATAATGCGATTTTTGGT 752
Query 720 CAAACGGGTCCTAAGGTTGGAAGTTTTGATGCTGGTTATGGAAGTTCCATCATGTCTCGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CAAACGGGTCCTAAGGTTGGAAGTTTTGATGCTGGTTATGGAAGTTCCATCATGTCTCGT 812
Query 780 CTGGTTGGTCCAAAAAAGGCACGAGAAATGTGGTTTATGACGAGGTTCTACACAGCTTCT 839
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CTGGTTGGTCCTAAAAAGGCACGAGAAATGTGGTTTATGACGAGGTTCTACACAGCTTCT 872
Query 840 GAAGCAGAGAAAATGGGACTTATCAATACAGTTGTACCGCTAGAG-ATGTTGGAGAAAGA 898
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 873 GAAGCAGAGAAAATGGGACTTATCAATACAGTTGTACCGCTAGAGGAT-TTGGAGAAAGA 931
Query 899 AACTGTGAAATGGTGCAGAGAAATCTTACGGAACAGTCCAACTGCAATCCGAGTGCTTAA 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 932 AACTGTGAAATGGTGCAGAGAAATCTTACGGAACAGTCCAACTGCAATCCGAGTACTTAA 991
Query 959 GGCAGCACTCAATGCTGTTGACGATGGCCATGCCGGACTTCAGGGACTCGGTGGCGATGC 1018
||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 992 GGCAGCACTTAATGCAGTTGATGATGGCCATGCCGGCCTTCAGGGACTCGGTGGTGATGC 1051
Query 1019 GACACTCTTATTCTATGGAACCGAAGAAGCTATTGAAGGAAGAACTGCTTATATGCAACG 1078
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||
Sbjct 1052 GACACTCTTATTCTATGGAACCGAAGAAGCTACTGAAGGGAGAACTGCTTATATGCACCG 1111
Query 1079 CCGACCACCGGACTTCTCTAAATTTCCCCGGCGACCTTAAACTCACTTCTAGCTCAGTTC 1138
|||||||||||||||||||||||||| ||||||||||||||| || ||||||||| ||||
Sbjct 1112 CCGACCACCGGACTTCTCTAAATTTCACCGGCGACCTTAAACACATTTCTAGCTCTGTTC 1171
Query 1139 AGGTGGTTTCATTACAGCATTTGT-CATCATTCCAATCCAAGTC-Cttttttcatttgtt 1196
||||| |||||||| ||||||||| | ||||||||||||||||| ||||||| ||| ||
Sbjct 1172 AGGTGTTTTCATTAGAGCATTTGTTC-TCATTCCAATCCAAGTCTCTTTTTTT-TTTCTT 1229
Query 1197 ttgttttgtttACCA 1211
|| |||| ||| |||
Sbjct 1230 TT-TTTT-TTT-CCA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5