BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475301
Length=1771
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleo... 2468 0.0
AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA process... 2139 0.0
AT5G51620.2 | Symbols: | Uncharacterised protein family (UPF01... 106 8e-22
> AT1G60170.1 | Symbols: emb1220 | pre-mRNA processing ribonucleoprotein
binding region-containing protein | chr1:22192773-22195400
FORWARD LENGTH=1819
Length=1819
Score = 2468 bits (1336), Expect = 0.0
Identities = 1584/1698 (93%), Gaps = 39/1698 (2%)
Strand=Plus/Plus
Query 96 ATGGCAACTCTTGAAGATTCTTTCCTTGCTGATCTT-GACGAGTTATCTGACAATGAAGC 154
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 139 ATGGCAACTCTTGAAGATTCTTTCCTTGCTGAT-TTGGACGAGTTATCTGACAATGAAGC 197
Query 155 AGAATTGGACGAGAACGATGGTGATGTTGGCAAGGAGGAAGAAGATGTTGACATGGATAT 214
||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 198 AGAATTGGACGAGAATGATGGTGATGTTGGAAAGGAAGAAGAAGATGTTGATATGGATAT 257
Query 215 GGCGGATTTAGAGACACTTAACTACGATGATCTCGATAGTGTTTCTAAGCTTCAGAAAAG 274
||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||
Sbjct 258 GGCTGATTTAGAGACACTTAACTATGATGATCTCGATAATGTTTCTAAGCTGCAGAAGAG 317
Query 275 TCAGAGATATACTGATATTATGCAAAAAGTAGAGGAGGCTCTT------G-----GAT-- 321
|||||||||| ||||||||||||| |||||||||||||||||| | |||
Sbjct 318 TCAGAGATATGCTGATATTATGCATAAAGTAGAGGAGGCTCTTGGGAAAGATTCTGATGG 377
Query 322 --CTGAGAAAGGAACTGTGTTGGAAGATGATCCTGAGTACAAGCTTATTGTGGATTGTAA 379
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 378 AGCTGAGAAAGGAACTGTCTTGGAAGATGATCCTGAGTATAAGCTTATTGTGGATTGTAA 437
Query 380 TCAGCTCTCTGTTGATATTGAGAATGAAATCGTTATTGTCCACAACTTTATCAAAGACAA 439
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TCAGCTTTCGGTCGATATTGAGAATGAAATCGTTATTGTCCACAACTTTATCAAAGACAA 497
Query 440 GTACAAGCTTAAGTTTCAAGAGCTTGAGTCGTTGGTTAATCACCCAATTGATTACGCCTG 499
||||||||||||||||||||||||||||||||||||| ||||||| ||||| || || ||
Sbjct 498 GTACAAGCTTAAGTTTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTATGCATG 557
Query 500 TGTTGTGAAAAAGATTGGCAATGAGACGGATTTGACTCTTGTTGATCTTGCTGACCTTCT 559
||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 558 TGTTGTGAAGAAGATTGGGAATGAGACGGATTTGGCTCTTGTTGATCTCGCTGACCTTCT 617
Query 560 TCCATCTGCTATTATCATGGTTATTTCAGTTACTGCTTCAACCACGAAAGGGAGCT-CAT 618
||| || ||||||||||||||| ||||||||||||||| ||| ||||||||||| | ||
Sbjct 618 TCCTTCAGCTATTATCATGGTTGTTTCAGTTACTGCTTTAACTACGAAAGGGAG-TGCAC 676
Query 619 TGCCAGAGGATGTCCTGCAAAAGGTGTTAGAGGCTTGTGACCGGGCTCTT-GATCTTGAT 677
||||||||||||| ||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 677 TGCCAGAGGATGTTTTGCAAAAGGTGTTAGAGGCTTGTGATCGGGCT-TTAGATCTTGAT 735
Query 678 TCTGCAAGGAAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGATCTATCGCACCTAAT 737
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 736 TCCGCAAGGAAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGATCTATTGCACCTAAT 795
Query 738 CTTTCCACCATTGTTGGGAGTGCTGTTGCAGCGAAGCTCATGGGGACTGCTGGAGGTTTG 797
||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 796 CTTTCTGCTATTGTTGGGAGTGCTGTTGCAGCCAAACTCATGGGGACTGCTGGAGGTTTG 855
Query 798 TCAGCACTTGCTAAAATGCCTGCCTGTAATGTTCAAGTTCTTGGCCTCAAGAGGAAGAAT 857
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 856 TCAGCACTTGCTAAAATGCCTGCGTGTAATGTTCAAGTTCTTGGCCACAAGAGGAAGAAC 915
Query 858 CTTGCTGGGTTCTCGTCTGCAACGTCACAGTCCCGTGTGGGTTATCTGGAGCAGACAGAG 917
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 916 CTTGCTGGGTTTTCTTCTGCAACGTCTCAGTCCCGTGTGGGTTATCTGGAGCAGACAGAG 975
Query 918 ATTTTTCAAAGCACGCCTCCTGGACTTCGGGCTCGCGCTAGCAGGCTCGTGGCTGCAAAA 977
|||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 976 ATTTACCAAAGCACGCCTCCTGGACTTCAGGCTCGCGCTGGCAGGCTCGTGGCTGCAAAA 1035
Query 978 TCGACTTTGGCAGCAAGAGTTGATGCTACTAGAGGGGACCCGACAGGGACAAGTGGAAAA 1037
|| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1036 TCAACTTTGGCAGCAAGAGTTGATGCTACTAGAGGGGATCCGTTAGGGATAAGTGGAAAA 1095
Query 1038 GCTTTCAGGGAGGAGATCCGTAAGAAGATTGAGAAGTGGCAAGAACCTCCTCCTGCAAGG 1097
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1096 GCTTTCAGGGAGGAGATCCGTAAGAAGATTGAGAAATGGCAAGAACCTCCTCCTGCAAGA 1155
Query 1098 CAGCCTAAGCCGCTTCCTGTTCCTGATTCTGAGCCGAAGAAAAGAAGGGGTGGTCGCCGT 1157
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1156 CAGCCTAAGCCACTTCCTGTTCCTGATTCTGAACCGAAGAAAAGAAGGGGTGGTCGCCGT 1215
Query 1158 CTAAGAAAAATGAAAGAAAGGTATGCA-GTAACAGACATGAGGAAGCTGGCCAACAGGAT 1216
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||
Sbjct 1216 CTAAGAAAAATGAAAGAAAGGTAT-CAAGTAACAGATATGAGGAAGCTGGCCAACAGAAT 1274
Query 1217 GGCGTTTGGTACACCTGAAGAGAGCTCCCTAGGTGATGGACTAGGAGAAGGTTATGGAAT 1276
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1275 GGCGTTTGGTACACCTGAAGAGAGCTCCCTCGGTGATGGACTAGGAGAAGGTTATGGAAT 1334
Query 1277 GCTTGGCCAGGCAGGTAGCAACAGGCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAAAAT 1336
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1335 GCTTGGCCAGGCAGGAAGCAACAGGCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAAGAT 1394
Query 1337 TAATGCTAAGGTCGCGAAAAAGCTTAAAGAAAGGCAGTATGCAGGTGGTGCGACTACCTC 1396
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1395 TAATGCTAAGGTCGCCAAAAAGCTTAAAGAAAGGCAGTATGCGGGTGGTGCGACTACCTC 1454
Query 1397 TGGTTTGACATCGAGCCTGGCTTTCACTCCTGTGCAGGGAATAGAGTTGTGCAATCCTCA 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 TGGTTTGACATCGAGCCTGGCTTTCACTCCTGTGCAGGGAATAGAGTTGTGCAATCCTCA 1514
Query 1457 GCAAGCTTTAGGATTAGGCAGTGGGACTCAAAGCACTTACTTCTCAGAGTCAGGAACCTT 1516
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GCAGGCTTTAGGATTAGGAAGTGGGACTCAAAGCACTTACTTCTCAGAGTCAGGAACCTT 1574
Query 1517 CTCGAAGCTGAAGAAGATCTAAAATATGCAAGACAGAGATACAAGCTGTTGAAAAGCCGA 1576
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||
Sbjct 1575 CTCGAAGCTGAAGAAGATCTAAAATATGGAAGACAGAGATACAAG-TCTTGAAAAGCCGA 1633
Query 1577 GCACTAGAAGATAATGGTGTATAAATGAAACAAAGGTGGAAAGAAACTGCTTTCTCTATC 1636
|||||| || | | |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1634 GCACTA-AA-A----G-TGTAAAAATGAAACAAAGGTGGAAAGAAACTGCTTTCTCTATC 1686
Query 1637 TC--GTCTGTTTTAAGGTTTCTTTCG-TCACTAAAGAGACAAAAGGCATTGTTTTGATCA 1693
|| ||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1687 TCATGTCTGTTTTAAGGTTTCTT-CGGTCACTTAAGAGACAAAAGGCATTGTTTTGATCA 1745
Query 1694 CTCTTTGGAAACGTTTTATAAATTTTATTTTTGTACTAGAGCCATACATACCTAAAGATC 1753
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 1746 CTCTTTGGAAACGTTTTATAAATTTTATTTTTGTATTAGAGCCATAC---C-TAAAGATC 1801
Query 1754 CATCTTCTTATCACCATC 1771
||||||||||| ||||||
Sbjct 1802 CATCTTCTTATTACCATC 1819
Score = 145 bits (78), Expect = 2e-33
Identities = 92/98 (94%), Gaps = 3/98 (3%)
Strand=Plus/Plus
Query 1 ATTCCTCTTCGCCTTCCAAAGG--AAAACACTAGTCGCTCGCTGCTCTTCAATTT-CTTC 57
||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATTCCTCTTCGCCTTCCTAAGGAAAAAACACTAGTCGCTCGCTGCTCTTCAATTTTCTTC 60
Query 58 TCGAATCTGGTCGATTGATTTCTCCTTCGATTCTTCAG 95
|||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCGAATCTAATCGATTGATTTCTCCTTCGATTCTTCAG 98
> AT3G60610.1 | Symbols: | pseudogene, putative pre-mRNA processing
ribonucleoprotein, similar to U4/U6 snRNP-associated 61
kDa protein (Homo sapiens) GI:18249847; contains Pfam profile
PF01798: Putative snoRNA binding domain; blastp match of
63% identity and 1.9e-143 P-value to GP|24059931|dbj|BAC21394.1||AP004010
putative U4/U6 snRNP-associated 61 kDa protein
{Oryza sativa (japonica cultivar-group)} | chr3:22403237-22405048
REVERSE LENGTH=1812
Length=1812
Score = 2139 bits (1158), Expect = 0.0
Identities = 1482/1629 (91%), Gaps = 59/1629 (4%)
Strand=Plus/Plus
Query 96 ATGGCAACTCTTGAAGATTCTTTCCTTGCTGATCTTGACGAGTTATCTGACAATGAAGCA 155
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 188 ATGGCAACTCTTGAAGATTCTTTCCTTGCTGACCTTGACGAGTTATCTGAGAATGAAGCA 247
Query 156 GAATTGGACGAGAA-CGATGGTGATGTTGGCAAGGAGGAAGAAGATGTTGACATGGATAT 214
|||||||||||||| | ||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 248 GAATTGGACGAGAATC-ATGGTGATGTTGGAAAGGAGGAAGAAGATGTGGATATGGATAT 306
Query 215 GGCGGATTTAGAGACACTTAACTACGATGATCTCGATAGTGTTTCTAAGCTTCAGAAAAG 274
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 307 GGCGGATTTAGAGACACTTAACTATGATGATCTCGATAGTGTTTCTAAGCTTCAGAAGAC 366
Query 275 TCAGAGATAT-ACTGATATTATGCAAAAAGTAGAGGAGGCTCTTGGATCTGAGAAAGGAA 333
|||||||||| | |||||||||||| |||||||||||||||||| | | |||| | |
Sbjct 367 TCAGAGATATGA-TGATATTATGCACAAAGTAGAGGAGGCTCTT-G----G-GAAA-G-A 417
Query 334 CTGTGTTGGAAGATGATCCTGAGTACAAGCTTATTGTGGATTGTAATCAGCTCTCTGTTG 393
| | | ||||||| |||||| ||||||||||||||||||||| |||| || ||||
Sbjct 418 -T-T-CT----GATGATCATGAGTATAAGCTTATTGTGGATTGTAATAAGCTTTCGGTTG 470
Query 394 ATATTGAGAATGAAATCGTTATTGTCCACAACTTTATCAAAGACAAGTACAAGCTTAAGT 453
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 471 ATATTGAGGATGAAATCGTTATTGTCCACAACTTTATCAAAGAAAAGTACAAGCTTAGGT 530
Query 454 TTCAAGAGCTTGAGTCGTTGGTTAATCACCCAATTGATTACGCCTGTGTTGTGAAAAAGA 513
||||||||||||||||||||||| ||||||| ||||| || || |||||||| || ||||
Sbjct 531 TTCAAGAGCTTGAGTCGTTGGTTCATCACCCTATTGACTATGCATGTGTTGTCAAGAAGA 590
Query 514 TTGGCAATGAGACGGATTTGACTCTTGTTGATCTTGCTGACC-T--TCTTCCAT-CTGCT 569
|||||||||||||||||||||||||||||||| |||||| || | |||| | | | |||
Sbjct 591 TTGGCAATGAGACGGATTTGACTCTTGTTGATTTTGCTGGCCTTGATCTTAC-TCCAGCT 649
Query 570 ATTATCATGGTTATTTCAGTTACTGCTTCAACCACGAAAGGGAGCT-CATTGCCAGAGGA 628
|||||||||| ||||||||||||||||||||| ||||||||||| | || ||||||||||
Sbjct 650 ATTATCATGGCTATTTCAGTTACTGCTTCAACTACGAAAGGGAG-TGCACTGCCAGAGGA 708
Query 629 TGTCCT-GCAAAAGGTGTTAGAGGCTTGTGACCGGGCTCTT-GATCTTGATTCTGCAAGG 686
||| | |||||||||||||||||||||||| |||| | || ||||||||||| |||||
Sbjct 709 TGT-TTAGCAAAAGGTGTTAGAGGCTTGTGATCGGGAT-TTAGATCTTGATTCCGCAAGA 766
Query 687 AAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGATCTATCGCACCTAATCTTTCCACC 746
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| ||
Sbjct 767 AAGAAGGTCCTTGAGTTTGTTGAAAGTAAGATGGGTTCTATTGCTCCTAATCTTTCCGCC 826
Query 747 ATTGTTGGGAGTGCTGTTGCAGCGAAGCTCATGGGGACTGCTGGAGGTTTGTCAGCACTT 806
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 827 ATTGTTGGGAGTGCTGTTGCAGCCAAACTCATGGGGACAGCTGGAGGTTTGTCAGCACTT 886
Query 807 GCTAAAATGCCTGCCTGTAATGTTCAAGTTCTTGGCCTCAAGAGGAAGAATCTTGCTGGG 866
||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct 887 GCTAAAATGCCTGCCTGTAATGTTCAAGTTCTTGGCCACAAGAGGAAGAACCTTGTTGGG 946
Query 867 TTCTCGTCTGCAACGTCACAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTTTCAA 926
|| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 947 TTTTCTTCTGCAACGTCTCAGTCCCGTGTGGGTTATCTGGAGCAGACAGAGATTTTCCAA 1006
Query 927 AGCACGCCTCCTGGACTTCG-GGCTCGCGCTAGCAGGCTCGTGGCTGCAAAATCGACTTT 985
|||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||||
Sbjct 1007 AGCACGCCTCCTGGACTT-GAGGCTCGCGCTGGCAGGCTCGTGGCTGCAAAATCAACTTT 1065
Query 986 GGCAGCAAGAGTTGATGCTACTAGAGGGGACCCGACAGGGACAAGTGGAAAAGCTTTCAG 1045
|||||| ||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||
Sbjct 1066 GGCAGCTAGAGTTGATGCTACTAGAGAGGATCCGTTAGGGATAAGTGGAAAAGCTTTCAG 1125
Query 1046 GGAGGAGATCCGTAAGAAGATTGAGAAGTGGCAAGAACCTCCTCCTGCAAGGCAGCCTAA 1105
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1126 GGAGGAGATCCGTAAGAAGATTGACAAGTGGCAAGAACCTCCTCCTGCAAGGCAGCCTAA 1185
Query 1106 GCCGCTTCCTGTTCCTGATTCTGAGCCGAAGAAAAGAAGGGGTGGTCGCCGTCTAAGAAA 1165
||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GCCACTTCCTATTCCTCATTCTGAGCCGAAGAAAAGAAGGGGTGGTCGCCGTCTAAGAAA 1245
Query 1166 AATGAAAGAAAGGTATGC-AGTAACAGACATGAGGAAGCTGGCCAACAGGATGGCGTTTG 1224
| |||||| ||||||| | ||||||||| |||||||||||||||||||||| ||| ||||
Sbjct 1246 ACTGAAAGCAAGGTAT-CAAGTAACAGATATGAGGAAGCTGGCCAACAGGACGGCCTTTG 1304
Query 1225 GTACACCTGAAGAGAGCTCCCTAGGTGATGGACTAGGAGAAGGTTATGGAATGCTTGGCC 1284
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1305 GTACACCTGAAGAGAGCTCCCTCGGTGATGGACTAGGAGAAGGTTATGGAATGCTTGGAC 1364
Query 1285 AGGCAGGTAGCAACAGGCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAAAATTAATGCTA 1344
||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1365 AGGCAGGAAGCAAGAGGCTGCGAGTATCCAGTGTTCAGAGCAAGCTTAAAATTAATGCCA 1424
Query 1345 AGGTCGCGAAAAAGCTTAAAGAAAGGCAGTATGCAGGTGGTGCGACTACCTCTGGTTTGA 1404
||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1425 AGGTCGCCAAAAAGCTTAAAGAAAGGCAGTATGCGGGTGGTGCAACTACCTCTGGTTTGA 1484
Query 1405 CATCGAGCCTGGCTTTCACTCCTGTGCAGGGAATAGAGTTGTGCAATCCTCAGCAAGCTT 1464
|||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1485 CATCAAGCTTGGCTTTCACTTCTATGCAGGGAATAGAGTTGTGCAATCCTCAGCAAGCTT 1544
Query 1465 TAGGATTAGGCAGTGGGACTCAAAGCACTTACTTCTCAGAGTCAGGAACCTTCTCGAAGC 1524
|||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 1545 TAGGATTAGGAAGTGGGGCTCAAAG--C--ACTTCTCAGAGTCAGGAACCTTCTCGAAGC 1600
Query 1525 TGAAGAAGATCTAAAATATGCAAGACAGAGATACAAGCT-----GT-T-GAAAAGCCGAG 1577
||||||||||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 1601 TGAAGAAGATCTAAAATATGCAAGACAGAGATACAAGCTTACAAGTGTTGAAAAGCCGAG 1660
Query 1578 CACTAGAAGATAATGGTGTATAAATGAAACAAAGGTGGAAAGAAACTGCTTTCTCTATCT 1637
|| || || | | |||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1661 CAATA-AA-A----G-TGTAAAAATGATACAAAGGTGGAAAGAAACTGCTTTCTCTATCT 1713
Query 1638 C--GTCTGTTTTAAGGTTTCTTTCG-TCACTAAAGAGACAAAAGGCATTGTTT-T--GAT 1691
| ||||||||||||||||||| || |||||||||||||||||| |||||||| | |||
Sbjct 1714 CATGTCTGTTTTAAGGTTTCTT-CGGTCACTAAAGAGACAAAAGACATTGTTTGTTTGAT 1772
Query 1692 CACTCTTTG 1700
|| ||||||
Sbjct 1773 CAGTCTTTG 1781
> AT5G51620.2 | Symbols: | Uncharacterised protein family (UPF0172)
| chr5:20967098-20968027 FORWARD LENGTH=324
Length=324
Score = 106 bits (57), Expect = 8e-22
Identities = 63/66 (95%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 1293 AGCAACAGGCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAAAATTAATGCTAAGGTCGCG 1352
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 183 AGCAAAAGGCTGCGAGTATCCAGTGTTCCGAGCAAGCTTAAGATTAATGCTAAGGTCGCC 242
Query 1353 AAAAAG 1358
||||||
Sbjct 243 AAAAAG 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87599951025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5