BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475305 Length=2990 Score E Sequences producing significant alignments: (Bits) Value AT1G60070.2 | Symbols: | Adaptor protein complex AP-1, gamma s... 4189 0.0 AT1G23900.1 | Symbols: GAMMA-ADAPTIN 1, Gamma-ADR | gamma-adapt... 1131 0.0 AT1G23940.1 | Symbols: | ARM repeat superfamily protein | chr1... 300 6e-80 > AT1G60070.2 | Symbols: | Adaptor protein complex AP-1, gamma subunit | chr1:22142604-22149527 REVERSE LENGTH=3268 Length=3268 Score = 4189 bits (2268), Expect = 0.0 Identities = 2506/2620 (96%), Gaps = 19/2620 (1%) Strand=Plus/Plus Query 1 TTTTCCGTTTTCTTTTAGTGAAGAGaaaaaaaaaaCACAGACGTCTCTCTTTCTTTGTTC 60 ||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| | ||| Sbjct 18 TTTTCCGTTTTCTTTCAGGGAAGAGAAAAAAAAAACACAGACCTCTCT-TTTCTCTCTTC 76 Query 61 ATATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAGaaaaaaaCTCTCAGATCTGGAA 120 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 77 --ATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAG--AAAAACACTCAGATCTGGAA 132 Query 121 ATTGAGCTTCTTAGATCTATG-ATTCTTCAAATCCGTTGATCCATTTTCTCGCGC-T-AA 177 ||| ||||||||||||||||| ||| ||||||| |||||||||||||| || ||| | || Sbjct 133 ATTCAGCTTCTTAGATCTATGAATT-TTCAAATTCGTTGATCCATTTT-TC-CGCTTCAA 189 Query 178 TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGATCATGAATCCGTTCTCTTCC 237 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct 190 TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCC 249 Query 238 GGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA 297 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 250 GGCACGCGTCTCAGCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA 309 Query 298 CGGGCTGTTGTGAGGAAAGAGTGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG 357 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 310 CGTGCTGTTGTGAGGAAAGAATGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG 369 Query 358 GACTATAGACACCGGGATCTAGCAAAGCTTATGTTCATTCATATGCTTGGTTATCCC-AC 416 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 370 GACTATAGACATCGGGATCTAGCGAAGCTTATGTTCATTCATATGCTTGGTTA-CCCTAC 428 Query 417 ACATTTTGGGCAGATGGAATGTTTGAAGTTAATTGCTTCTCCTGGATTTCCAGAGAAGAG 476 ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct 429 TCATTTTGGGCAAATGGAATGCTTGAAGTTAATTGCTTCTCCTGGATTTCCTGAGAAGAG 488 Query 477 GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTGGT 536 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 489 GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTTGT 548 Query 537 CACTAACTCGTTGAAGCAAGATCTGAATCATACGAACCAATACATTGTGGGGCTTGCTCT 596 ||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 549 CACCAACTCGCTGAAGCAAGATCTGAATCACACGAACCAGTACATTGTGGGGCTTGCTCT 608 Query 597 CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA 668 Query 657 AAGATTACTTCAATTTCGGGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCCATAAG 716 | |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 669 ACGATTACTTCAGTTTCGTGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCGATAAG 728 Query 717 GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTAGTGCTGCTTTACT 776 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 729 GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTGGTGCTGCTTTACT 788 Query 777 CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 789 CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA 848 Query 837 AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC 908 Query 897 CCTAAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA 956 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 CCTGAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA 968 Query 957 TCCATTTCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGA 1016 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 969 TCCATTCCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGGGATGCAGA 1028 Query 1017 GGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA 1076 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1029 TGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA 1088 Query 1077 AAATGCAGGCAATGCTATCCTATACGAATGTGTTCAAACGATAATGAGCATCGAAGAAAA 1136 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1089 AAATGCAGGGAATGCTATCCTATACGAATGCGTTCAAACGATAATGAGCATCGAAGAAAA 1148 Query 1137 TGGTGGTTTACGAGTCCTTGCAATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAA 1196 |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1149 TGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAA 1208 Query 1197 TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1209 TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC 1268 Query 1257 GGTTCAGAGGCACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA 1316 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 GGTTCAAAGACACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA 1328 Query 1317 GAAAAGGGCACTTGAGCTTATTTACCTTCTGGTGAATGAGAATAACGTGAAGCCACTAGC 1376 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1329 GAAAAGGGCACTTGAGCTTATTTACCTTCTAGTGAATGAGAATAACGTGAAGCCACTAGC 1388 Query 1377 AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1389 AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC 1448 Query 1437 AAAGATATGCTCCATTGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT 1496 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1449 AAAGATATGCTCCATAGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT 1508 Query 1497 GCTAAAGGTTCTATCGGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCACTGAT 1556 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1509 GCTAAAGGTTCTATCTGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCGCTGAT 1568 Query 1557 TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGC 1616 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1569 TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTATAGAGC 1628 Query 1617 ATTACATACATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGA 1676 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1629 ATTACATACATCTTTTGAACAGGAAACTCTTGTGCGCGTTGCAATATGGTGCATAGGAGA 1688 Query 1677 ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT 1736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1689 ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT 1748 Query 1737 AACAGAATCAGATGCAGTGGATGTTGTCGAGACTGCTATTAAGCATCATACATCGGATGT 1796 |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| Sbjct 1749 AACAGAATCAGATGCAGTGGATGTTGTCGAGAATGCTATTAAGCATCATTTATCAGATGT 1808 Query 1797 CACGACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCGTTTCCCTTCTTG 1856 ||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || || Sbjct 1809 CACAACTAAGGCAATGGCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTG 1868 Query 1857 TTCAGAGAGGGTTAAAAGTATTATAGGGCAGAACAAAGGTAGCTTTGTCTTAGAACTGCA 1916 ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1869 TTCAGAGAGAGTTAAAAGTATTATAGGACAGAACAAAGGTAGCTTTGTCTTAGAACTTCA 1928 Query 1917 ACAAAGATCCCTGGAATTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTGCCCT 1976 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || Sbjct 1929 ACAAAGATCCCTGGAGTTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTTCTCT 1988 Query 1977 GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT 2036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1989 GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT 2048 Query 2037 ACCAGCAGCTGTGTCAACTTCTGGAAAATCTCCGCTTAGCATTCCAAACGGTGTTGCTAA 2096 ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 2049 ACCAGCATCTGTGTCAACTTCTGGAAAATCTCCGCTTGGTATTCCAAACGGTGTTGCTAA 2108 Query 2097 AGCTGCTCCAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATACTCCTGCACC 2156 ||| || ||||||||| || ||||||||||| || |||||||||||||||||||| || Sbjct 2109 AGCAGC---AGCTCCTCTTGTTGATTTACTCGATCTGGGCTCTGATGATACTCCTGCGCC 2165 Query 2157 TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTAACGCAGCCTTC 2216 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2166 TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTATCGCAGCCTTC 2225 Query 2217 AGCACAACCTGGTGCCATGCAGCCATCTAAAGCTGGCGCGGATATTCTTATGGATCTGTT 2276 ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 2226 AGCACAACCTGGTGCCATGCAGCCATCGCAAGCTGGTGCGGATATTCTTATGGATCTGTT 2285 Query 2277 GTCAATTGGAACTCCTGCCCCTGTGCAAAATGGCTCGTCGAATGGAGACTTGTTATCTAT 2336 |||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 2286 GTCAATCGGAACTCCTGCCCCTGTGCAAAATGGCTCGGCGAATGGAGACTTATTATCTAT 2345 Query 2337 TCAAGATAACAATGCTCCAATAGC-C-TCCAT-GAATACAATTTCTGCGCCTTCTTCGAT 2393 |||||||||||||||||||||||| | | | | || | | |||||||||||||||| Sbjct 2346 TCAAGATAACAATGCTCCAATAGCGCCTTCTTTGACTTCTCCCACTGCGCCTTCTTCGAT 2405 Query 2394 GATGGATCTATTGGATGGATTTGGTCCCACCCCACCAAAGAGTGAGGACAAGGGTGCAGC 2453 ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 2406 GATGGATTTATTGGATGGATTTGGTCCCACCCCACCAAAGAGCGAGGACAAGAGTGCAGC 2465 Query 2454 ATATCCGTCCATTGTTGCATTTGAGAGTAGCTCCTTGAAGATTGAGTTCAACTTCACTAA 2513 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 2466 ATATCCGTCCATTGTTGCATTTGAAAGCAGCTCCTTGAAGATTGAGTTCAACTTCACAAA 2525 Query 2514 GCAATCAGAAAATCCTCAAACTATAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA 2573 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 2526 GCAATCAGAAAATCCTCAAACGACAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA 2585 Query 2574 CGTGTACACAGATTTTCTTTTCCAGGCTGCAGTTCCAAAG 2613 |||||||||||| ||||||||||||||||||||||||||| Sbjct 2586 CGTGTACACAGAATTTCTTTTCCAGGCTGCAGTTCCAAAG 2625 Score = 503 bits (272), Expect = 4e-141 Identities = 333/361 (92%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 2614 TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAACTCTCTTCCAGCCAACGGAAACATC 2673 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 2734 TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAATTCTCTTCCAGCTAACGGAAACATC 2793 Query 2674 AAACAAACTATGAGAGTTACAAATAGCCAACAGGGGAAGAAACCCATTGTGATGCGGATG 2733 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2794 AAACAAACTATGAGAGTTACAAATAGCCAAAAGGGGAAGAAACCCATTGTGATGCGGATG 2853 Query 2734 AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC 2793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2854 AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC 2913 Query 2794 CCACGTGGTTTATGAGAACTTTTCAGGTATCCCAAGATTCATATACATATTCCTAATTCA 2853 |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| | Sbjct 2914 CCACGTGGGTTATGAGAACGTTTCAGGTATTCCAAGATTCATATACATATTCCTAATTTA 2973 Query 2854 ATATATATAA-T-CACATCC-CTTAGAC----TTCTTCATAGAACGTTTTGTGTGTGTGA 2906 |||| || | | | ||| || | || ||||||||||||| ||| || ||||||| Sbjct 2974 -TATA-ATCACTTCCCATAGACTAAAACAAACTTCTTCATAGAACCTTT-GTATGTGTGA 3030 Query 2907 TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGAGAGATAACTTTTTGATAGTTTGAGTT 2966 ||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||| Sbjct 3031 TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGTGAGATAACTTTTTGATGGTCTGAGTT 3090 Query 2967 A 2967 | Sbjct 3091 A 3091 > AT1G23900.1 | Symbols: GAMMA-ADAPTIN 1, Gamma-ADR | gamma-adaptin 1 | chr1:8441171-8447519 FORWARD LENGTH=3141 Length=3141 Score = 1131 bits (612), Expect = 0.0 Identities = 1657/2150 (77%), Gaps = 117/2150 (5%) Strand=Plus/Plus Query 217 ATCATGAATCCGTTCTCTTCCGGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCG 276 ||||||||||| || ||||| || || ||| | || |||||||| || || ||| | || Sbjct 141 ATCATGAATCCCTTTTCTTCTGGTACTCGTTTAAGGGACATGATCCGTGCCATAAGAGC- 199 Query 277 A-GTAAAACCGCTGCTGAGGAACGGGCTGTTGTGAGGAAA-GAGTGTGCTGCGATCCGTG 334 | | ||||| ||||| ||||| || |||||||| | |||| |||||||| | || || | Sbjct 200 ATGCAAAACAGCTGCGGAGGAGCGAGCTGTTGT-AAGAAAGGAGTGTGCCGATATTCGAG 258 Query 335 C-TTCGATTAATGAAAATGACCAGGACT-ATAGACACCGGGATCTAGC-AAAGCTTATGT 391 | || |||||||||| |||||| | | | || | |||||| | || || ||| || |||| Sbjct 259 CATT-GATTAATGAAGATGACCCGCA-TGATCGGCACCGGAACCTTGCGAAA-CTCATGT 315 Query 392 TCATTCATATGCTTGGTTATCCCACACATTTTGGGCAGATGGAATGTTTGAAGTTAATTG 451 | || || ||||| |||||||||||||| |||||||||||||| || |||||| |||||| Sbjct 316 TTATACACATGCTGGGTTATCCCACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTG 375 Query 452 CTTCTCCTGGATTTCCAGAGAAGAGGATTGGTTATCTTGGATTAATGTTGCTTCTTGATG 511 | ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| Sbjct 376 CATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCTAGGGCTAATGTTGCTTCTTGATG 435 Query 512 AAAGGCAAGAAGTATTAATGCTGGTCACTAACTCGTTGAAGCAAGATCTGAATCA-TACG 570 | || |||||||| || ||||| ||||| || ||||| || |||||||| ||||| | || Sbjct 436 AGAGACAAGAAGTGTTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACT-CG 494 Query 571 AACCAATACATTGTGGGGCTTGCTCTCTGTGCTTTAGGAAATATTTGTTCAGCAGAAATG 630 ||||| || |||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 495 AACCAGTATGTTGTAGGACTTGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCAGAAATG 554 Query 631 GCTCGTGATCTCGCCCCTGAAGTTGAAAGATTACTTCAATTTCGGGATCCAAATATACGC 690 || |||||||| || || ||||| ||||||||| | || ||||| || || ||||| || Sbjct 555 GCCCGTGATCTTGCGCCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGA 614 Query 691 AAGAAAGCAGCTCTTTGCGCCA-TAAGGATCATCAGAAAAGTTCCGGATCTTTCTGAGAA 749 ||||| || || |||||| | | || | || || || |||||||| ||||| | || || Sbjct 615 AAGAAGGCGGCGCTTTGCTCTACTA-GAATAATAAGGAAAGTTCCAGATCTAGCAGAAAA 673 Query 750 CTTTATTAATCCTAG-TGCTGCTTTACTCAAAGAAAAGCATCATGGTGTTCTCATTACGG 808 ||| | ||| || | |||| | || || ||||||||||||||||| ||||| || || | Sbjct 674 CTTCGTAAATGCT-GCTGCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAG 732 Query 809 GAGTTCACCTTTGC-ACAGAAATCTGTAA-AGTCA-GTTCCGAAGCCCTTGAATATTTCC 865 ||||||| ||||| | ||| | || | | | | | | |||||||| || || ||| Sbjct 733 GAGTTCAACTTTGTTAT-GAATTATGCACGATTAATGAT--GAAGCCCTAGAGTACTTCA 789 Query 866 GGAA-GAAATGCACAGAGGG-CTTGGTTAAAACCCTAAGAGATATTGCAAACAGTC-CAT 922 | || ||||||||||||||| || | | ||||| | || |||||| | || || | ||| Sbjct 790 G-AACGAAATGCACAGAGGGACT-GATAAAAACTTTGAGGGATATTACTAATAG-CGCAT 846 Query 923 ATTCA-CCTGAGTATGACGTCGCTGGAATTACGGATCCATTTCTTCACAT-CAGATTGCT 980 || || ||||||||||| || || || || || || || ||||| ||||| | | ||||| Sbjct 847 AT-CAGCCTGAGTATGATGTTGCAGGGATCACAGACCCTTTTCTCCACATACGG-TTGCT 904 Query 981 CAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGAGGCCAGTGACT-GTATGA-ATGAT 1038 || || ||||||||||| ||||| || ||||| || || ||||| | | |||| | ||| Sbjct 905 CAGGCTCTTGCGTGTTTTAGGCCAGGGTGATGCTGATGCTAGTGATTTG-ATGACA-GAT 962 Query 1039 ATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAAAAATGCAGGCAATGCTATCCTA 1098 |||||||| ||||||||| ||||||| || ||||||||||| ||||| ||||| | || Sbjct 963 ATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAACGCAGGGAATGCGGTACTC 1022 Query 1099 TACGAATGTGTTCAAACGATAATGAGC-ATCGAAGAAAATGGTGGTTTACGAGTCCTTGC 1157 || || |||||| |||| || ||| || || ||||| | | | || || || ||||| Sbjct 1023 TATGAGTGTGTTGAAACAATCATG-GCCATTGAAGACACCAATAGCTTGCGTGTGCTTGC 1081 Query 1158 AATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAATAACATCAGATACGTAGCATT 1217 |||||||||||||||| |||||| || ||||| || |||||||||||||| || ||||| Sbjct 1082 TATCAATATCTTGGGAAGATTCTTATCTAACCGCGACAATAACATCAGATATGTTGCATT 1141 Query 1218 AAACATGCTGATGAGATCCT-TAACTGTT-GATTCCCAAGCGGTTCAGAGGCACAGAGCT 1275 |||||||||||||| | | | | ||| || ||| ||||| || || |||||||||| | Sbjct 1142 AAACATGCTGATGAAAGC-TATCACT-TTCGATGATCAAGCAGTGCAAAGGCACAGAGTT 1199 Query 1276 ACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCAGAAAAGGGCACTTGAGCTT 1335 ||||| |||| ||||| ||||| |||||||||| || | |||||| || ||||||||| Sbjct 1200 ACAATTTTGGAATGTGTGAAGGACCCAGATGCTTCTATCCGGAAAAGAGCTCTTGAGCTT 1259 Query 1336 ATTTAC-CTTCTGGTGAATGAGAATAACGTGA-AGCCACT-AGCAAAGGAGCTTATAGAA 1392 | || ||| |||||||||| || || || | | | ||| | |||||||||| || || Sbjct 1260 GTC-ACTCTTTTGGTGAATGAAAACAATGTCACA-CAACTGA-CAAAGGAGCTAATTGAT 1316 Query 1393 TATTTGGAAGTAAGCGAAC-AAGATTTTAAAGGA-GATCTTACTGCAAAGATATGCTCCA 1450 ||||||||| | ||||| | |||||||||| ||| ||||||| |||||| || || | | Sbjct 1317 TATTTGGAAATCAGCGA-CGAAGATTTTAA-GGAAGATCTTAGTGCAAAAATTTGTTTTA 1374 Query 1451 TTGTTGAAAAGTTTGCTCCAGAGAAAA-TCTGGTACATTGATCAAATGCTAAAGGTTCTA 1509 | |||||||||||| ||||||| |||| | |||||||||||||| ||||| |||||||| Sbjct 1375 TCGTTGAAAAGTTTTCTCCAGA-AAAACTATGGTACATTGATCAGATGCTCAAGGTTCTG 1433 Query 1510 TCG-GAGGCTGGAAC-TTATGTGAAAGAGGATGTATGGCACGCACTGATTGTTGTAATAA 1567 | | |||||||||| || ||||||||| ||||| ||||| ||||| |||||||| |||| Sbjct 1434 T-GTGAGGCTGGAAAGTT-TGTGAAAGATGATGTGTGGCATGCACTTATTGTTGTCATAA 1491 Query 1568 -CAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGCATTACAT-AC 1625 ||| ||| | || || ||||| || || || ||||| ||||||| | || | | | || Sbjct 1492 GCAA-TGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACAAATCAGT-CTTGAC 1549 Query 1626 ATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGAATATGCTGA 1685 | || |||||||| || ||||| || || || |||||||||| || ||||||| ||| Sbjct 1550 TTATTCGGAACAGGAGACCCTTGTCCGAGTGGCGGTATGGTGCATTGGGGAATATGGTGA 1609 Query 1686 TCTGTTGGTTAACAATGCTGGA-ATGCTTG--ACTTAGAAGATCCAATAACGGTAACAGA 1742 ||||||||||||||||| ||| ||||||| | || |||||||||||||||||||| || Sbjct 1610 TCTGTTGGTTAACAATG-TGGGGATGCTTGGTA-TT-GAAGATCCAATAACGGTAACGGA 1666 Query 1743 ATCAGATGCAGTGGATGTTGTCGAG-ACTGCTATTAAGCATCATA-CATCGGATGTC-AC 1799 ||| ||||||||||| ||| ||||| | ||| |||| | |||| | || ||| || || Sbjct 1667 ATCTGATGCAGTGGACGTTATCGAGGA-TGCCATTACTCGCCATAAC-TCAGAT-TCGAC 1723 Query 1800 GACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCG-TTTCCCTTCT-TGT 1857 || || |||||| || | ||||||| | ||| | |||||||| ||||| |||| | | Sbjct 1724 TACAAAAGCAATGGCATTGGTTGCTCTACTGAAGTTGTCATCCCGCTTTCC-TTCTAT-T 1781 Query 1858 TCAGAGAGGGTTAAA-AGTATTATAGGGCAGAACAAAGGTAGCTTTGTC-TTAGAACTGC 1915 |||||||| ||||| | || || | | || | ||||| ||| || || || ||| ||| Sbjct 1782 TCAGAGAGAATTAAAGAC-ATAATTGTGAAGCAGAAAGGAAGCCTTCTCCTT-GAAATGC 1839 Query 1916 AACAAAGATCCCTGGAATTCAGTTC-AGTTA-TTCAAAAGCATCAGAATATAAGATCTGC 1973 | || ||| | | |||| || ||| | | | || | | |||| | ||||| || ||| | Sbjct 1840 AGCAGAGAGCTATTGAATACAATTCTA-T-AGTTGACAGGCATAAAAATATCAGGTCTTC 1897 Query 1974 CCTGGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTT-AGTG-GAAGGAGAGCTGGT 2031 |||||||| ||||||||||| || |||||||| || ||| | || || |||| || || Sbjct 1898 TCTGGTTGACAGAATGCCGGTACTGGATGAGGCTAC-TTTCAATGTGA-GGAGGGCCGGC 1955 Query 2032 TCTTTACCAGCAGCTGTGTCAACTTCTGGAAAATC-TCC-GCTTAGCATTCCAAACGGTG 2089 ||||| || ||| | || ||||| ||| || | | | | ||||| ||| ||| |||| Sbjct 1956 TCTTTTCCTGCATCAGTTTCAACCA-TGGCCAAGCCTTCAG-TTAGCCTTCAAAATGGTG 2013 Query 2090 TTGCTAAAGCTGC-TC-CAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATA- 2146 ||| ||| || | | | |||||||| || || || || ||||| | ||||| |||| Sbjct 2014 TTGAGAAA-CTTCCTGTC-GCTCCTCTTGTGGACTTGCTAGACCTAGATTCTGACGATAT 2071 Query 2147 C-TC-CTGCACCTACCTCC-TCCAGTAACA-ACTTTC-TTCAAGATCTTCTTGGTGTTGA 2201 | | ||||||||| ||| || ||| || | |||| |||| |||||||| ||||| || Sbjct 2072 CATGGCTGCACCTAG-TCCATCTGGTA-CAGA-TTTCCTTCAGGATCTTCTCGGTGTAGA 2128 Query 2202 TTTAACG--CAGCCTTCAGCACAACCTGGTGCCATGCAGCCATCTAAA-GCTGGCGCGGA 2258 ||| | || | | |||||||| |||||| | ||| | || ||| |||||| | || Sbjct 2129 CTTAG-GTTCATCGT-CAGCACAATATGGTGCAACCCAGGC-TCCAAAAGCTGGCACAGA 2185 Query 2259 TATTCTTA-TGGATCTGT-TGTCAATTGGAACTCCTGCCCCTGTGCAAAA 2306 | | || ||||| | | | ||||||||||| ||| | |||| ||||| Sbjct 2186 TCTG-TTGCTGGATAT-TCTATCAATTGGAACACCTTCTCCTGCACAAAA 2233 > AT1G23940.1 | Symbols: | ARM repeat superfamily protein | chr1:8466094-8469346 FORWARD LENGTH=1488 Length=1488 Score = 300 bits (162), Expect = 6e-80 Identities = 613/821 (75%), Gaps = 69/821 (8%) Strand=Plus/Plus Query 253 GACATGATTCGGGCTATACGTGCGA-GTAAAACCGCTGCTGAGGAACGGGCTGTTGTGAG 311 |||||||| || || || | || | || |||| ||||| ||||| || |||||||| || Sbjct 406 GACATGATCCGTGCCGTAAGAGC-ATGTCAAACAGCTGCGGAGGAGCGAGCTGTTGTAAG 464 Query 312 GAAAGAGTGTGCTGCGATCCGTGC-TTCGATTAATGAAAATGACCAGGACT-ATAGACAC 369 ||||||||||| ||||| || || ||||||||| |||||| | | | |||| ||| Sbjct 465 AAAAGAGTGTGCCAATATCCGAGCATT-AATTAATGAAGATGACCCGCA-TGATAGGCAC 522 Query 370 CGGGATCTAGCAAAGCTTATGTTCATTCATATGCTTGGTTATCCC-ACACATTTTGGGCA 428 ||| | || ||||| || ||| |||| || ||||| ||||| ||| ||||| |||| ||| Sbjct 523 CGGAACCTTGCAAAACTCATGCTCATACACATGCTGGGTTA-CCCGACACACTTTGTGCA 581 Query 429 GATGGAATGTTTGAAGTTAATTGCTTCTCCTGGATTTCCAGAGAAGAGGATTGGTTATCT 488 |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 582 GATGGAGTGTTTGAAGCTAATTGCATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCT 641 Query 489 TGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTGGTCACTAACTCGTT 548 ||| ||||||||| | |||| | | ||| | || | | | ||| Sbjct 642 TGGGTTAATGTTGATGCTTG-TCA----CAA-A-GT-------C-G-T---TAA------ 676 Query 549 GAAGCAAGATCTGAATCA-TACGAACCAATACATTGTGGGGCTTGCTCTCTGTGCTTTAG 607 || |||||||| ||||| | ||||||| || |||| || || ||||||| |||||||| Sbjct 677 -AA-CAAGATCTTAATCACT-CGAACCAGTATGTTGTAGGACTCGCTCTCTTTGCTTTAG 733 Query 608 GAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGAAAGATTACTTC 667 | |||||||||||||| |||||||| | |||||| || || ||||| ||||||||| | | Sbjct 734 GGAATATTTGTTCAGCGGAAATGGCCCCTGATCTTGCGCCAGAAGTAGAAAGATTAGTCC 793 Query 668 AATTTCGGGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCCA-TAAGGATCA-TCAG 725 | ||||| || || ||||| || ||||| || || |||||| | | || | || | | || Sbjct 794 AGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTTTGCTCTACTA-GAAT-AGTAAG 851 Query 726 AAAAGTTCCGGATCTTTCT-GAGAACTTTATTAATC-CT-AGTGCTGCTTTACTCAAAGA 782 |||||||| ||| || | || |||||| | || | || | |||| | || || ||||| Sbjct 852 GAAAGTTCCAGAT-TTAGTAGAAAACTTTGTAAA-CGCTGA-TGCTTCCTTGCTTAAAGA 908 Query 783 AAAGCATCATGGTGTTCTCATTACG-GGAGTTCACCTTTGC-ACAGAAATCTGTAA-AGT 839 |||||||||||| ||||| || | | |||||||| ||||| | ||| | || | | | Sbjct 909 AAAGCATCATGGGGTTCTAATAA-GAGGAGTTCAACTTTGTTAT-GAATTATGCACGATT 966 Query 840 CA-GTTCCGAAGCCCTTGAATATTTCCGGAA-GAAATGCACAGAGGG-CTTGGTTAAAAC 896 | | | |||||||| || || ||| | || ||||||||| ||||| || | | |||| Sbjct 967 AATGAT--GAAGCCCTAGAGTACTTCAG-AACGAAATGCACGGAGGGACT-GAT-AAAAT 1021 Query 897 CCTA-AGAGATATTGCAAACAGTCCATATTCA-CCTGAGTATGACGTCGCTGGAATTACG 954 | || |||||| | || || ||||| || |||||||| || || || || || || Sbjct 1022 TTTTGAGGGATATTACTAATTGTGCATAT-CAGCCTGAGTACGATGTTGCAGGGATCACA 1080 Query 955 GATCCATTTCTTCACAT-CAGATTGCTCAAACTG-TTGCGTGTTTTGGGCCAAGGCGATG 1012 || || |||||||| | | | ||||| || | ||||||||||| ||||| || || | Sbjct 1081 GACCCTTTTCTTCAAAGACGG-TTGCT-AAGGTTCTTGCGTGTTTTAGGCCAGGGTGACG 1138 Query 1013 CAGAGGCCAGTGACT-GTATGAATGATATACTTGCTCAGGT 1052 | || || ||||| | | |||| | |||||||||| ||||| Sbjct 1139 CTGATGCTAGTGATTTG-ATGACTCATATACTTGCCCAGGT 1178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 148644652109 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5