BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475305
Length=2990
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60070.2 | Symbols: | Adaptor protein complex AP-1, gamma s... 4189 0.0
AT1G23900.1 | Symbols: GAMMA-ADAPTIN 1, Gamma-ADR | gamma-adapt... 1131 0.0
AT1G23940.1 | Symbols: | ARM repeat superfamily protein | chr1... 300 6e-80
> AT1G60070.2 | Symbols: | Adaptor protein complex AP-1, gamma
subunit | chr1:22142604-22149527 REVERSE LENGTH=3268
Length=3268
Score = 4189 bits (2268), Expect = 0.0
Identities = 2506/2620 (96%), Gaps = 19/2620 (1%)
Strand=Plus/Plus
Query 1 TTTTCCGTTTTCTTTTAGTGAAGAGaaaaaaaaaaCACAGACGTCTCTCTTTCTTTGTTC 60
||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| | |||
Sbjct 18 TTTTCCGTTTTCTTTCAGGGAAGAGAAAAAAAAAACACAGACCTCTCT-TTTCTCTCTTC 76
Query 61 ATATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAGaaaaaaaCTCTCAGATCTGGAA 120
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 77 --ATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAG--AAAAACACTCAGATCTGGAA 132
Query 121 ATTGAGCTTCTTAGATCTATG-ATTCTTCAAATCCGTTGATCCATTTTCTCGCGC-T-AA 177
||| ||||||||||||||||| ||| ||||||| |||||||||||||| || ||| | ||
Sbjct 133 ATTCAGCTTCTTAGATCTATGAATT-TTCAAATTCGTTGATCCATTTT-TC-CGCTTCAA 189
Query 178 TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGATCATGAATCCGTTCTCTTCC 237
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 190 TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCC 249
Query 238 GGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA 297
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 250 GGCACGCGTCTCAGCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA 309
Query 298 CGGGCTGTTGTGAGGAAAGAGTGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG 357
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 310 CGTGCTGTTGTGAGGAAAGAATGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG 369
Query 358 GACTATAGACACCGGGATCTAGCAAAGCTTATGTTCATTCATATGCTTGGTTATCCC-AC 416
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 370 GACTATAGACATCGGGATCTAGCGAAGCTTATGTTCATTCATATGCTTGGTTA-CCCTAC 428
Query 417 ACATTTTGGGCAGATGGAATGTTTGAAGTTAATTGCTTCTCCTGGATTTCCAGAGAAGAG 476
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 429 TCATTTTGGGCAAATGGAATGCTTGAAGTTAATTGCTTCTCCTGGATTTCCTGAGAAGAG 488
Query 477 GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTGGT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 489 GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTTGT 548
Query 537 CACTAACTCGTTGAAGCAAGATCTGAATCATACGAACCAATACATTGTGGGGCTTGCTCT 596
||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 549 CACCAACTCGCTGAAGCAAGATCTGAATCACACGAACCAGTACATTGTGGGGCTTGCTCT 608
Query 597 CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA 668
Query 657 AAGATTACTTCAATTTCGGGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCCATAAG 716
| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 669 ACGATTACTTCAGTTTCGTGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCGATAAG 728
Query 717 GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTAGTGCTGCTTTACT 776
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 729 GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTGGTGCTGCTTTACT 788
Query 777 CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA 848
Query 837 AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC 908
Query 897 CCTAAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA 956
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CCTGAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA 968
Query 957 TCCATTTCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGA 1016
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 969 TCCATTCCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGGGATGCAGA 1028
Query 1017 GGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA 1088
Query 1077 AAATGCAGGCAATGCTATCCTATACGAATGTGTTCAAACGATAATGAGCATCGAAGAAAA 1136
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1089 AAATGCAGGGAATGCTATCCTATACGAATGCGTTCAAACGATAATGAGCATCGAAGAAAA 1148
Query 1137 TGGTGGTTTACGAGTCCTTGCAATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAA 1196
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1149 TGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAA 1208
Query 1197 TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC 1268
Query 1257 GGTTCAGAGGCACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA 1316
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GGTTCAAAGACACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA 1328
Query 1317 GAAAAGGGCACTTGAGCTTATTTACCTTCTGGTGAATGAGAATAACGTGAAGCCACTAGC 1376
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1329 GAAAAGGGCACTTGAGCTTATTTACCTTCTAGTGAATGAGAATAACGTGAAGCCACTAGC 1388
Query 1377 AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC 1448
Query 1437 AAAGATATGCTCCATTGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT 1496
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 AAAGATATGCTCCATAGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT 1508
Query 1497 GCTAAAGGTTCTATCGGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCACTGAT 1556
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1509 GCTAAAGGTTCTATCTGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCGCTGAT 1568
Query 1557 TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGC 1616
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1569 TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTATAGAGC 1628
Query 1617 ATTACATACATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGA 1676
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1629 ATTACATACATCTTTTGAACAGGAAACTCTTGTGCGCGTTGCAATATGGTGCATAGGAGA 1688
Query 1677 ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT 1748
Query 1737 AACAGAATCAGATGCAGTGGATGTTGTCGAGACTGCTATTAAGCATCATACATCGGATGT 1796
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||
Sbjct 1749 AACAGAATCAGATGCAGTGGATGTTGTCGAGAATGCTATTAAGCATCATTTATCAGATGT 1808
Query 1797 CACGACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCGTTTCCCTTCTTG 1856
||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1809 CACAACTAAGGCAATGGCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTG 1868
Query 1857 TTCAGAGAGGGTTAAAAGTATTATAGGGCAGAACAAAGGTAGCTTTGTCTTAGAACTGCA 1916
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1869 TTCAGAGAGAGTTAAAAGTATTATAGGACAGAACAAAGGTAGCTTTGTCTTAGAACTTCA 1928
Query 1917 ACAAAGATCCCTGGAATTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTGCCCT 1976
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1929 ACAAAGATCCCTGGAGTTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTTCTCT 1988
Query 1977 GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT 2048
Query 2037 ACCAGCAGCTGTGTCAACTTCTGGAAAATCTCCGCTTAGCATTCCAAACGGTGTTGCTAA 2096
||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2049 ACCAGCATCTGTGTCAACTTCTGGAAAATCTCCGCTTGGTATTCCAAACGGTGTTGCTAA 2108
Query 2097 AGCTGCTCCAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATACTCCTGCACC 2156
||| || ||||||||| || ||||||||||| || |||||||||||||||||||| ||
Sbjct 2109 AGCAGC---AGCTCCTCTTGTTGATTTACTCGATCTGGGCTCTGATGATACTCCTGCGCC 2165
Query 2157 TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTAACGCAGCCTTC 2216
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2166 TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTATCGCAGCCTTC 2225
Query 2217 AGCACAACCTGGTGCCATGCAGCCATCTAAAGCTGGCGCGGATATTCTTATGGATCTGTT 2276
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 2226 AGCACAACCTGGTGCCATGCAGCCATCGCAAGCTGGTGCGGATATTCTTATGGATCTGTT 2285
Query 2277 GTCAATTGGAACTCCTGCCCCTGTGCAAAATGGCTCGTCGAATGGAGACTTGTTATCTAT 2336
|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 2286 GTCAATCGGAACTCCTGCCCCTGTGCAAAATGGCTCGGCGAATGGAGACTTATTATCTAT 2345
Query 2337 TCAAGATAACAATGCTCCAATAGC-C-TCCAT-GAATACAATTTCTGCGCCTTCTTCGAT 2393
|||||||||||||||||||||||| | | | | || | | ||||||||||||||||
Sbjct 2346 TCAAGATAACAATGCTCCAATAGCGCCTTCTTTGACTTCTCCCACTGCGCCTTCTTCGAT 2405
Query 2394 GATGGATCTATTGGATGGATTTGGTCCCACCCCACCAAAGAGTGAGGACAAGGGTGCAGC 2453
||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2406 GATGGATTTATTGGATGGATTTGGTCCCACCCCACCAAAGAGCGAGGACAAGAGTGCAGC 2465
Query 2454 ATATCCGTCCATTGTTGCATTTGAGAGTAGCTCCTTGAAGATTGAGTTCAACTTCACTAA 2513
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 2466 ATATCCGTCCATTGTTGCATTTGAAAGCAGCTCCTTGAAGATTGAGTTCAACTTCACAAA 2525
Query 2514 GCAATCAGAAAATCCTCAAACTATAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA 2573
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2526 GCAATCAGAAAATCCTCAAACGACAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA 2585
Query 2574 CGTGTACACAGATTTTCTTTTCCAGGCTGCAGTTCCAAAG 2613
|||||||||||| |||||||||||||||||||||||||||
Sbjct 2586 CGTGTACACAGAATTTCTTTTCCAGGCTGCAGTTCCAAAG 2625
Score = 503 bits (272), Expect = 4e-141
Identities = 333/361 (92%), Gaps = 10/361 (3%)
Strand=Plus/Plus
Query 2614 TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAACTCTCTTCCAGCCAACGGAAACATC 2673
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2734 TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAATTCTCTTCCAGCTAACGGAAACATC 2793
Query 2674 AAACAAACTATGAGAGTTACAAATAGCCAACAGGGGAAGAAACCCATTGTGATGCGGATG 2733
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2794 AAACAAACTATGAGAGTTACAAATAGCCAAAAGGGGAAGAAACCCATTGTGATGCGGATG 2853
Query 2734 AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC 2793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2854 AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC 2913
Query 2794 CCACGTGGTTTATGAGAACTTTTCAGGTATCCCAAGATTCATATACATATTCCTAATTCA 2853
|||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 2914 CCACGTGGGTTATGAGAACGTTTCAGGTATTCCAAGATTCATATACATATTCCTAATTTA 2973
Query 2854 ATATATATAA-T-CACATCC-CTTAGAC----TTCTTCATAGAACGTTTTGTGTGTGTGA 2906
|||| || | | | ||| || | || ||||||||||||| ||| || |||||||
Sbjct 2974 -TATA-ATCACTTCCCATAGACTAAAACAAACTTCTTCATAGAACCTTT-GTATGTGTGA 3030
Query 2907 TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGAGAGATAACTTTTTGATAGTTTGAGTT 2966
||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 3031 TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGTGAGATAACTTTTTGATGGTCTGAGTT 3090
Query 2967 A 2967
|
Sbjct 3091 A 3091
> AT1G23900.1 | Symbols: GAMMA-ADAPTIN 1, Gamma-ADR | gamma-adaptin
1 | chr1:8441171-8447519 FORWARD LENGTH=3141
Length=3141
Score = 1131 bits (612), Expect = 0.0
Identities = 1657/2150 (77%), Gaps = 117/2150 (5%)
Strand=Plus/Plus
Query 217 ATCATGAATCCGTTCTCTTCCGGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCG 276
||||||||||| || ||||| || || ||| | || |||||||| || || ||| | ||
Sbjct 141 ATCATGAATCCCTTTTCTTCTGGTACTCGTTTAAGGGACATGATCCGTGCCATAAGAGC- 199
Query 277 A-GTAAAACCGCTGCTGAGGAACGGGCTGTTGTGAGGAAA-GAGTGTGCTGCGATCCGTG 334
| | ||||| ||||| ||||| || |||||||| | |||| |||||||| | || || |
Sbjct 200 ATGCAAAACAGCTGCGGAGGAGCGAGCTGTTGT-AAGAAAGGAGTGTGCCGATATTCGAG 258
Query 335 C-TTCGATTAATGAAAATGACCAGGACT-ATAGACACCGGGATCTAGC-AAAGCTTATGT 391
| || |||||||||| |||||| | | | || | |||||| | || || ||| || ||||
Sbjct 259 CATT-GATTAATGAAGATGACCCGCA-TGATCGGCACCGGAACCTTGCGAAA-CTCATGT 315
Query 392 TCATTCATATGCTTGGTTATCCCACACATTTTGGGCAGATGGAATGTTTGAAGTTAATTG 451
| || || ||||| |||||||||||||| |||||||||||||| || |||||| ||||||
Sbjct 316 TTATACACATGCTGGGTTATCCCACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTG 375
Query 452 CTTCTCCTGGATTTCCAGAGAAGAGGATTGGTTATCTTGGATTAATGTTGCTTCTTGATG 511
| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 376 CATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCTAGGGCTAATGTTGCTTCTTGATG 435
Query 512 AAAGGCAAGAAGTATTAATGCTGGTCACTAACTCGTTGAAGCAAGATCTGAATCA-TACG 570
| || |||||||| || ||||| ||||| || ||||| || |||||||| ||||| | ||
Sbjct 436 AGAGACAAGAAGTGTTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACT-CG 494
Query 571 AACCAATACATTGTGGGGCTTGCTCTCTGTGCTTTAGGAAATATTTGTTCAGCAGAAATG 630
||||| || |||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 495 AACCAGTATGTTGTAGGACTTGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCAGAAATG 554
Query 631 GCTCGTGATCTCGCCCCTGAAGTTGAAAGATTACTTCAATTTCGGGATCCAAATATACGC 690
|| |||||||| || || ||||| ||||||||| | || ||||| || || ||||| ||
Sbjct 555 GCCCGTGATCTTGCGCCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGA 614
Query 691 AAGAAAGCAGCTCTTTGCGCCA-TAAGGATCATCAGAAAAGTTCCGGATCTTTCTGAGAA 749
||||| || || |||||| | | || | || || || |||||||| ||||| | || ||
Sbjct 615 AAGAAGGCGGCGCTTTGCTCTACTA-GAATAATAAGGAAAGTTCCAGATCTAGCAGAAAA 673
Query 750 CTTTATTAATCCTAG-TGCTGCTTTACTCAAAGAAAAGCATCATGGTGTTCTCATTACGG 808
||| | ||| || | |||| | || || ||||||||||||||||| ||||| || || |
Sbjct 674 CTTCGTAAATGCT-GCTGCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAG 732
Query 809 GAGTTCACCTTTGC-ACAGAAATCTGTAA-AGTCA-GTTCCGAAGCCCTTGAATATTTCC 865
||||||| ||||| | ||| | || | | | | | | |||||||| || || |||
Sbjct 733 GAGTTCAACTTTGTTAT-GAATTATGCACGATTAATGAT--GAAGCCCTAGAGTACTTCA 789
Query 866 GGAA-GAAATGCACAGAGGG-CTTGGTTAAAACCCTAAGAGATATTGCAAACAGTC-CAT 922
| || ||||||||||||||| || | | ||||| | || |||||| | || || | |||
Sbjct 790 G-AACGAAATGCACAGAGGGACT-GATAAAAACTTTGAGGGATATTACTAATAG-CGCAT 846
Query 923 ATTCA-CCTGAGTATGACGTCGCTGGAATTACGGATCCATTTCTTCACAT-CAGATTGCT 980
|| || ||||||||||| || || || || || || || ||||| ||||| | | |||||
Sbjct 847 AT-CAGCCTGAGTATGATGTTGCAGGGATCACAGACCCTTTTCTCCACATACGG-TTGCT 904
Query 981 CAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGAGGCCAGTGACT-GTATGA-ATGAT 1038
|| || ||||||||||| ||||| || ||||| || || ||||| | | |||| | |||
Sbjct 905 CAGGCTCTTGCGTGTTTTAGGCCAGGGTGATGCTGATGCTAGTGATTTG-ATGACA-GAT 962
Query 1039 ATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAAAAATGCAGGCAATGCTATCCTA 1098
|||||||| ||||||||| ||||||| || ||||||||||| ||||| ||||| | ||
Sbjct 963 ATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAACGCAGGGAATGCGGTACTC 1022
Query 1099 TACGAATGTGTTCAAACGATAATGAGC-ATCGAAGAAAATGGTGGTTTACGAGTCCTTGC 1157
|| || |||||| |||| || ||| || || ||||| | | | || || || |||||
Sbjct 1023 TATGAGTGTGTTGAAACAATCATG-GCCATTGAAGACACCAATAGCTTGCGTGTGCTTGC 1081
Query 1158 AATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAATAACATCAGATACGTAGCATT 1217
|||||||||||||||| |||||| || ||||| || |||||||||||||| || |||||
Sbjct 1082 TATCAATATCTTGGGAAGATTCTTATCTAACCGCGACAATAACATCAGATATGTTGCATT 1141
Query 1218 AAACATGCTGATGAGATCCT-TAACTGTT-GATTCCCAAGCGGTTCAGAGGCACAGAGCT 1275
|||||||||||||| | | | | ||| || ||| ||||| || || |||||||||| |
Sbjct 1142 AAACATGCTGATGAAAGC-TATCACT-TTCGATGATCAAGCAGTGCAAAGGCACAGAGTT 1199
Query 1276 ACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCAGAAAAGGGCACTTGAGCTT 1335
||||| |||| ||||| ||||| |||||||||| || | |||||| || |||||||||
Sbjct 1200 ACAATTTTGGAATGTGTGAAGGACCCAGATGCTTCTATCCGGAAAAGAGCTCTTGAGCTT 1259
Query 1336 ATTTAC-CTTCTGGTGAATGAGAATAACGTGA-AGCCACT-AGCAAAGGAGCTTATAGAA 1392
| || ||| |||||||||| || || || | | | ||| | |||||||||| || ||
Sbjct 1260 GTC-ACTCTTTTGGTGAATGAAAACAATGTCACA-CAACTGA-CAAAGGAGCTAATTGAT 1316
Query 1393 TATTTGGAAGTAAGCGAAC-AAGATTTTAAAGGA-GATCTTACTGCAAAGATATGCTCCA 1450
||||||||| | ||||| | |||||||||| ||| ||||||| |||||| || || | |
Sbjct 1317 TATTTGGAAATCAGCGA-CGAAGATTTTAA-GGAAGATCTTAGTGCAAAAATTTGTTTTA 1374
Query 1451 TTGTTGAAAAGTTTGCTCCAGAGAAAA-TCTGGTACATTGATCAAATGCTAAAGGTTCTA 1509
| |||||||||||| ||||||| |||| | |||||||||||||| ||||| ||||||||
Sbjct 1375 TCGTTGAAAAGTTTTCTCCAGA-AAAACTATGGTACATTGATCAGATGCTCAAGGTTCTG 1433
Query 1510 TCG-GAGGCTGGAAC-TTATGTGAAAGAGGATGTATGGCACGCACTGATTGTTGTAATAA 1567
| | |||||||||| || ||||||||| ||||| ||||| ||||| |||||||| ||||
Sbjct 1434 T-GTGAGGCTGGAAAGTT-TGTGAAAGATGATGTGTGGCATGCACTTATTGTTGTCATAA 1491
Query 1568 -CAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGCATTACAT-AC 1625
||| ||| | || || ||||| || || || ||||| ||||||| | || | | | ||
Sbjct 1492 GCAA-TGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACAAATCAGT-CTTGAC 1549
Query 1626 ATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGAATATGCTGA 1685
| || |||||||| || ||||| || || || |||||||||| || ||||||| |||
Sbjct 1550 TTATTCGGAACAGGAGACCCTTGTCCGAGTGGCGGTATGGTGCATTGGGGAATATGGTGA 1609
Query 1686 TCTGTTGGTTAACAATGCTGGA-ATGCTTG--ACTTAGAAGATCCAATAACGGTAACAGA 1742
||||||||||||||||| ||| ||||||| | || |||||||||||||||||||| ||
Sbjct 1610 TCTGTTGGTTAACAATG-TGGGGATGCTTGGTA-TT-GAAGATCCAATAACGGTAACGGA 1666
Query 1743 ATCAGATGCAGTGGATGTTGTCGAG-ACTGCTATTAAGCATCATA-CATCGGATGTC-AC 1799
||| ||||||||||| ||| ||||| | ||| |||| | |||| | || ||| || ||
Sbjct 1667 ATCTGATGCAGTGGACGTTATCGAGGA-TGCCATTACTCGCCATAAC-TCAGAT-TCGAC 1723
Query 1800 GACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCG-TTTCCCTTCT-TGT 1857
|| || |||||| || | ||||||| | ||| | |||||||| ||||| |||| | |
Sbjct 1724 TACAAAAGCAATGGCATTGGTTGCTCTACTGAAGTTGTCATCCCGCTTTCC-TTCTAT-T 1781
Query 1858 TCAGAGAGGGTTAAA-AGTATTATAGGGCAGAACAAAGGTAGCTTTGTC-TTAGAACTGC 1915
|||||||| ||||| | || || | | || | ||||| ||| || || || ||| |||
Sbjct 1782 TCAGAGAGAATTAAAGAC-ATAATTGTGAAGCAGAAAGGAAGCCTTCTCCTT-GAAATGC 1839
Query 1916 AACAAAGATCCCTGGAATTCAGTTC-AGTTA-TTCAAAAGCATCAGAATATAAGATCTGC 1973
| || ||| | | |||| || ||| | | | || | | |||| | ||||| || ||| |
Sbjct 1840 AGCAGAGAGCTATTGAATACAATTCTA-T-AGTTGACAGGCATAAAAATATCAGGTCTTC 1897
Query 1974 CCTGGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTT-AGTG-GAAGGAGAGCTGGT 2031
|||||||| ||||||||||| || |||||||| || ||| | || || |||| || ||
Sbjct 1898 TCTGGTTGACAGAATGCCGGTACTGGATGAGGCTAC-TTTCAATGTGA-GGAGGGCCGGC 1955
Query 2032 TCTTTACCAGCAGCTGTGTCAACTTCTGGAAAATC-TCC-GCTTAGCATTCCAAACGGTG 2089
||||| || ||| | || ||||| ||| || | | | | ||||| ||| ||| ||||
Sbjct 1956 TCTTTTCCTGCATCAGTTTCAACCA-TGGCCAAGCCTTCAG-TTAGCCTTCAAAATGGTG 2013
Query 2090 TTGCTAAAGCTGC-TC-CAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATA- 2146
||| ||| || | | | |||||||| || || || || ||||| | ||||| ||||
Sbjct 2014 TTGAGAAA-CTTCCTGTC-GCTCCTCTTGTGGACTTGCTAGACCTAGATTCTGACGATAT 2071
Query 2147 C-TC-CTGCACCTACCTCC-TCCAGTAACA-ACTTTC-TTCAAGATCTTCTTGGTGTTGA 2201
| | ||||||||| ||| || ||| || | |||| |||| |||||||| ||||| ||
Sbjct 2072 CATGGCTGCACCTAG-TCCATCTGGTA-CAGA-TTTCCTTCAGGATCTTCTCGGTGTAGA 2128
Query 2202 TTTAACG--CAGCCTTCAGCACAACCTGGTGCCATGCAGCCATCTAAA-GCTGGCGCGGA 2258
||| | || | | |||||||| |||||| | ||| | || ||| |||||| | ||
Sbjct 2129 CTTAG-GTTCATCGT-CAGCACAATATGGTGCAACCCAGGC-TCCAAAAGCTGGCACAGA 2185
Query 2259 TATTCTTA-TGGATCTGT-TGTCAATTGGAACTCCTGCCCCTGTGCAAAA 2306
| | || ||||| | | | ||||||||||| ||| | |||| |||||
Sbjct 2186 TCTG-TTGCTGGATAT-TCTATCAATTGGAACACCTTCTCCTGCACAAAA 2233
> AT1G23940.1 | Symbols: | ARM repeat superfamily protein | chr1:8466094-8469346
FORWARD LENGTH=1488
Length=1488
Score = 300 bits (162), Expect = 6e-80
Identities = 613/821 (75%), Gaps = 69/821 (8%)
Strand=Plus/Plus
Query 253 GACATGATTCGGGCTATACGTGCGA-GTAAAACCGCTGCTGAGGAACGGGCTGTTGTGAG 311
|||||||| || || || | || | || |||| ||||| ||||| || |||||||| ||
Sbjct 406 GACATGATCCGTGCCGTAAGAGC-ATGTCAAACAGCTGCGGAGGAGCGAGCTGTTGTAAG 464
Query 312 GAAAGAGTGTGCTGCGATCCGTGC-TTCGATTAATGAAAATGACCAGGACT-ATAGACAC 369
||||||||||| ||||| || || ||||||||| |||||| | | | |||| |||
Sbjct 465 AAAAGAGTGTGCCAATATCCGAGCATT-AATTAATGAAGATGACCCGCA-TGATAGGCAC 522
Query 370 CGGGATCTAGCAAAGCTTATGTTCATTCATATGCTTGGTTATCCC-ACACATTTTGGGCA 428
||| | || ||||| || ||| |||| || ||||| ||||| ||| ||||| |||| |||
Sbjct 523 CGGAACCTTGCAAAACTCATGCTCATACACATGCTGGGTTA-CCCGACACACTTTGTGCA 581
Query 429 GATGGAATGTTTGAAGTTAATTGCTTCTCCTGGATTTCCAGAGAAGAGGATTGGTTATCT 488
|||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 582 GATGGAGTGTTTGAAGCTAATTGCATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCT 641
Query 489 TGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTGGTCACTAACTCGTT 548
||| ||||||||| | |||| | | ||| | || | | | |||
Sbjct 642 TGGGTTAATGTTGATGCTTG-TCA----CAA-A-GT-------C-G-T---TAA------ 676
Query 549 GAAGCAAGATCTGAATCA-TACGAACCAATACATTGTGGGGCTTGCTCTCTGTGCTTTAG 607
|| |||||||| ||||| | ||||||| || |||| || || ||||||| ||||||||
Sbjct 677 -AA-CAAGATCTTAATCACT-CGAACCAGTATGTTGTAGGACTCGCTCTCTTTGCTTTAG 733
Query 608 GAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGAAAGATTACTTC 667
| |||||||||||||| |||||||| | |||||| || || ||||| ||||||||| | |
Sbjct 734 GGAATATTTGTTCAGCGGAAATGGCCCCTGATCTTGCGCCAGAAGTAGAAAGATTAGTCC 793
Query 668 AATTTCGGGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCCA-TAAGGATCA-TCAG 725
| ||||| || || ||||| || ||||| || || |||||| | | || | || | | ||
Sbjct 794 AGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTTTGCTCTACTA-GAAT-AGTAAG 851
Query 726 AAAAGTTCCGGATCTTTCT-GAGAACTTTATTAATC-CT-AGTGCTGCTTTACTCAAAGA 782
|||||||| ||| || | || |||||| | || | || | |||| | || || |||||
Sbjct 852 GAAAGTTCCAGAT-TTAGTAGAAAACTTTGTAAA-CGCTGA-TGCTTCCTTGCTTAAAGA 908
Query 783 AAAGCATCATGGTGTTCTCATTACG-GGAGTTCACCTTTGC-ACAGAAATCTGTAA-AGT 839
|||||||||||| ||||| || | | |||||||| ||||| | ||| | || | | |
Sbjct 909 AAAGCATCATGGGGTTCTAATAA-GAGGAGTTCAACTTTGTTAT-GAATTATGCACGATT 966
Query 840 CA-GTTCCGAAGCCCTTGAATATTTCCGGAA-GAAATGCACAGAGGG-CTTGGTTAAAAC 896
| | | |||||||| || || ||| | || ||||||||| ||||| || | | ||||
Sbjct 967 AATGAT--GAAGCCCTAGAGTACTTCAG-AACGAAATGCACGGAGGGACT-GAT-AAAAT 1021
Query 897 CCTA-AGAGATATTGCAAACAGTCCATATTCA-CCTGAGTATGACGTCGCTGGAATTACG 954
| || |||||| | || || ||||| || |||||||| || || || || || ||
Sbjct 1022 TTTTGAGGGATATTACTAATTGTGCATAT-CAGCCTGAGTACGATGTTGCAGGGATCACA 1080
Query 955 GATCCATTTCTTCACAT-CAGATTGCTCAAACTG-TTGCGTGTTTTGGGCCAAGGCGATG 1012
|| || |||||||| | | | ||||| || | ||||||||||| ||||| || || |
Sbjct 1081 GACCCTTTTCTTCAAAGACGG-TTGCT-AAGGTTCTTGCGTGTTTTAGGCCAGGGTGACG 1138
Query 1013 CAGAGGCCAGTGACT-GTATGAATGATATACTTGCTCAGGT 1052
| || || ||||| | | |||| | |||||||||| |||||
Sbjct 1139 CTGATGCTAGTGATTTG-ATGACTCATATACTTGCCCAGGT 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148644652109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5