BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475305

Length=2990
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60070.2 | Symbols:  | Adaptor protein complex AP-1, gamma s...  4189    0.0  
  AT1G23900.1 | Symbols: GAMMA-ADAPTIN 1, Gamma-ADR | gamma-adapt...  1131    0.0  
  AT1G23940.1 | Symbols:  | ARM repeat superfamily protein | chr1...   300    6e-80


> AT1G60070.2 | Symbols:  | Adaptor protein complex AP-1, gamma 
subunit | chr1:22142604-22149527 REVERSE LENGTH=3268
Length=3268

 Score = 4189 bits (2268),  Expect = 0.0
 Identities = 2506/2620 (96%), Gaps = 19/2620 (1%)
 Strand=Plus/Plus

Query  1     TTTTCCGTTTTCTTTTAGTGAAGAGaaaaaaaaaaCACAGACGTCTCTCTTTCTTTGTTC  60
             ||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| | |||
Sbjct  18    TTTTCCGTTTTCTTTCAGGGAAGAGAAAAAAAAAACACAGACCTCTCT-TTTCTCTCTTC  76

Query  61    ATATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAGaaaaaaaCTCTCAGATCTGGAA  120
               ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||
Sbjct  77    --ATGTTTTCATCGATAGTGGAAGAGATCAAGTGAAAG--AAAAACACTCAGATCTGGAA  132

Query  121   ATTGAGCTTCTTAGATCTATG-ATTCTTCAAATCCGTTGATCCATTTTCTCGCGC-T-AA  177
             ||| ||||||||||||||||| ||| ||||||| |||||||||||||| || ||| | ||
Sbjct  133   ATTCAGCTTCTTAGATCTATGAATT-TTCAAATTCGTTGATCCATTTT-TC-CGCTTCAA  189

Query  178   TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGATCATGAATCCGTTCTCTTCC  237
             ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct  190   TCGTCTCCGATCTGATTTCATCAGCTTCGTACCGCTCCGGTCATGAATCCATTCTCTTCC  249

Query  238   GGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA  297
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  250   GGCACGCGTCTCAGCGACATGATTCGAGCTATACGTGCGAGTAAAACCGCTGCTGAGGAA  309

Query  298   CGGGCTGTTGTGAGGAAAGAGTGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG  357
             || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  310   CGTGCTGTTGTGAGGAAAGAATGTGCTGCGATCCGTGCTTCGATTAATGAAAATGACCAG  369

Query  358   GACTATAGACACCGGGATCTAGCAAAGCTTATGTTCATTCATATGCTTGGTTATCCC-AC  416
             ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct  370   GACTATAGACATCGGGATCTAGCGAAGCTTATGTTCATTCATATGCTTGGTTA-CCCTAC  428

Query  417   ACATTTTGGGCAGATGGAATGTTTGAAGTTAATTGCTTCTCCTGGATTTCCAGAGAAGAG  476
              ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct  429   TCATTTTGGGCAAATGGAATGCTTGAAGTTAATTGCTTCTCCTGGATTTCCTGAGAAGAG  488

Query  477   GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTGGT  536
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  489   GATTGGTTATCTTGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTTGT  548

Query  537   CACTAACTCGTTGAAGCAAGATCTGAATCATACGAACCAATACATTGTGGGGCTTGCTCT  596
             ||| |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct  549   CACCAACTCGCTGAAGCAAGATCTGAATCACACGAACCAGTACATTGTGGGGCTTGCTCT  608

Query  597   CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA  656
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  609   CTGTGCTTTAGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGA  668

Query  657   AAGATTACTTCAATTTCGGGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCCATAAG  716
             | |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  669   ACGATTACTTCAGTTTCGTGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCGATAAG  728

Query  717   GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTAGTGCTGCTTTACT  776
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  729   GATCATCAGAAAAGTTCCGGATCTTTCTGAGAACTTTATTAATCCTGGTGCTGCTTTACT  788

Query  777   CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA  836
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  789   CAAAGAAAAGCATCATGGTGTTCTCATTACGGGAGTTCACCTTTGCACAGAAATCTGTAA  848

Query  837   AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC  896
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  849   AGTCAGTTCCGAAGCCCTTGAATATTTCCGGAAGAAATGCACAGAGGGCTTGGTTAAAAC  908

Query  897   CCTAAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA  956
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  909   CCTGAGAGATATTGCAAACAGTCCATATTCACCTGAGTATGACGTCGCTGGAATTACGGA  968

Query  957   TCCATTTCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGA  1016
             |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  969   TCCATTCCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGGGATGCAGA  1028

Query  1017  GGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA  1076
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1029  TGCCAGTGACTGTATGAATGATATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAA  1088

Query  1077  AAATGCAGGCAATGCTATCCTATACGAATGTGTTCAAACGATAATGAGCATCGAAGAAAA  1136
             ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1089  AAATGCAGGGAATGCTATCCTATACGAATGCGTTCAAACGATAATGAGCATCGAAGAAAA  1148

Query  1137  TGGTGGTTTACGAGTCCTTGCAATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAA  1196
             ||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1149  TGGTGGCCTACGAGTCCTTGCAATCAATATCTTAGGAAAATTCTTGTCCAACCGAGATAA  1208

Query  1197  TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC  1256
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1209  TAACATCAGATACGTAGCATTAAACATGCTGATGAGATCCTTAACTGTTGATTCCCAAGC  1268

Query  1257  GGTTCAGAGGCACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA  1316
             |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1269  GGTTCAAAGACACAGAGCTACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCA  1328

Query  1317  GAAAAGGGCACTTGAGCTTATTTACCTTCTGGTGAATGAGAATAACGTGAAGCCACTAGC  1376
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1329  GAAAAGGGCACTTGAGCTTATTTACCTTCTAGTGAATGAGAATAACGTGAAGCCACTAGC  1388

Query  1377  AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC  1436
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1389  AAAGGAGCTTATAGAATATTTGGAAGTAAGCGAACAAGATTTTAAAGGAGATCTTACTGC  1448

Query  1437  AAAGATATGCTCCATTGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT  1496
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1449  AAAGATATGCTCCATAGTTGAAAAGTTTGCTCCAGAGAAAATCTGGTACATTGATCAAAT  1508

Query  1497  GCTAAAGGTTCTATCGGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCACTGAT  1556
             ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1509  GCTAAAGGTTCTATCTGAGGCTGGAACTTATGTGAAAGAGGATGTATGGCACGCGCTGAT  1568

Query  1557  TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGC  1616
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1569  TGTTGTAATAACAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTATAGAGC  1628

Query  1617  ATTACATACATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGA  1676
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1629  ATTACATACATCTTTTGAACAGGAAACTCTTGTGCGCGTTGCAATATGGTGCATAGGAGA  1688

Query  1677  ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT  1736
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1689  ATATGCTGATCTGTTGGTTAACAATGCTGGAATGCTTGACTTAGAAGATCCAATAACGGT  1748

Query  1737  AACAGAATCAGATGCAGTGGATGTTGTCGAGACTGCTATTAAGCATCATACATCGGATGT  1796
             |||||||||||||||||||||||||||||||| ||||||||||||||||  ||| |||||
Sbjct  1749  AACAGAATCAGATGCAGTGGATGTTGTCGAGAATGCTATTAAGCATCATTTATCAGATGT  1808

Query  1797  CACGACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCGTTTCCCTTCTTG  1856
             ||| |||||||||||| |||||||||||||||||||||||||||| |||||||| || ||
Sbjct  1809  CACAACTAAGGCAATGGCACTCATTGCTCTGTTAAAGATCTCATCTCGTTTCCCATCCTG  1868

Query  1857  TTCAGAGAGGGTTAAAAGTATTATAGGGCAGAACAAAGGTAGCTTTGTCTTAGAACTGCA  1916
             ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct  1869  TTCAGAGAGAGTTAAAAGTATTATAGGACAGAACAAAGGTAGCTTTGTCTTAGAACTTCA  1928

Query  1917  ACAAAGATCCCTGGAATTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTGCCCT  1976
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  1929  ACAAAGATCCCTGGAGTTCAGTTCAGTTATTCAAAAGCATCAGAATATAAGATCTTCTCT  1988

Query  1977  GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT  2036
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1989  GGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTTAGTGGAAGGAGAGCTGGTTCTTT  2048

Query  2037  ACCAGCAGCTGTGTCAACTTCTGGAAAATCTCCGCTTAGCATTCCAAACGGTGTTGCTAA  2096
             ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  2049  ACCAGCATCTGTGTCAACTTCTGGAAAATCTCCGCTTGGTATTCCAAACGGTGTTGCTAA  2108

Query  2097  AGCTGCTCCAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATACTCCTGCACC  2156
             ||| ||   ||||||||| || ||||||||||| || |||||||||||||||||||| ||
Sbjct  2109  AGCAGC---AGCTCCTCTTGTTGATTTACTCGATCTGGGCTCTGATGATACTCCTGCGCC  2165

Query  2157  TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTAACGCAGCCTTC  2216
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  2166  TACCTCCTCCAGTAACAACTTTCTTCAAGATCTTCTTGGTGTTGATTTATCGCAGCCTTC  2225

Query  2217  AGCACAACCTGGTGCCATGCAGCCATCTAAAGCTGGCGCGGATATTCTTATGGATCTGTT  2276
             |||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||
Sbjct  2226  AGCACAACCTGGTGCCATGCAGCCATCGCAAGCTGGTGCGGATATTCTTATGGATCTGTT  2285

Query  2277  GTCAATTGGAACTCCTGCCCCTGTGCAAAATGGCTCGTCGAATGGAGACTTGTTATCTAT  2336
             |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct  2286  GTCAATCGGAACTCCTGCCCCTGTGCAAAATGGCTCGGCGAATGGAGACTTATTATCTAT  2345

Query  2337  TCAAGATAACAATGCTCCAATAGC-C-TCCAT-GAATACAATTTCTGCGCCTTCTTCGAT  2393
             |||||||||||||||||||||||| | | | | || | |     ||||||||||||||||
Sbjct  2346  TCAAGATAACAATGCTCCAATAGCGCCTTCTTTGACTTCTCCCACTGCGCCTTCTTCGAT  2405

Query  2394  GATGGATCTATTGGATGGATTTGGTCCCACCCCACCAAAGAGTGAGGACAAGGGTGCAGC  2453
             ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct  2406  GATGGATTTATTGGATGGATTTGGTCCCACCCCACCAAAGAGCGAGGACAAGAGTGCAGC  2465

Query  2454  ATATCCGTCCATTGTTGCATTTGAGAGTAGCTCCTTGAAGATTGAGTTCAACTTCACTAA  2513
             |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct  2466  ATATCCGTCCATTGTTGCATTTGAAAGCAGCTCCTTGAAGATTGAGTTCAACTTCACAAA  2525

Query  2514  GCAATCAGAAAATCCTCAAACTATAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA  2573
             ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct  2526  GCAATCAGAAAATCCTCAAACGACAGACATTGTGGCCAATTTCATAAATCTTACTCCTAA  2585

Query  2574  CGTGTACACAGATTTTCTTTTCCAGGCTGCAGTTCCAAAG  2613
             |||||||||||| |||||||||||||||||||||||||||
Sbjct  2586  CGTGTACACAGAATTTCTTTTCCAGGCTGCAGTTCCAAAG  2625


 Score =  503 bits (272),  Expect = 4e-141
 Identities = 333/361 (92%), Gaps = 10/361 (3%)
 Strand=Plus/Plus

Query  2614  TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAACTCTCTTCCAGCCAACGGAAACATC  2673
             ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  2734  TTTCTACAACTTCACCTGGATCCCGCTAGCAGCAATTCTCTTCCAGCTAACGGAAACATC  2793

Query  2674  AAACAAACTATGAGAGTTACAAATAGCCAACAGGGGAAGAAACCCATTGTGATGCGGATG  2733
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  2794  AAACAAACTATGAGAGTTACAAATAGCCAAAAGGGGAAGAAACCCATTGTGATGCGGATG  2853

Query  2734  AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC  2793
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2854  AGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTC  2913

Query  2794  CCACGTGGTTTATGAGAACTTTTCAGGTATCCCAAGATTCATATACATATTCCTAATTCA  2853
             |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct  2914  CCACGTGGGTTATGAGAACGTTTCAGGTATTCCAAGATTCATATACATATTCCTAATTTA  2973

Query  2854  ATATATATAA-T-CACATCC-CTTAGAC----TTCTTCATAGAACGTTTTGTGTGTGTGA  2906
              |||| || | | | |||   || | ||    ||||||||||||| ||| || |||||||
Sbjct  2974  -TATA-ATCACTTCCCATAGACTAAAACAAACTTCTTCATAGAACCTTT-GTATGTGTGA  3030

Query  2907  TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGAGAGATAACTTTTTGATAGTTTGAGTT  2966
             ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct  3031  TTCGTTGGCTTTGTGTGAAATCTGGGTTTAAAGTGAGATAACTTTTTGATGGTCTGAGTT  3090

Query  2967  A  2967
             |
Sbjct  3091  A  3091


> AT1G23900.1 | Symbols: GAMMA-ADAPTIN 1, Gamma-ADR | gamma-adaptin 
1 | chr1:8441171-8447519 FORWARD LENGTH=3141
Length=3141

 Score = 1131 bits (612),  Expect = 0.0
 Identities = 1657/2150 (77%), Gaps = 117/2150 (5%)
 Strand=Plus/Plus

Query  217   ATCATGAATCCGTTCTCTTCCGGCACGCGTCTCAGCGACATGATTCGGGCTATACGTGCG  276
             ||||||||||| || ||||| || || ||| | || |||||||| || || ||| | || 
Sbjct  141   ATCATGAATCCCTTTTCTTCTGGTACTCGTTTAAGGGACATGATCCGTGCCATAAGAGC-  199

Query  277   A-GTAAAACCGCTGCTGAGGAACGGGCTGTTGTGAGGAAA-GAGTGTGCTGCGATCCGTG  334
             | | ||||| ||||| ||||| || |||||||| | |||| |||||||| |  || || |
Sbjct  200   ATGCAAAACAGCTGCGGAGGAGCGAGCTGTTGT-AAGAAAGGAGTGTGCCGATATTCGAG  258

Query  335   C-TTCGATTAATGAAAATGACCAGGACT-ATAGACACCGGGATCTAGC-AAAGCTTATGT  391
             | || |||||||||| |||||| | | | || | |||||| | || || ||| || ||||
Sbjct  259   CATT-GATTAATGAAGATGACCCGCA-TGATCGGCACCGGAACCTTGCGAAA-CTCATGT  315

Query  392   TCATTCATATGCTTGGTTATCCCACACATTTTGGGCAGATGGAATGTTTGAAGTTAATTG  451
             | || || ||||| |||||||||||||| |||||||||||||| || |||||| ||||||
Sbjct  316   TTATACACATGCTGGGTTATCCCACACACTTTGGGCAGATGGAGTGCTTGAAGCTAATTG  375

Query  452   CTTCTCCTGGATTTCCAGAGAAGAGGATTGGTTATCTTGGATTAATGTTGCTTCTTGATG  511
             | ||||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||
Sbjct  376   CATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCTAGGGCTAATGTTGCTTCTTGATG  435

Query  512   AAAGGCAAGAAGTATTAATGCTGGTCACTAACTCGTTGAAGCAAGATCTGAATCA-TACG  570
             | || |||||||| || ||||| ||||| || ||||| || |||||||| ||||| | ||
Sbjct  436   AGAGACAAGAAGTGTTGATGCTTGTCACAAATTCGTTAAAACAAGATCTTAATCACT-CG  494

Query  571   AACCAATACATTGTGGGGCTTGCTCTCTGTGCTTTAGGAAATATTTGTTCAGCAGAAATG  630
             ||||| ||  |||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct  495   AACCAGTATGTTGTAGGACTTGCTCTCTGTGCTTTAGGGAATATTTGTTCAGCAGAAATG  554

Query  631   GCTCGTGATCTCGCCCCTGAAGTTGAAAGATTACTTCAATTTCGGGATCCAAATATACGC  690
             || |||||||| || || ||||| ||||||||| | || ||||| || || ||||| || 
Sbjct  555   GCCCGTGATCTTGCGCCAGAAGTAGAAAGATTAATCCAGTTTCGTGACCCTAATATCCGA  614

Query  691   AAGAAAGCAGCTCTTTGCGCCA-TAAGGATCATCAGAAAAGTTCCGGATCTTTCTGAGAA  749
             ||||| || || |||||| | | || | || || || |||||||| |||||  | || ||
Sbjct  615   AAGAAGGCGGCGCTTTGCTCTACTA-GAATAATAAGGAAAGTTCCAGATCTAGCAGAAAA  673

Query  750   CTTTATTAATCCTAG-TGCTGCTTTACTCAAAGAAAAGCATCATGGTGTTCTCATTACGG  808
             |||  | ||| || | |||| | || || ||||||||||||||||| ||||| || || |
Sbjct  674   CTTCGTAAATGCT-GCTGCTTCCTTGCTTAAAGAAAAGCATCATGGGGTTCTTATAACAG  732

Query  809   GAGTTCACCTTTGC-ACAGAAATCTGTAA-AGTCA-GTTCCGAAGCCCTTGAATATTTCC  865
             ||||||| |||||  |  ||| | || |  | | | | |  |||||||| || || ||| 
Sbjct  733   GAGTTCAACTTTGTTAT-GAATTATGCACGATTAATGAT--GAAGCCCTAGAGTACTTCA  789

Query  866   GGAA-GAAATGCACAGAGGG-CTTGGTTAAAACCCTAAGAGATATTGCAAACAGTC-CAT  922
             | || ||||||||||||||| || | | |||||  | || |||||| | || || | |||
Sbjct  790   G-AACGAAATGCACAGAGGGACT-GATAAAAACTTTGAGGGATATTACTAATAG-CGCAT  846

Query  923   ATTCA-CCTGAGTATGACGTCGCTGGAATTACGGATCCATTTCTTCACAT-CAGATTGCT  980
             || || ||||||||||| || || || || || || || ||||| ||||| | | |||||
Sbjct  847   AT-CAGCCTGAGTATGATGTTGCAGGGATCACAGACCCTTTTCTCCACATACGG-TTGCT  904

Query  981   CAAACTGTTGCGTGTTTTGGGCCAAGGCGATGCAGAGGCCAGTGACT-GTATGA-ATGAT  1038
             ||  || ||||||||||| ||||| || ||||| || || ||||| | | |||| | |||
Sbjct  905   CAGGCTCTTGCGTGTTTTAGGCCAGGGTGATGCTGATGCTAGTGATTTG-ATGACA-GAT  962

Query  1039  ATACTTGCTCAGGTGGCATCAAAAACCGAGTCAAACAAAAATGCAGGCAATGCTATCCTA  1098
             |||||||| ||||||||| ||||||| || ||||||||||| ||||| |||||  | || 
Sbjct  963   ATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAACGCAGGGAATGCGGTACTC  1022

Query  1099  TACGAATGTGTTCAAACGATAATGAGC-ATCGAAGAAAATGGTGGTTTACGAGTCCTTGC  1157
             || || |||||| |||| || ||| || || ||||| |    | | || || || |||||
Sbjct  1023  TATGAGTGTGTTGAAACAATCATG-GCCATTGAAGACACCAATAGCTTGCGTGTGCTTGC  1081

Query  1158  AATCAATATCTTGGGAAAATTCTTGTCCAACCGAGATAATAACATCAGATACGTAGCATT  1217
              |||||||||||||||| |||||| || ||||| || |||||||||||||| || |||||
Sbjct  1082  TATCAATATCTTGGGAAGATTCTTATCTAACCGCGACAATAACATCAGATATGTTGCATT  1141

Query  1218  AAACATGCTGATGAGATCCT-TAACTGTT-GATTCCCAAGCGGTTCAGAGGCACAGAGCT  1275
             |||||||||||||| | | | | ||| || |||   ||||| || || |||||||||| |
Sbjct  1142  AAACATGCTGATGAAAGC-TATCACT-TTCGATGATCAAGCAGTGCAAAGGCACAGAGTT  1199

Query  1276  ACAATCCTGGAGTGTGTTAAGGATTCAGATGCTTCAATTCAGAAAAGGGCACTTGAGCTT  1335
             |||||  |||| ||||| |||||  |||||||||| || | |||||| || |||||||||
Sbjct  1200  ACAATTTTGGAATGTGTGAAGGACCCAGATGCTTCTATCCGGAAAAGAGCTCTTGAGCTT  1259

Query  1336  ATTTAC-CTTCTGGTGAATGAGAATAACGTGA-AGCCACT-AGCAAAGGAGCTTATAGAA  1392
              |  || ||| |||||||||| || || || | | | ||| | |||||||||| || || 
Sbjct  1260  GTC-ACTCTTTTGGTGAATGAAAACAATGTCACA-CAACTGA-CAAAGGAGCTAATTGAT  1316

Query  1393  TATTTGGAAGTAAGCGAAC-AAGATTTTAAAGGA-GATCTTACTGCAAAGATATGCTCCA  1450
             ||||||||| | ||||| | |||||||||| ||| ||||||| |||||| || || |  |
Sbjct  1317  TATTTGGAAATCAGCGA-CGAAGATTTTAA-GGAAGATCTTAGTGCAAAAATTTGTTTTA  1374

Query  1451  TTGTTGAAAAGTTTGCTCCAGAGAAAA-TCTGGTACATTGATCAAATGCTAAAGGTTCTA  1509
             | |||||||||||| ||||||| |||| | |||||||||||||| ||||| |||||||| 
Sbjct  1375  TCGTTGAAAAGTTTTCTCCAGA-AAAACTATGGTACATTGATCAGATGCTCAAGGTTCTG  1433

Query  1510  TCG-GAGGCTGGAAC-TTATGTGAAAGAGGATGTATGGCACGCACTGATTGTTGTAATAA  1567
             | | ||||||||||  || ||||||||| ||||| ||||| ||||| |||||||| ||||
Sbjct  1434  T-GTGAGGCTGGAAAGTT-TGTGAAAGATGATGTGTGGCATGCACTTATTGTTGTCATAA  1491

Query  1568  -CAAATGCCCCTGATCTCCATGGGTACACTGTCAGGGCTTTGTACAGAGCATTACAT-AC  1625
              ||| |||  | || || ||||| || || || ||||| ||||||| | || | | | ||
Sbjct  1492  GCAA-TGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACAAATCAGT-CTTGAC  1549

Query  1626  ATCTTTTGAACAGGAAACGCTTGTGCGCGTTGCAATATGGTGCATAGGAGAATATGCTGA  1685
              | ||  |||||||| || ||||| || || ||  |||||||||| || ||||||| |||
Sbjct  1550  TTATTCGGAACAGGAGACCCTTGTCCGAGTGGCGGTATGGTGCATTGGGGAATATGGTGA  1609

Query  1686  TCTGTTGGTTAACAATGCTGGA-ATGCTTG--ACTTAGAAGATCCAATAACGGTAACAGA  1742
             ||||||||||||||||| |||  |||||||  | || |||||||||||||||||||| ||
Sbjct  1610  TCTGTTGGTTAACAATG-TGGGGATGCTTGGTA-TT-GAAGATCCAATAACGGTAACGGA  1666

Query  1743  ATCAGATGCAGTGGATGTTGTCGAG-ACTGCTATTAAGCATCATA-CATCGGATGTC-AC  1799
             ||| ||||||||||| ||| ||||| | ||| ||||  |  |||| | || ||| || ||
Sbjct  1667  ATCTGATGCAGTGGACGTTATCGAGGA-TGCCATTACTCGCCATAAC-TCAGAT-TCGAC  1723

Query  1800  GACTAAGGCAATGTCACTCATTGCTCTGTTAAAGATCTCATCCCG-TTTCCCTTCT-TGT  1857
              || || |||||| || |  |||||||  | ||| | |||||||| ||||| |||| | |
Sbjct  1724  TACAAAAGCAATGGCATTGGTTGCTCTACTGAAGTTGTCATCCCGCTTTCC-TTCTAT-T  1781

Query  1858  TCAGAGAGGGTTAAA-AGTATTATAGGGCAGAACAAAGGTAGCTTTGTC-TTAGAACTGC  1915
             ||||||||  ||||| |  || || | | || | ||||| ||| || || || ||| |||
Sbjct  1782  TCAGAGAGAATTAAAGAC-ATAATTGTGAAGCAGAAAGGAAGCCTTCTCCTT-GAAATGC  1839

Query  1916  AACAAAGATCCCTGGAATTCAGTTC-AGTTA-TTCAAAAGCATCAGAATATAAGATCTGC  1973
             | || ||| |  | |||| || ||| | | | || | | |||| | ||||| || ||| |
Sbjct  1840  AGCAGAGAGCTATTGAATACAATTCTA-T-AGTTGACAGGCATAAAAATATCAGGTCTTC  1897

Query  1974  CCTGGTTGAAAGAATGCCGGTCCTTGATGAGGCAACATTT-AGTG-GAAGGAGAGCTGGT  2031
              |||||||| ||||||||||| || |||||||| || ||| | || || |||| || || 
Sbjct  1898  TCTGGTTGACAGAATGCCGGTACTGGATGAGGCTAC-TTTCAATGTGA-GGAGGGCCGGC  1955

Query  2032  TCTTTACCAGCAGCTGTGTCAACTTCTGGAAAATC-TCC-GCTTAGCATTCCAAACGGTG  2089
             ||||| || ||| | || |||||   |||  || | | | | ||||| ||| ||| ||||
Sbjct  1956  TCTTTTCCTGCATCAGTTTCAACCA-TGGCCAAGCCTTCAG-TTAGCCTTCAAAATGGTG  2013

Query  2090  TTGCTAAAGCTGC-TC-CAGCTCCTCTAGTAGATTTACTCGACCTTGGCTCTGATGATA-  2146
             |||  ||| || | |  | |||||||| || || || || ||||| |  ||||| |||| 
Sbjct  2014  TTGAGAAA-CTTCCTGTC-GCTCCTCTTGTGGACTTGCTAGACCTAGATTCTGACGATAT  2071

Query  2147  C-TC-CTGCACCTACCTCC-TCCAGTAACA-ACTTTC-TTCAAGATCTTCTTGGTGTTGA  2201
             | |  |||||||||  ||| ||  ||| || | |||| |||| |||||||| ||||| ||
Sbjct  2072  CATGGCTGCACCTAG-TCCATCTGGTA-CAGA-TTTCCTTCAGGATCTTCTCGGTGTAGA  2128

Query  2202  TTTAACG--CAGCCTTCAGCACAACCTGGTGCCATGCAGCCATCTAAA-GCTGGCGCGGA  2258
              |||  |  || | | ||||||||  |||||| |  ||| | || ||| |||||| | ||
Sbjct  2129  CTTAG-GTTCATCGT-CAGCACAATATGGTGCAACCCAGGC-TCCAAAAGCTGGCACAGA  2185

Query  2259  TATTCTTA-TGGATCTGT-TGTCAATTGGAACTCCTGCCCCTGTGCAAAA  2306
             | |  ||  ||||| | | | ||||||||||| ||| | ||||  |||||
Sbjct  2186  TCTG-TTGCTGGATAT-TCTATCAATTGGAACACCTTCTCCTGCACAAAA  2233


> AT1G23940.1 | Symbols:  | ARM repeat superfamily protein | chr1:8466094-8469346 
FORWARD LENGTH=1488
Length=1488

 Score =  300 bits (162),  Expect = 6e-80
 Identities = 613/821 (75%), Gaps = 69/821 (8%)
 Strand=Plus/Plus

Query  253   GACATGATTCGGGCTATACGTGCGA-GTAAAACCGCTGCTGAGGAACGGGCTGTTGTGAG  311
             |||||||| || ||  || | || | || |||| ||||| ||||| || |||||||| ||
Sbjct  406   GACATGATCCGTGCCGTAAGAGC-ATGTCAAACAGCTGCGGAGGAGCGAGCTGTTGTAAG  464

Query  312   GAAAGAGTGTGCTGCGATCCGTGC-TTCGATTAATGAAAATGACCAGGACT-ATAGACAC  369
              |||||||||||    ||||| || ||  ||||||||| |||||| | | | |||| |||
Sbjct  465   AAAAGAGTGTGCCAATATCCGAGCATT-AATTAATGAAGATGACCCGCA-TGATAGGCAC  522

Query  370   CGGGATCTAGCAAAGCTTATGTTCATTCATATGCTTGGTTATCCC-ACACATTTTGGGCA  428
             ||| | || ||||| || ||| |||| || ||||| ||||| ||| ||||| |||| |||
Sbjct  523   CGGAACCTTGCAAAACTCATGCTCATACACATGCTGGGTTA-CCCGACACACTTTGTGCA  581

Query  429   GATGGAATGTTTGAAGTTAATTGCTTCTCCTGGATTTCCAGAGAAGAGGATTGGTTATCT  488
             |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct  582   GATGGAGTGTTTGAAGCTAATTGCATCTCCTGGATTTCCAGAGAAGAGGATTGGATATCT  641

Query  489   TGGATTAATGTTGCTTCTTGATGAAAGGCAAGAAGTATTAATGCTGGTCACTAACTCGTT  548
             ||| ||||||||| | |||| | |    ||| | ||       | | |   |||      
Sbjct  642   TGGGTTAATGTTGATGCTTG-TCA----CAA-A-GT-------C-G-T---TAA------  676

Query  549   GAAGCAAGATCTGAATCA-TACGAACCAATACATTGTGGGGCTTGCTCTCTGTGCTTTAG  607
              || |||||||| ||||| | ||||||| ||  |||| || || ||||||| ||||||||
Sbjct  677   -AA-CAAGATCTTAATCACT-CGAACCAGTATGTTGTAGGACTCGCTCTCTTTGCTTTAG  733

Query  608   GAAATATTTGTTCAGCAGAAATGGCTCGTGATCTCGCCCCTGAAGTTGAAAGATTACTTC  667
             | |||||||||||||| |||||||| | |||||| || || ||||| ||||||||| | |
Sbjct  734   GGAATATTTGTTCAGCGGAAATGGCCCCTGATCTTGCGCCAGAAGTAGAAAGATTAGTCC  793

Query  668   AATTTCGGGATCCAAATATACGCAAGAAAGCAGCTCTTTGCGCCA-TAAGGATCA-TCAG  725
             | ||||| || || ||||| || ||||| || || |||||| | | || | || | | ||
Sbjct  794   AGTTTCGTGACCCTAATATCCGAAAGAAGGCGGCGCTTTGCTCTACTA-GAAT-AGTAAG  851

Query  726   AAAAGTTCCGGATCTTTCT-GAGAACTTTATTAATC-CT-AGTGCTGCTTTACTCAAAGA  782
              |||||||| ||| ||  | || |||||| | || | || | |||| | || || |||||
Sbjct  852   GAAAGTTCCAGAT-TTAGTAGAAAACTTTGTAAA-CGCTGA-TGCTTCCTTGCTTAAAGA  908

Query  783   AAAGCATCATGGTGTTCTCATTACG-GGAGTTCACCTTTGC-ACAGAAATCTGTAA-AGT  839
             |||||||||||| ||||| || | | |||||||| |||||  |  ||| | || |  | |
Sbjct  909   AAAGCATCATGGGGTTCTAATAA-GAGGAGTTCAACTTTGTTAT-GAATTATGCACGATT  966

Query  840   CA-GTTCCGAAGCCCTTGAATATTTCCGGAA-GAAATGCACAGAGGG-CTTGGTTAAAAC  896
              | | |  |||||||| || || ||| | || ||||||||| ||||| || | | |||| 
Sbjct  967   AATGAT--GAAGCCCTAGAGTACTTCAG-AACGAAATGCACGGAGGGACT-GAT-AAAAT  1021

Query  897   CCTA-AGAGATATTGCAAACAGTCCATATTCA-CCTGAGTATGACGTCGCTGGAATTACG  954
               |  || |||||| | ||  || ||||| || |||||||| || || || || || || 
Sbjct  1022  TTTTGAGGGATATTACTAATTGTGCATAT-CAGCCTGAGTACGATGTTGCAGGGATCACA  1080

Query  955   GATCCATTTCTTCACAT-CAGATTGCTCAAACTG-TTGCGTGTTTTGGGCCAAGGCGATG  1012
             || || |||||||| |  | | ||||| ||  |  ||||||||||| ||||| || || |
Sbjct  1081  GACCCTTTTCTTCAAAGACGG-TTGCT-AAGGTTCTTGCGTGTTTTAGGCCAGGGTGACG  1138

Query  1013  CAGAGGCCAGTGACT-GTATGAATGATATACTTGCTCAGGT  1052
             | || || ||||| | | |||| | |||||||||| |||||
Sbjct  1139  CTGATGCTAGTGATTTG-ATGACTCATATACTTGCCCAGGT  1178



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 148644652109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5