BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475318
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59900.1 | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate dehydro... 2222 0.0
AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold ... 795 0.0
> AT1G59900.1 | Symbols: AT-E1 ALPHA, E1 ALPHA | pyruvate dehydrogenase
complex E1 alpha subunit | chr1:22051295-22053885 FORWARD
LENGTH=1468
Length=1468
Score = 2222 bits (1203), Expect = 0.0
Identities = 1333/1394 (96%), Gaps = 15/1394 (1%)
Strand=Plus/Plus
Query 48 AATGGCTCTATCACGCCTCACATCACGATCCAACATCATCACTCGTCCCTTCTCCGCCGC 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 73 AATGGCTCTATCACGCCTCTCATCACGATCCAACATCATCACTCGTCCCTTCTCCGCCGC 132
Query 108 CTTCAGCCGATTGCTCTCAACGGACACAACTCCGATCACAATCGAGACTTCGCTTCCTTT 167
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 CTTCAGCCGATTAATCTCAACGGACACAACTCCGATCACAATCGAGACTTCGCTTCCTTT 192
Query 168 CACAGCTCACTTATGTGATCCACCGTCACGCTCCGTCGAATCATCGAGTCAAGAGCTTCT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CACAGCTCACTTATGTGATCCACCGTCACGCTCCGTCGAATCATCGAGTCAAGAGCTTCT 252
Query 228 CGATTTCTTCCGAACCATGGCGTTGATGCGACGTATGGAAATCGCAGCCGATTCGCTTTA 287
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CGATTTCTTCAGAACCATGGCGTTGATGCGACGTATGGAAATCGCAGCCGATTCGCTTTA 312
Query 288 CAAAGCGAAGCTAATCCGAGGGTTTTGCCATCTCTACGACGGCCAAGAAGCTGTAGCTAT 347
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 313 CAAAGCGAAGCTAATCCGAGGGTTTTGTCATCTCTACGACGGCCAAGAAGCTGTAGCTAT 372
Query 348 AGGCATGGAAGCTGCGATTACAAAGAAAGACGCGATCATTACTGCTTATCGAGATCACTG 407
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 373 AGGCATGGAAGCTGCGATTACAAAGAAAGACGCGATTATTACTGCTTATCGTGATCACTG 432
Query 408 TATTTTCTTAGGTCGTGGTGGTTCGCTTCATGAGATTTTCTCAGAGCTTATGGGAAGACA 467
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 433 TATTTTCTTAGGTCGTGGTGGTTCGCTTCATGAGGTTTTCTCAGAGCTTATGGGAAGACA 492
Query 468 AGCTGGTTGTTCTAAAGGGAAAGGTGGATCTATGCATTTCTATAAGAAGGAATCGTCGTT 527
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 493 AGCTGGTTGTTCTAAAGGGAAAGGTGGATCTATGCACTTCTATAAGAAGGAATCGTCGTT 552
Query 528 TTATGGTGGTCATGGGATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATTGCTTTTGC 587
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TTACGGTGGTCATGGGATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATTGCTTTTGC 612
Query 588 TCAGAAGTATAATAAGGAAGAGGCTGTGACATTTGCTTTGTATGGTGATGGTGCTGCGAA 647
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 613 TCAGAAGTATAACAAGGAAGAGGCTGTCACATTTGCTTTGTATGGTGATGGTGCTGCGAA 672
Query 648 TCAAGGACAGTTGTTTGAAGCTTTGAATATATCTGCTCTTTGGGATTTACCTGCTATTTT 707
||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 673 TCAGGGACAGTTGTTTGAAGCTTTGAATATTTCTGCTCTTTGGGATTTGCCTGCAATTTT 732
Query 708 GGTCTGCGAGAACAATCACTATGGAATGGGAACTGCTGAATGGAGAGCCTCTAAGAGTTC 767
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 733 GGTCTGCGAGAACAATCACTATGGAATGGGAACTGCTGAATGGAGAGCCGCTAAGAGTCC 792
Query 768 ATCTTACTACAAGCGTGGTGATTATGTTCCTGGACTCAAGGTAGATGGTATGGATGCATT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 ATCTTACTACAAGCGTGGTGATTATGTTCCTGGACTCAAGGTAGATGGTATGGATGCATT 852
Query 828 TGCTGTCAAACAAGCTTGCAAATTTGCTAAGCAGCATGCGTTGGAGAAGGGACCAATAAT 887
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 853 TGCTGTCAAACAAGCTTGCAAATTTGCTAAGCAGCATGCGTTGGAGAAGGGGCCAATAAT 912
Query 888 TCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATA 972
Query 948 CCGTACACGAGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAA 1007
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CCGTACCCGAGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAA 1032
Query 1008 AAAGTTGGTACTATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGA 1067
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GAAGCTGGTACTATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGA 1092
Query 1068 AATTAGAAAAGAAGTAGATGACGCCATTGCCAAAGCTAAGGATTGCCCAATGCCAGAGCC 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AATTAGAAAAGAAGTAGATGACGCCATTGCCAAAGCTAAGGATTGCCCAATGCCAGAGCC 1152
Query 1128 TTCTGAGCTTTTTACCAATGTGTATGTGAAAGGATATGGCACCGAGTCATTTGGACCTGA 1187
||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1153 TTCTGAGCTCTTTACCAATGTGTATGTGAAGGGATTTGGCACCGAGTCATTTGGACCTGA 1212
Query 1188 CAGAAAAGAAGTCAAAGCTTCGCTTCCATGATCATGAAGCGATTGTTCGTTAAACTGCCA 1247
||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 1213 CAGAAAAGAAGTCAAAGCTTCCCTTCCATGATCATGGAGCTCTTGTTCGTTAAACTGCCA 1272
Query 1248 CGTGTCATGAGACAGTCGGCTGATGATAGGAAGCTATGAATA--AA----GATCTTATTG 1301
|||||||||||| ||| ||||||| | || || ||||||||| || ||||| ||||
Sbjct 1273 CGTGTCATGAGAAAGTTGGCTGAT-AGAGAAATCTATGAATATGAATAAAGATCTGATTG 1331
Query 1302 TATACTATTActctctctgtctctcctcttctgagttttaatctctctgtatctttcttt 1361
|||||| | ||||||| | | || ||||||| |||||||||||||||||||| |||
Sbjct 1332 TATACTCT--CTCTCTCCC-C-C-CC-CTTCTGAACTTTAATCTCTCTGTATCTTTGTTT 1385
Query 1362 ATATACATAAGGAGAAACA-TGTTATTATTGTGAAGCTTTTGTCAGTCTCGTGTTTAATA 1420
| | ||||||||||||||| ||||||| |||||||||||| || ||||||||||||||||
Sbjct 1386 ACAAACATAAGGAGAAACAATGTTATTCTTGTGAAGCTTTAGT-AGTCTCGTGTTTAATA 1444
Query 1421 TTCAAGCAATTGAG 1434
|||||||||| |||
Sbjct 1445 TTCAAGCAATCGAG 1458
> AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold
(THDP-binding) superfamily protein | chr1:8560525-8563495
REVERSE LENGTH=1547
Length=1547
Score = 795 bits (430), Expect = 0.0
Identities = 881/1093 (81%), Gaps = 54/1093 (5%)
Strand=Plus/Plus
Query 139 CCGATCACAATCGAGA-CTTCGCTTCCTTTCACAGCTCACT-TATGTG-ATCCACCGTCA 195
|||||||||||||| | | || | ||||||||| | || | |||||| || ||||||||
Sbjct 216 CCGATCACAATCGAAACCGCCG-TCCCTTTCACATCGCA-TCTATGTGAAT-CACCGTCA 272
Query 196 CGCTCCGTCGA-A--TCATC-GAGTCAAGAGCTTCTCGATTTCTTCCG-AACCATGGCGT 250
||||||||||| | ||||| ||| ||| ||| | ||| ||||| | |||||| |
Sbjct 273 CGCTCCGTCGAGACTTCATCGGAG--GAGATCTTAGC-CTTT-TTCCGTGA-CATGGC-T 326
Query 251 -TGATG-CGACGTATGGAAATCGCAGCCGATTCGCTTTACAAAGCGAAGCTAATCCGAGG 308
|||| || | ||||| |||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 327 CGGATGAGGA-GGATGGAGATCGCAGCAGATTCTCTTTACAAGGCGAAGCTGATCCGTGG 385
Query 309 GTTTTGCCATCTCTACGACGGCCAAGAAGCTGTAGCTATAGGCATGGAAGCTGCGATTA- 367
||| || ||| | ||||| || ||||| ||| |||| | || |||||||| |||||||
Sbjct 386 GTTCTGTCATTTGTACGATGGTCAAGAGGCTTTAGCGGTGGGAATGGAAGCGGCGATTAC 445
Query 368 CAAAGAAAGACGCGATCATTAC-TGCTTATCGAGATCACTGTATTTTC-TTAGGTCGTGG 425
|||| ||||| ||||| || || | | ||||| |||||||||| |||| || ||||||||
Sbjct 446 CAAA-AAAGATGCGATTATCACAT-CGTATCGTGATCACTGTACTTTCATT-GGTCGTGG 502
Query 426 TGGTTCGCTTCATGA-GATTTTCTCAGAGCTTATGGGAAGACAAGCTGGTTGTTCTAAAG 484
||| |||| ||| | |||||| ||||||||||| ||| || ||||||||||| | |
Sbjct 503 TGGGAAGCTTGTTGATG-CTTTCTCTGAGCTTATGGGGAGAAAAACTGGTTGTTCTCATG 561
Query 485 GGAAAGGTGGATCTATGCATTTCTATAAGAAGGAAT-CGTCGTTTTATGGTGGTCATGGG 543
| ||||| ||||||||||||||||||||||| | || | || ||||||||||| ||||||
Sbjct 562 GTAAAGGAGGATCTATGCATTTCTATAAGAAAG-ATGCTTCCTTTTATGGTGGACATGGG 620
Query 544 ATTGTTGGTGCTCAGGTTCCATTAGGTTGTGGTATT-GCTTTTGCTCAGAAGTATAATAA 602
||||||||||||||| ||||||| || |||||| || |||||||||||||||||||||||
Sbjct 621 ATTGTTGGTGCTCAGATTCCATTGGGATGTGGT-TTGGCTTTTGCTCAGAAGTATAATAA 679
Query 603 GGAAGAGGCTGTGACATTTGCTTTGTATGGTGATGGTGCTGCGAATCAAGGACAGTTGTT 662
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 680 GGATGAGGCTGTGACTTTTGCTTTGTATGGTGATGGTGCTGCGAATCAGGGACAGTTGTT 739
Query 663 TGAAGCTTTGAATATATCTGCTCTT-TGGGATTTACCTGCTATT-TTGGTCTGCGAGAAC 720
||| || ||||| || || ||| || |||||||| ||||| ||| ||| | ||||||||
Sbjct 740 TGAGGCCTTGAACATTTCGGCT-TTGTGGGATTTGCCTGCGATTCTTGTT-TGCGAGAAT 797
Query 721 AATCACTATGGAATGGGAACTGCTGA-ATGGAGAGCCT-CTAAGAGTTCATCTTACTACA 778
|| || |||||||||||||| ||| | |||||| | | ||||| | | |||| | ||
Sbjct 798 AACCATTATGGAATGGGAACGGCT-ACATGGAG-GTCGGCTAAGTCTCCGGCTTATTTCA 855
Query 779 AGCGTGGTGATTATGTTCCTGGACTC-AAGGTAGATGGTATGGATGCATTTGCTGTCAAA 837
||||||| |||||||||||||| || ||||| ||||||||||||||| | ||||| |||
Sbjct 856 AGCGTGGAGATTATGTTCCTGG-CTTGAAGGTGGATGGTATGGATGCACTGGCTGTGAAA 914
Query 838 CAAGCTTGCAAATTTGCTAAGCAGCATGCGT-TGGAGAAGGGACCAATAATTCTTGAGAT 896
|| || ||||| ||||| ||| ||||||| | | |||| || || || || ||||||||
Sbjct 915 CAGGCGTGCAAGTTTGCCAAGGAGCATGC-TCTCAAGAATGGTCCTATTATCCTTGAGAT 973
Query 897 GGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATACCGTACACG 956
|||||| ||||| |||||||||||||| |||||||| || || ||||| |||||||| ||
Sbjct 974 GGACACTTACAGATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCG 1033
Query 957 AGATGAGATATCTGGTGTGAGGCAGGAACGGGATCCAATTGAGAGAATAAAAAAGTTGGT 1016
||||| || ||||| ||||| |||| || ||||||||||| || | ||||||| |
Sbjct 1034 TGATGAAATCTCTGGCGTGAGACAGGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCT 1093
Query 1017 ACT-ATCTCATGACCTAGCAACCGAGAAAGAGCTTAAGGATATGGAGAAGGAAATTAGAA 1075
|| | |||||||| |||| ||||| |||||||||||||| |||||||| || || || |
Sbjct 1094 -CTTAACTCATGACATAGCTACCGAAAAAGAGCTTAAGGACATGGAGAAAGAGATAAGGA 1152
Query 1076 AAGAAGTAGATGACGCCATTGC-CAAAGCTAAGGATTGCCCAATGCCAGA-GCCTTCTGA 1133
||||||||||||||||| | || || || ||||| |||| || ||||| || | ||||
Sbjct 1153 AAGAAGTAGATGACGCCGTAGCTCAG-GCCAAGGAGAGCCCGATACCAGATGCAT-CTGA 1210
Query 1134 GCTTTTTACCAATGTGTATGTGAAAGGA-TATGGCACC-GAGTCATTTGGACCTGACAGA 1191
||| || || || |||| ||||||| | | || | ||||| |||||| | ||||||
Sbjct 1211 GCTATTCACAAACATGTACGTGAAAG-ACTGCGG-AGTTGAGTCGTTTGGAGCAGACAGA 1268
Query 1192 AAAGAAGTCAAAG 1204
|||||| ||||||
Sbjct 1269 AAAGAACTCAAAG 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5