BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475325 Length=1088 Score E Sequences producing significant alignments: (Bits) Value AT1G59840.1 | Symbols: CCB4 | cofactor assembly of complex C | ... 1489 0.0 > AT1G59840.1 | Symbols: CCB4 | cofactor assembly of complex C | chr1:22026546-22028419 FORWARD LENGTH=1162 Length=1162 Score = 1489 bits (806), Expect = 0.0 Identities = 990/1077 (92%), Gaps = 19/1077 (2%) Strand=Plus/Plus Query 1 CATCTTCAATGAAAGCGAGAATCA---TCCTCCAAATTCAAATCCCTTGGAACCCTAATC 57 ||||||||||| |||||||||||| |||||| ||||||||||||||||| | |||||| Sbjct 16 CATCTTCAATGGAAGCGAGAATCATCCTCCTCCGAATTCAAATCCCTTGGAGCGCTAATC 75 Query 58 GCAAATTCTCTCGTACTCCATCAGATTTCCCGCGCTTTATCAGAGCTTATTCTTCTTCTT 117 || ||||||||| | |||| | ||||||||| || ||||||||||| ||||||||| Sbjct 76 GCCAATTCTCTCATCCTCCTTTAGATTTCCCTCGTTTTATCAGAGC---TTCTTCTTC-- 130 Query 118 CTTCAACCTCACAGAAGCCGAGAAGTTACAG-AGGTCCGAAACCGAGCAAGAATTTGGTA 176 | ||||||||||||||||||| || |||| | ||||||||||||||| |||||||| ||| Sbjct 131 C-TCAACCTCACAGAAGCCGAAAACTTAC-GAAGGTCCGAAACCGAGGAAGAATTTAGTA 188 Query 177 GCTGATTTCATTTCCAAAAACGATGACTTGGTTCGGAGCTTACCGATCTACGTCGGAGGC 236 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 189 GCTGATTTCATTTCCAAAAACGATGACTTGGTTCGAAGCTTACCGATCTACGTCGGGGGC 248 Query 237 GCTTCTCTTTTAGCTGTTCTCTTCAATCGGACTGTTTCCGGTATCGCTCCTGTTGCCGAT 296 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 249 GCTTCTCTTTTGGCCGTTCTCTTTAATCGGACTGTTTCCGGTATCGCTCCTGTTGCCGAT 308 Query 297 GCTAGCAGCTCTCAGTCTAGAGCAGATCTATTGGCACTTGGCTTGGCTGTCACCAATTTA 356 ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| || Sbjct 309 GCTAGCAGCTCACAGTCTAGAGCAGATCTATTAGCGCTTGGCTTGGCTGTCACCAATCTA 368 Query 357 TTGACTGGTTTAGTCTGGTTATCGATTCGACCTAAGTCCATAACACCTGTACAA-CCTG- 414 ||||| |||||||||||||||||||||||||||||||| |||||||||||| || || | Sbjct 369 TTGACCGGTTTAGTCTGGTTATCGATTCGACCTAAGTCAATAACACCTGTA-AATCC-GA 426 Query 415 ACGGTGTCGAGTGGAAAGTTGTAGAATCCGGTCTTCCTGCATCGGTAGTTTCCGAATTGT 474 | ||||| || || |||||||||||||| | ||||||||||||| | |||||||| |||| Sbjct 427 AAGGTGTGGAATGCAAAGTTGTAGAATCTGATCTTCCTGCATCGATGGTTTCCGAGTTGT 486 Query 475 TATGGGCTTGGGAATCTTTTAAGGTAGCAACATGTTGTAAGTCTCTAGTTATTGTCTACA 534 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 487 TATGGGCTTGGGAATCTCTTAAGGTAGCAACATGTTGTAAGTCTCTAGTTATTGTCTACA 546 Query 535 ATGGAATTTGCCTTATTCAAATTGGGATGGTTGCTGAATCTCCTGAAGATAAGAAAGCAG 594 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| Sbjct 547 ATGGAATTTGCCTTATTCAAATTGGGATGGTAGCTGAATCTCCAGAAGATAAGAAAACAG 606 Query 595 TCATAGTAAACACCGATAAGCTGATGCAAGGATCGGTTTACCGAGGTGTAATGAAATCTA 654 |||||||||| ||||||||| |||||||||||||||||||| |||| || |||||||| | Sbjct 607 TCATAGTAAAGACCGATAAGTTGATGCAAGGATCGGTTTACAGAGGGGTTATGAAATCCA 666 Query 655 AAGCACAGAGTTACTTGGCCAATCTTTCTCTTTATCCTGGGAGATCAGAGCTACCATTTC 714 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 667 AAGCACAGAGTTACTTGGCTAATCTTTCTCTTTATCCTGGGAGATCAGAGCTGCCATTTC 726 Query 715 TACCTGCAAATACACAGGCGGTGATTTTGCAGCCGCTTGGAGATAAAGGAATCGCAGTCA 774 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 TACCTGCAAATACACAGGCGGTGATTTTGCAGCCGCTTGGAGATAAAGGAATCGCAGTCA 786 Query 775 TTGGTGGAAACACGATTAGAGGCTTCACGTCAGCAGACCAGGCTTGGATTTCTTCAATTG 834 |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 787 TTGGTGGAAATACGATTAGAGGATTCACGTCTTCAGACCAGGCTTGGATTTCTTCAATTG 846 Query 835 GGGAGAAGCTAGATGCGACACTGGGGAGATATTTTATTGATTCTGATGAGATTTCCAGAG 894 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 847 GGGAGAAGCTAGATGCGACACTGGGGAGATATTTTGTTGATTCTGATGAGATTTCCAGAG 906 Query 895 TAACAGTTTGAAAGCAACCAGACCGGAAAAA-CGGAAAA-GGATGTAATCATCTTTCGAA 952 ||||||||||||||| |||||||| |||||| | ||||| |||| ||||||| || |||| Sbjct 907 TAACAGTTTGAAAGCCACCAGACCAGAAAAAACAGAAAATGGATATAATCATATTGCGAA 966 Query 953 AACACATTACAAGGATCGATCACTAAAGGTAATTGTTCATTGTG--ATCATGTGGTTATA 1010 ||||||||||| | || || ||||||||||| ||||||||||| |||||||||||||| Sbjct 967 AACACATTACATGCATTGAGAACTAAAGGTAACTGTTCATTGTGTGATCATGTGGTTATA 1026 Query 1011 TAAAGTTGAAATGAATTCATTGTGTGATCATGTGGTTACATAAAGTCGAAATGAATT 1067 |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 1027 CAAAGTTCAAATGAATTCATTGTGTGATCATGTAGTTACATAAAGTCGAAATAAATT 1083 Score = 134 bits (72), Expect = 2e-30 Identities = 88/96 (92%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 993 TGTGATCATGTGGTTATATAAAGTTGAAATGAATTCATTGTGTGATCATGTGGTTACATA 1052 ||||||||||| |||| ||||||| ||||| |||||| ||||| ||||||||||||||| Sbjct 1049 TGTGATCATGTAGTTACATAAAGTCGAAATAAATTCAATGTGTCATCATGTGGTTACATT 1108 Query 1053 AAGTCGAAATGAATTGTAAAAATAGCTTCAGAAAAC 1088 |||| ||||||||||||||||||||||||||||||| Sbjct 1109 AAGTTGAAATGAATTGTAAAAATAGCTTCAGAAAAC 1144 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53312978790 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5