BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475341

Length=532
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59730.1 | Symbols: ATH7, TH7 | thioredoxin H-type 7 | chr1:...   802    0.0  


> AT1G59730.1 | Symbols: ATH7, TH7 | thioredoxin H-type 7 | chr1:21952634-21953456 
REVERSE LENGTH=579
Length=579

 Score =  802 bits (434),  Expect = 0.0
 Identities = 505/538 (94%), Gaps = 9/538 (2%)
 Strand=Plus/Plus

Query  1    CACTAGCAAATAAATGAATATCATTTCTCCATACAGACACATTCGGAAGACAATGGGTTC  60
            ||||||||||||| |||| | ||||||| |||||| |||||||| ||||| |||||||||
Sbjct  13   CACTAGCAAATAAGTGAACACCATTTCTTCATACATACACATTCCGAAGATAATGGGTTC  72

Query  61   CAATGTTTCATCTGTGCATGATGTTCATTCATCAATGG-AA--ACCAACAATGGATTGGT  117
            |||||||||||||||||||||||||||||||||||||| ||  ||||  |||||||| ||
Sbjct  73   CAATGTTTCATCTGTGCATGATGTTCATTCATCAATGGAAATTACCAGTAATGGATTTGT  132

Query  118  TGTGGAAATCGAATCAAGAAGACAATGGAAATCTCTCTTTGATTCCATGAAAGGCTCAAA  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  133  TGTGGAAATCGAATCAAGAAGACAATGGAAATCTCTCTTTGATTCCATGAAAGGCTCAAA  192

Query  178  CAAATTGCTAGTAATTGATTTTACAGCTGCATGGTGTGGGCCTTGTAAAGCAATGGAACC  237
            ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct  193  CAAATTGCTAGTAATTGATTTCACAGCTGTATGGTGTGGACCTTGTAAAGCAATGGAACC  252

Query  238  TAGAGTTAAGGAGATTGCTTCAAAGTACCCAGAAGCTGTGTTTTCTAGGGTTGATGTGGA  297
            |||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct  253  TAGAGTTAGGGAGATTGCTTCAAAGTACTCAGAAGCTGTGTTTGCTAGGGTTGATGTGGA  312

Query  298  TAGGCTAATGGATGTGGCTGGGACATATAGAGCTATTACACTTCCAGCTTTTGTTTTTGT  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  313  TAGGCTAATGGATGTGGCTGGGACATATAGAGCTATTACACTTCCAGCTTTTGTTTTTGT  372

Query  358  GAAGAGAGGAGAAGAGATTGATAGGGTTGTTGGAGCCAAACCTGATGAGCTCGTGAAGAA  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  373  GAAGAGAGGAGAAGAGATTGATAGGGTTGTTGGAGCCAAACCTGATGAGCTCGTGAAGAA  432

Query  418  GATTGAAAAACATAGGGTTTAAGATTTGT-TTTTCCCCTTACAAAACAAAAGATTAT-A-  474
            ||||||| ||||||||||||||| ||| | ||||||| |||||||| ||| |||||| | 
Sbjct  433  GATTGAACAACATAGGGTTTAAGTTTTTTCTTTTCCC-TTACAAAA-AAATGATTATTAT  490

Query  475  -Cttttgaatgtgtgttgtgaattgattgtttgaagttgagtttttggtttgttgttt  531
             ||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct  491  ACTTTTGAATGTCTGTTCTGAATTGATTGTTTGAAGTTGGGTTTCTGGTTTGTTGTTT  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25468712529


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5