BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475473 Length=524 Score E Sequences producing significant alignments: (Bits) Value AT5G45010.1 | Symbols: ATDSS1(V), DSS1(V) | DSS1 homolog on chr... 412 1e-114 AT1G64750.3 | Symbols: DSS1(I) | deletion of SUV3 suppressor 1(... 344 5e-94 > AT5G45010.1 | Symbols: ATDSS1(V), DSS1(V) | DSS1 homolog on chromosome V | chr5:18167244-18168374 REVERSE LENGTH=582 Length=582 Score = 412 bits (223), Expect = 1e-114 Identities = 407/489 (83%), Gaps = 40/489 (8%) Strand=Plus/Plus Query 48 ACTTGGA-AAATTGATCGAGTTTTCGTCTTCTTCTTCTTAGG---TTTTCTCGATCTGGT 103 ||||||| |||| |||||| ||| || ||||||||||||| ||||||||||||||| Sbjct 71 ACTTGGAGGAATTAATCGAG-TTTGGTGATCTTCTTCTTAGGTTTTTTTCTCGATCTGGT 129 Query 104 TG----G-TT---C--CTTTAACCTATGGCGACAGAACCGAAGGCGGCGACTGCT-GAAG 152 || | || | || ||| |||||||| ||||||| ||||| | ||| | |||| Sbjct 130 TGATTTGCTTAAACATCTGTAA-CTATGGCGGCAGAACCCAAGGC--AG-CTG-TCGAAG 184 Query 153 TGGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAG 212 |||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 185 TGGTGAAGGTGGATCTATTCGAGGACGACGATGAGTTCGAGGAATTTGAAATCAACGAAG 244 Query 213 ATTGGTTGGAGAAAGAAGAAGTCAAGGAAGTTAGCCAGCAGTGGGAAGATGATTGGGATG 272 |||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| Sbjct 245 ATTGGTTGGAGAAAGAGGAAGTGAAGGAAGTTAGCCTGCAGTGGGAAGATGACTGGGATG 304 Query 273 ATGATGATGTCAATGACGACTTCTCGCGTCAGTTAAGGAAGGAGCTTGAGAATGGTATTG 332 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || || Sbjct 305 ATGATGATGTCAGTGACGACTTCTCGCGTCAGTTAAAGAAGGAGCTTGAGAATGCTAGTG 364 Query 333 AGAAGAAATGAGGTCGAAGATTATGA-AAAG-CAGGTTTTCACATTCAGGAAATCTTGG- 389 ||||||||||||||| |||||| || |||| ||||| ||| |||| ||| || ||||| Sbjct 365 AGAAGAAATGAGGTCCAAGATTGCGAGAAAGGCAGGTCTTCTCATTTAGGGAACCTTGGC 424 Query 390 TTTTCTTGTATGA-TCTGGAAC-TTTG-TTT---G-A--ATTGCATCCTTTGT--TTTTC 438 |||| |||| ||| | || | | |||| ||| | | || | ||| || | ||||| Sbjct 425 TTTT-TTGTTTGAAT-TGCATCCTTTGGTTTATCGTAGCAT-GTATCGGTTCTCCTTTTC 481 Query 439 -TTTGCACATTTTACTCTTCCTTGGATGCAGATTCCCTTGTCTTTGAAGATGATAAATTT 497 ||| |||||| |||||||||||||||||| ||| | | ||||||||||||||||||||| Sbjct 482 CTTTACACATTATACTCTTCCTTGGATGCAAATTTC-TCGTCTTTGAAGATGATAAATTT 540 Query 498 GAACTGATA 506 || |||||| Sbjct 541 GAGCTGATA 549 > AT1G64750.3 | Symbols: DSS1(I) | deletion of SUV3 suppressor 1(I) | chr1:24052362-24053908 REVERSE LENGTH=879 Length=879 Score = 344 bits (186), Expect = 5e-94 Identities = 291/337 (86%), Gaps = 25/337 (7%) Strand=Plus/Plus Query 211 AGATTGGTTGGAGAAAGAAGAAGTCAAGGAAGTTAGCCAGCAGTGGGAAGATGATTGGGA 270 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 322 AGATTGGTTGGAGAAAGAAGAAGTGAAGGAAGTTAGCCAGCAGTGGGAAGATGACTGGGA 381 Query 271 TGATGATGATGTCAATGACGACTTCTCGCGTCAGTTAAGGAAGGAGCTTGAGAATGGTAT 330 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 382 TGATGATGATGTCAATGACGACTTCTCACGTCAGTTAAGGAAGGAGCTTGAGAATGGTAC 441 Query 331 TGAGAAGAAATGAGGTCGAAGATTATGAAA-AGCAGGTTTTCACATTCAGGAAATCTTGG 389 ||| ||||||| |||||||||||| ||||| | ||||| |||||||| |||||||||||| Sbjct 442 TGACAAGAAATAAGGTCGAAGATTGTGAAAGA-CAGGTCTTCACATTTAGGAAATCTTGG 500 Query 390 TTTTCTTGTATGATCTGGAACTTTGTTTGAATTGCATCCTTTG-TTT-T-T---C--TT- 440 ||||||| ||||||||||||||||||||| | ||||||||||| ||| | | | || Sbjct 501 TTTTCTTTTATGATCTGGAACTTTGTTTGTACTGCATCCTTTGGTTTATGTTATCGGTTC 560 Query 441 TGC-----------ACATTTTACTCTTCCTTGGATGCAGATTCCCTTGTCTTTGAAGATG 489 ||| |||||||||| |||| |||||| | ||| | || |||||||||||| Sbjct 561 TGCTTTTCCTTTGCACATTTTACTATTCCCTGGATGGAAATTTC-TTATCTTTGAAGATG 619 Query 490 ATAAATTTGAACTGATAA--TCACCATCTTCTCTCAA 524 |||||||| ||||| ||| ||| ||||||||||||| Sbjct 620 ATAAATTTAAACTGGTAAGATCATCATCTTCTCTCAA 656 Score = 167 bits (90), Expect = 1e-40 Identities = 125/140 (89%), Gaps = 10/140 (7%) Strand=Plus/Plus Query 86 AGGTTTTCTCGATCTGGTTGGTTCCTTT---AA-C-----CTATGGCGACAGAACCGAAG 136 ||||| |||||||||||||||||||||| || | |||||||| ||||||||||| Sbjct 65 AGGTTATCTCGATCTGGTTGGTTCCTTTAACAATCTGTAACTATGGCGGCAGAACCGAAG 124 Query 137 GCGGCGACTGCTGAAGTGGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAA 196 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 125 GCAGCGACTGCTGAAGTAGTAAAGATGGATCTGTTTGAGGACGACGATGAGTTCGAGGAA 184 Query 197 TTTGAAATCAACGAAGATTG 216 |||||||| ||||||| ||| Sbjct 185 TTTGAAATTAACGAAG-TTG 203 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25066839353 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5