BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475479
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64770.3 | Symbols: NDF2 | NDH-dependent cyclic electron flo... 1454 0.0
> AT1G64770.3 | Symbols: NDF2 | NDH-dependent cyclic electron flow
1 | chr1:24057063-24059561 FORWARD LENGTH=1746
Length=1746
Score = 1454 bits (787), Expect = 0.0
Identities = 862/896 (96%), Gaps = 13/896 (1%)
Strand=Plus/Plus
Query 39 CATTTGtcttatctttttcttctccatactctccatcaatggcttctcttatctctttct 98
||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 450 CATTTGTCTTATC-TTTTCCTCTCCTTACTCTCCATCAATGGCTTCTCTTATCTCTTTTT 508
Query 99 ctttGCTCCCAAAACCAAAAGCCGTAAGAAGTTCAATTTCAGCTCCTCAGACACAGACAA 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 CTTTGCTCCCAAAACCAAAAGCCGTAAGAAGTTCAATTTCAGCTCCTCAGACACAGACAA 568
Query 159 T-AAT--TGAGAGGCTTGAAGATAAATTCGGACGAAAAGGCATAAAATTCTCGGAATCAA 215
| ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TAAATACTGAAAAGCTTGAAGATAAATTCGGACGAAAAGGCATAAAATTCTCGGAATCAA 628
Query 216 ACAACATTCCTATGGTAGAGCTTAAGGTGAGAAATGGAAGTTCATTAAAACTGAGTCTAT 275
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 629 ACAACATTCCTATGGTAGAGCTTAAGGTCAGAAATGGAAGTTCATTAAAACTGAGTCTAT 688
Query 276 CAGATGCTCATGTGGTTTCATATAAGCCAAAGGTATATTGGAAAGACGAGGGATTCGAGG 335
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 689 CAGATGCTCATGTACTTTCATATAAGCCAAAGGTATACTGGAAAGACGAGGGATTCGAGG 748
Query 336 AAGTCCTTTACACAGTTGATGGTGATGAGAGCAGAGGTGGGGTTGGTGTTGTTATCGTAA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 AAGTCCTTTACACAGTTGATGGTGATGAGAGCAGAGGTGGGGTTGGTGTTGTTATCGTAA 808
Query 396 ACGGGGAAGAACCTAATGGACCAAAAGGAGTGTCTTCAGTAATCTCAGGATATGATTGGA 455
||||||||||||| | ||||||| |||||||||||||||||||| ||||||||
Sbjct 809 ACGGGGAAGAACC---T------AAAGGAGGGTCTTCAGTAATCTCAGGATGTGATTGGA 859
Query 456 GTGTCAAGGATACTGATTCAGACGCCATTGATGCTCTTCAGATCGAACTTAGCTGTACGG 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 GTGTCAAGGATACTGATTCAGACGCCATTGATGCTCTTCAGATCGAACTTAGCTGTACGG 919
Query 516 CCGGGGTTCTCGACATAACGTATATCGTCTCTCTCTATCCAGTAAGCATGGCTACAGCTC 575
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 920 CCGGGGTTCTCGACATAACGTATATCGTCTCTCTCTACCCAGTAAGCATGGCTACAGCTC 979
Query 576 TGGTGGTTAAGAACAATGGTCGCAAACCAGTTACCCTTAAACCGGGGATTATGAGTTACT 635
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TGGTGGTGAAGAACAATGGTCGCAAACCAGTTACCCTTAAACCGGGGATTATGAGTTACT 1039
Query 636 TGAGGTTCAAGAAACGGAGTGGGGCAGGAATTCAAGGACTAAAGGGATGCTCTTATTGCC 695
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1040 TGAGGTTCAAGAAACGGAGTGGGGCAGGAATTCAAGGACTAAAGGGATGCTCTTATTGTC 1099
Query 696 CCAACCCGCCTTTGTCATCGCCTTTTGAGCTCTTGTCTCCTTCCGAGGCAATGAAGGCGG 755
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1100 CCAACCCGCCTTTGTCATCGCCTTTTGAGCTCTTGTCTCCTTCTGAGGCAATGAAGGCGG 1159
Query 756 ACTCTTCCGGGTGGTTTGGGTCGGACGAAGGGGAAAAGCCGGGGATTTGGGCGGTAGAAG 815
| ||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1160 AATCTTCGGGGTGGTTCGGGTCGGAAGAAGGGGAAAAGCCGGGGATTTGGGCAGTAGAAG 1219
Query 816 ATTCTGTTATTACACTTCTTGAGAAAAAGATGAGTAGAATATATGGTGCTCCTCCGGCTG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 ATTCTGTTATTACACTTCTTGAGAAAAAGATGAGTAGAATATATGGTGCTCCTCCGGCTG 1279
Query 876 AGAGATTAAAGGCAGTCTATAACACTCCACCTTCAAAATTTGAAACTATAGATCAG 931
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1280 AGAGATTAAAGGCAGTCTATAACACTCCACCTTCCAAATTTGAAACTATAGATCAG 1335
Score = 453 bits (245), Expect = 2e-126
Identities = 263/271 (97%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 930 AGGGAAGAGGATTGTTTTTCAGGATGATAAGGATAGGGTTCGAAGAGATGTATGTGGGAT 989
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1402 AGGG-AGAGGATTGTTTTTCAGGATGATAAGGATTGGGTTCGAAGAGATGTATGTGGGAT 1460
Query 990 CCCCAGGATCGATGTGGGACAAGTATGGGAAGCAACATTACTTCGTGTGCACAGGTCCAA 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 CCCCAGGATCGATGTGGGACAAGTATGGGAAGCAACATTACTTCGTGTGCACAGGTCCAA 1520
Query 1050 CGTCAATGCTCGTTCCTGTCGATGTGGCCTCCGGAGAGACATGGAGAGGAGCAATGGTAA 1109
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1521 CGTCAATGCTCGTTCCTGTCGATGTAGCCTCCGGAGAGACATGGAGAGGAGCAATGGTAA 1580
Query 1110 TCGAGCATGATAATTTGTAAATTTCATTAACTATAGTTCTGTATTCTTCAtttttt---t 1166
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 1581 TCGAGCATGATAATTTGTAAATTTCATTTACTATAGTTCTGTCTTCTTCATTTTTTCCCT 1640
Query 1167 ctctatttttgttgccattttttCTTCTATA 1197
|||||||||||||||||||||||||||||||
Sbjct 1641 CTCTATTTTTGTTGCCATTTTTTCTTCTATA 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5