BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg475482
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64810.2 | Symbols: APO1 | Arabidopsis thaliana protein of u... 2314 0.0
> AT1G64810.2 | Symbols: APO1 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr1:24086739-24088538 FORWARD
LENGTH=1716
Length=1716
Score = 2314 bits (1253), Expect = 0.0
Identities = 1496/1612 (93%), Gaps = 22/1612 (1%)
Strand=Plus/Plus
Query 16 TCATATCCTCACT-TGTTTTCTTAAATGTTGCAGGAATCAGGGAAAGTAAGCATTTTTGG 74
||| ||||||| | | ||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 48 TCAAATCCTCA-TCTATTTTCTTAAATGTTGCAGGAATCTGGGAAAGTAATCGTTTTTGG 106
Query 75 CTTACTTCTGATTTGGGTTCTTCTTACTTATATAGTCAACATGCTTCTGGTTTCGCCTGC 134
|||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 107 CTTAATTCTGATTTGGG---TTCTTACTTATATAGTCAACATGCTTCTGGTTTCTCCTGC 163
Query 135 TTGTAGAGGTGTTTATCTTCAGACCATAGATCCAAATCCAATTGATTTTTCAGCCAGAGG 194
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 164 TTGTAGAGGTGTTTATCTTCAGACCATAGATCCAAAGCCAATTGATTTCTCAGCTAGAGC 223
Query 195 CTCTTATGCAAGTTGCTTTCAGATTCCT-CGTTCAATCCCTAAAAGGGAGTGCTCGATGA 253
|||||||||| |||||||||||||||| | ||||||||||||||| ||||| | |||||
Sbjct 224 CTCTTATGCACTTTGCTTTCAGATTCCTAC-TTCAATCCCTAAAAGAGAGTGTTTGATGA 282
Query 254 GGTTAAGAACCATAGTTTGTTTCAATCAGAATCTTACAGAGCACACAAGTTTCAAGAAAC 313
||||| |||| | ||||||| |||||||| | || |||||| |||||||| |||||||
Sbjct 283 GGTTAGGAACGGTCTTTTGTTTTAATCAGAAGCATAGAGAGCAGACAAGTTTTAAGAAAC 342
Query 314 GGCATGTATCCACCCAGAATGTGGATCTTCCTCCTATTTTACCAAAGAACAAGAAGAAAC 373
|| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GGTATGTATCTACGCAGAATGTGGATCTTCCTCCTATTTTACCAAAGAACAAGAAGAAAC 402
Query 374 CTTATCCTGTTCCTTTTAAGCAAATTCAAGAAGAGGCTAGGAAAGATAAGAAGCTTGCTC 433
|||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 403 CTTATCCTATTCCTTTTAAGCAAATCCAAGAAGAGGCTAGGAAAGATAAGAAACTTGCTC 462
Query 434 AGATGGGTATAGAGAAACAGTTGGAACCTCCTAAAAATGGATTGCTAGTTCCCAATCTTG 493
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 463 AGATGGGTATAGAGAAACAGTTGGATCCTCCTAAAAATGGATTGCTAGTTCCCAATCTTG 522
Query 494 TTCCTGTGGCGT-ATCAAGTGATAGATAACTGGAAGTTGTTGATCAAGGGTTTAGCACAG 552
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TTCCTGTGGC-TGATCAAGTGATAGATAACTGGAAGTTGTTGATCAAGGGTTTAGCACAG 581
Query 553 CTTCTTCATGTTGTTCCCGTGTTTGCTTGTAGTGAATGTGGAGCGGTTCATGTTGCCAAT 612
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 582 CTTCTTCATGTTGTTCCCGTCTTTGCTTGTAGTGAATGTGGAGCGGTTCATGTGGCTAAT 641
Query 613 GCTGGTCACAACATTAGGGATTGCAATGGTCCAACAAATTCACAGCGACGTGGTTCTCAT 672
| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 642 GTTGGTCATAACATTAGGGATTGTAATGGTCCAACGAATTCACAGCGACGTGGTTCTCAT 701
Query 673 TCATGGGTTAAGGGTACCATCAATGATGTTCTCATTCCTGTTGAGTCGTACCACATGCAT 732
|| ||||||||||||||||| || |||||||| |||||||||||||||||||||||| ||
Sbjct 702 TCTTGGGTTAAGGGTACCATTAACGATGTTCTTATTCCTGTTGAGTCGTACCACATGTAT 761
Query 733 GACCCTTTTGGGCGGCGGATTAAGCACGAAACACGGTTTGACTATGAAAGAATCCCAGCA 792
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 762 GACCCTTTCGGGCGGCGGATTAAGCATGAAACACGGTTTGAGTATGAAAGAATCCCAGCA 821
Query 793 CTTGTTGAGCTATGTATTCAGGCTGGAGTTGAGATCCCTGAGTATCCTTGTCGCAGAAGG 852
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 822 CTTGTTGAGCTATGTATTCAAGCTGGAGTTGAGATCCCTGAGTATCCTTGTCGCAGAAGG 881
Query 853 ACACAGCCAATCCGAATGATGGGGAAGAGAGTGATCGATCGAGGTGGATATCTTAGAGAG 912
|||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 882 ACACAGCCAATCAGAATGATGGGGAAGAGAGTGATCGATCGAGGTGGATATCATAAAGAG 941
Query 913 CCTGATAAGCCTCAG--A-CATCATCATTATCATCTCCACTT-GCCGAGCTTGACACGCT 968
||||| ||||||||| | |||||||||||||||||||| || ||||||||||| || ||
Sbjct 942 CCTGAAAAGCCTCAGACATCATCATCATTATCATCTCCA-TTAGCCGAGCTTGATACTCT 1000
Query 969 TGGAGCTTGTGAAAGGCATCCGCCTCCCACACCAGAGGACATACCTAAGATAGCACAGGA 1028
||| | || ||||||| |||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1001 TGGTGTTTTTGAAAGGTATCCACCTCCCACTCCAGAGGATATACCTAAGATAGCACAGGA 1060
Query 1029 AACAATGGATGCTTATGAAAAAGTGAGATTGGGGGTGACCAAATTGATGAGGAAATTCAC 1088
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1061 AACAATGGATGCTTATGAGAAAGTGAGATTGGGGGTGACGAAATTAATGAGGAAATTCAC 1120
Query 1089 GGTGAAAGCATGCGGATATTGTTCTGAAGTGCATGTAGGACCATGGGGACATAGTGTGAA 1148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1121 AGTGAAAGCATGCGGATATTGTTCTGAAGTGCATGTAGGACCATGGGGACATAGTGTAAA 1180
Query 1149 GCTGTGCGGGGAGTTCAAACACCAATGGAGAGACGGGAAGCACGGATGGCAAGATGCTCT 1208
||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1181 GCTGTGCGGAGAGTTCAAGCACCAATGGAGAGATGGGAAGCACGGATGGCAAGATGCTCT 1240
Query 1209 TGTGGACGAAGTCTTTCCTCCAAATTATGTATGGCATGTGAGAGACCTTAAGGGAAATCC 1268
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1241 TGTGGACGAAGTCTTTCCTCCAAACTATGTATGGCATGTGAGAGACCTTAAGGGAAATCC 1300
Query 1269 GCTTACCGGAAATCTGAGGAGGTTTTATGGTAAAGCCCCTGCTTTGGTTGAGATTTGTAT 1328
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GCTTACCGGAAACCTCAGAAGGTTTTATGGTAAAGCCCCTGCTTTGGTTGAGATTTGTAT 1360
Query 1329 GCACAGTGAAGCTCGGGTTCCTCAACGCTACAAGGCCATGATGAGGCTTGACATCATTGT 1388
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1361 GCACAGTGGAGCTCGGGTTCCTCAACGCTATAAGGCCATGATGAGGCTTGACATCATTGT 1420
Query 1389 TCCTGATTCACAGGAAGCTGACATGGTCGCATAGGTCCTTGGACATGTTCATAGTAGAAA 1448
|||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||
Sbjct 1421 TCCTGATTCACAGGAAGCCGACATGGTCGCATAAGTCCTTGGAAATGTTCAAAGTAGAAC 1480
Query 1449 TCCATTGGTAGGATAAAAAAGTTGATAATAAAATGAGCTGGCTAGCTAGGATCTTTCCTC 1508
||| ||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1481 TCCTTTGTTAGGATAAAGAAGCTGAAAATAAAATGAGCTGGCTAGCTAGGATCTTTCCTC 1540
Query 1509 ATAGGATACGTTAGAAATCTTGTCATATAGTGTATTTTACAATTTGGGTGTAAAATATTT 1568
||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1541 GTAGGAGACATTAGAAATCTTGTCATATAGTGTATTTTGCAATTTGGGTGTAAAATATTT 1600
Query 1569 TAGAA-TCCTGTGTATAAATTAGAA-TATTA-A-ATATTTGTTTGATTCTCT 1616
||||| || ||| ||| | |||| |||| | ||||||||||||||||||
Sbjct 1601 TAGAAATCTTGTC-ATA--T-AGAAATATTTTAGATATTTGTTTGATTCTCT 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79818866550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5