BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475543 Length=1853 Score E Sequences producing significant alignments: (Bits) Value AT1G41830.1 | Symbols: SKS6 | SKU5-similar 6 | chr1:15603617-15... 3013 0.0 > AT1G41830.1 | Symbols: SKS6 | SKU5-similar 6 | chr1:15603617-15607966 REVERSE LENGTH=2068 Length=2068 Score = 3013 bits (1631), Expect = 0.0 Identities = 1783/1856 (96%), Gaps = 11/1856 (1%) Strand=Plus/Plus Query 1 TCTCTCCCTCAACGCACTTAAATTTACATAACTAAGTGTGTGTCTATTCATAtcactcac 60 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26 TCTCTCCCTCGACGCACTTAAATTTACATAACTAAGTGTGTGTCTATTCATATCACTCA- 84 Query 61 tctctctctcttcctcactctcacattctccctctctttattttttctctctcACCACAA 120 ||||||||||||||||| || ||||||||||||| ||| ||||||||||||| |||||| Sbjct 85 -CTCTCTCTCTTCCTCACACTTACATTCTCCCTCTATTT-TTTTTTCTCTCTCTCCACAA 142 Query 121 GAAACGCCGTAGTTCATTAAAAATGATGACGGTGGGCAGATCCGGAGGCACCGTCGTCCT 180 |||||||||| ||||||||||||||||| ||||||||||||||||||||| | | |||| Sbjct 143 GAAACGCCGTCGTTCATTAAAAATGATGGCGGTGGGCAGATCCGGAGGCA-C--CATCCT 199 Query 181 ATTGTTCTGCCTATCATTCTTCGCGGCGGTAACCGCCGAGAGTCCATACCGATTCTTTGA 240 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 200 ATTGTTCTGCCTATCATTCTTCGCCGCGGTAACCGCGGAGAGTCCATACCGATTCTTTGA 259 Query 241 CTGGAATGTAACATACGGCGACATTTACCCACTCGGTGTTCGTCAGCAGGGAATATTGAT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 CTGGAATGTAACATACGGCGACATTTACCCACTCGGTGTTCGTCAGCAGGGAATATTGAT 319 Query 301 TAATGGGAAATTTCCGGGACCGGACATTCACAGTGTGACAAACGACAATCTCATCATTAA 360 ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 320 TAATGGGCAATTTCCGGGACCAGACATTCACAGTGTGACAAACGACAATCTCATCATTAA 379 Query 361 CGTACACAACAGCTTAGACGAGCCTTTCTTAATCTCATGGAACGGAGTACAAAACAGAAG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 CGTACACAACAGCTTAGACGAGCCTTTCTTAATCTCATGGAACGGAGTACAAAACAGAAG 439 Query 421 AAATTCTTATGTCGATGGAATGTACGGAACCACGTGTCCAATTCCACCGAGAAGCAACTA 480 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 440 AAATTCTTATGTTGATGGAATGTACGGAACCACGTGTCCAATTCCACCGAGAAGCAACTA 499 Query 481 CACATACATTTTGCAAGTGAAAGATCAAATTGGAAGTTTCTATTACTTCCCATCTCTTGC 540 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 500 CACATACATTTTGCAAGTGAAAGACCAAATTGGAAGTTTCTATTACTTCCCATCTCTTGC 559 Query 541 TTTTCACAAGGCAGCTGGTGGATTCGGAGGTATCAGAATCCTTAGTCGTCCTGGAATTCC 600 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 560 CTTTCACAAGGCAGCTGGTGGATTCGGAGGTATCAGAATCCTTAGCCGTCCTGGAATTCC 619 Query 601 AGTTCCATTCGCTGACCCTGCAGGAGATTATACTGTCCTCATTGGAAATTGGTACAAATC 660 ||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 620 AGTTCCATTTGCTGACCCTGCAGGAGATTACACTGTCCTCATTGGAGATTGGTACAAATT 679 Query 661 TAATCACACGGATTTGAAGTCTCGTCTTGACAGAGGAAGGAAGTTACCTTTGCCTGATGG 720 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 680 TAATCACACGGATTTGAAGTCTCGTCTTGATAGAGGAAGGAAGTTACCTTCGCCTGATGG 739 Query 721 TATTCTTATCAATGGCCGAAGCAACGGTGCTACCTTAAACGTTGAACAAGGAAAAACATA 780 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 740 TATTCTTATCAATGGCCGAAGTAACGGTGCTACCTTAAACGTTGAACAAGGAAAAACATA 799 Query 781 CCGATTGAGGATATCAAACGTTGGATTACAAGATTCTCTAAATTTCAGAATCCAAAACCA 840 ||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| Sbjct 800 CCGATTGAGGATATCAAACGTTGGATTACAAGATTCTCTGAACTTCCGAATCCAAAACCA 859 Query 841 CAGAATGAAGCTTGTGGAAGTCGAAGGGACGCACACACTTCAAACCATGTTTTCCTCACT 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 860 CAGAATGAAGCTTGTGGAAGTCGAAGGGACGCACACACTTCAAACCATGTTTTCCTCTCT 919 Query 901 GGACGTTCACGTTGGCCAGTCTTACTCCGTTCTGATTACTGCTGACCAATATCCTCGTGA 960 |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 920 TGACGTTCACGTTGGCCAGTCTTACTCCGTTCTAATTACTGCTGACCAATCTCCTCGTGA 979 Query 961 CTACTACGTGGTTGTCTCGTCTCGGTTCACTAATAAAATCATAAC-AGCCACTGGCGTTC 1019 ||||||||||||||| |||||||| ||||| ||||||||||||| | |||| || |||| Sbjct 980 CTACTACGTGGTTGTTTCGTCTCGATTCACGGATAAAATCATAACCA-CCACCGGGGTTC 1038 Query 1020 TTCGCTACAGTGGCTCGTCCACCCCAGCTTCTGGTCCTATTCCTGGTGGTCCCACAATTC 1079 ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||| Sbjct 1039 TTCGCTACAGTGGCTCGTCTACCCCTGCTTCTGGTCCTATTCCTGGCGGTCCCACTATTC 1098 Query 1080 AGGTTGATTGGTCCTTGAACCAAGCACGTGCCATCAGAACCAATTTGACGGCTAGTGGAC 1139 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1099 AGGTTGATTGGTCCTTGAACCAAGCACGTGCCATCAGAACCAATTTGACAGCTAGTGGAC 1158 Query 1140 CAAGACCTAACCCGCAAGGCTCATACCATTATGGTCTTATACCGCTCATTAGGACTATTG 1199 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1159 CAAGACCAAACCCGCAAGGCTCATACCATTATGGTCTTATACCGCTCATTAGGACAATTG 1218 Query 1200 TTTTCGGTAGTTCAGCCGGACAGATAAATGGGAAACAAAGATATGGTGTCAATAGTGTGT 1259 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1219 TGTTCGGTAGTTCAGCCGGACAGATAAACGGGAAACAAAGATATGGTGTCAATAGTGTGT 1278 Query 1260 CATTTGTGCCAGCTGATACCCCTCTAAAACTGGCTGACTTCTTCAAGATTAGTGGTGTCT 1319 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1279 CATTTGTGCCAGCTGATACCCCTCTAAAACTGGCTGACTTCTTCAAGATTAGCGGTGTCT 1338 Query 1320 ATAAGATCAACAGCATCTCGGACAAACCCACATATGGAGGTTTATACCTTGACACATCCG 1379 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || | Sbjct 1339 ATAAGATCAACAGCATCTCAGACAAACCCACATATGGAGGTTTATACCTTGACACCTCAG 1398 Query 1380 TTTTGCAAGTCGACTATCGAACCTTTATCGAGATTGTATTCGAGAACCAAGAAGATATCG 1439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1399 TTTTGCAAGTCGACTATCGAACCTTTATCGAGATTGTATTCGAGAACCAAGAAGATATCG 1458 Query 1440 TCCAAAGTTATCATCTCAATGGTTACTCCTTTTGGGTTGTCGGGATGGATGGTGGACAGT 1499 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1459 TCCAAAGTTATCATCTCAATGGTTACTCCTTTTGGGTGGTCGGGATGGATGGTGGACAGT 1518 Query 1500 GGAAGACAGGAAGCAGAAATGGTTATAATTTACGCGATGCAGTTTCACGTTCCACCGTCC 1559 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1519 GGAAGACAGGAAGCAGAAATGGTTATAATTTACGCGATGCAGTTTCACGTTCCACAGTCC 1578 Query 1560 AAGTGTACCCAAAATCCTGGACAGCCATTTACATTGCATTAGACAACGTAGGAATGTGGA 1619 |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1579 AAGTGTACCCAAAATCATGGACAGCCATATACATTGCATTAGACAACGTTGGAATGTGGA 1638 Query 1620 ACTTAAGATCAGAGTTTTGGGCAAGACAGTACTTGGGACAACAACTTTATTTACGTGTCT 1679 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1639 ACTTAAGATCAGAATTTTGGGCAAGACAGTACTTGGGACAACAACTTTACTTACGTGTCT 1698 Query 1680 TCACGTCATCAACGTCTTTGAGAGATGAGTACCCTATCCCGAAGAATTCGCGTTTGTGCG 1739 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1699 TCACGTCATCTACGTCTTTGAGAGATGAGTACCCTATCCCGAAGAATTCGCGTTTGTGCG 1758 Query 1740 GCCGGGCAAAAGGACGACATACTAGGCCTTTGTAAGGAAGATATACGA--TTACGTGAAA 1797 ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1759 GCCGGGCAAGAGGACGACATACTAGGCCTTTGTAAGGAAGATATACGAGCTTACGTGAAA 1818 Query 1798 GTCATCATATCCATACACGTTTATGTTATTTCTTGCGAAGACTTGCAAGGTTACAA 1853 || ||||||||||||||||||| || |||||||| |||||||||||||||||||| Sbjct 1819 TTCGTCATATCCATACACGTTTAAGT-ATTTCTTGGGAAGACTTGCAAGGTTACAA 1873 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91716395715 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5