BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475559

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | c...  1050    0.0  
  AT2G05935.1 | Symbols:  | transposable element gene | chr2:2278...   318    3e-86


> ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | 
chrC:69910-71882 REVERSE LENGTH=591
Length=591

 Score = 1050 bits (568),  Expect = 0.0
 Identities = 580/586 (99%), Gaps = 0/586 (0%)
 Strand=Plus/Plus

Query  1    ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGG  60

Query  61   GTTGACATATACAACCGACTTTATCGAGAAAGATTAttttttttAGGCCAAGAGGTTGAT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTTGACATATACAACCGACTTTATCGAGAAAGATTATTTTTTTTAGGCCAAGAGGTTGAT  120

Query  121  ACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACC  180

Query  181  AAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATT  240

Query  241  TATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCT  300

Query  301  TCAATAGCATCCTTTATCCTGGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCAC  360
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  301  TCAATAGCATCCTTTATCCTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCAC  360

Query  361  GCTTGGGTAATGATCCATCAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTT  420
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  361  GCTAGGGTAATGATCCATCAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTT  420

Query  421  ATCTTGGAAGCGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGGTTTATGTACAA  480
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  421  ATCTTGGAAGCGGAAGAATTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAA  480

Query  481  AGAACGGGCAAACCTATATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCA  540
            |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  481  AGAACGGGCAAACCTATATGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCA  540

Query  541  GCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTC  586
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  GCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTC  586


> AT2G05935.1 | Symbols:  | transposable element gene | chr2:2278835-2282788 
FORWARD LENGTH=3954
Length=3954

 Score =  318 bits (172),  Expect = 3e-86
 Identities = 201/215 (93%), Gaps = 1/215 (0%)
 Strand=Plus/Plus

Query  365   GGGTAATGATCCATCAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTTATCT  424
             ||||||||||||||||||||||||  | |||||||||||||||||| |||||||||||||
Sbjct  3736  GGGTAATGATCCATCAACCCGCTAATTTGTTTTATGAGGCACAAACAGGAGAATTTATCT  3795

Query  425   TGGAAGCGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGGTTTATGTACAAAGAA  484
             |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  3796  TGGAAGTGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGATTTATGTACGAAGAA  3855

Query  485   CGGGCAAACCTATATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAA  544
             |||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||| |||
Sbjct  3856  CGGGCAAATCTATATGGGTTATATCCGAAGACATTGAACGGGATGTTTTTATGTCAACAA  3915

Query  545   CAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTA  579
             |||| ||||||||||||||||||||| ||||||||
Sbjct  3916  CAGA-GCCCAAGCTCATGGAATTGTTAATCTTGTA  3949



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5