BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg475559 Length=586 Score E Sequences producing significant alignments: (Bits) Value ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | c... 1050 0.0 AT2G05935.1 | Symbols: | transposable element gene | chr2:2278... 318 3e-86 > ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | chrC:69910-71882 REVERSE LENGTH=591 Length=591 Score = 1050 bits (568), Expect = 0.0 Identities = 580/586 (99%), Gaps = 0/586 (0%) Strand=Plus/Plus Query 1 ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAAGTCCTGGAGAAGGAGATACATCTTGG 60 Query 61 GTTGACATATACAACCGACTTTATCGAGAAAGATTAttttttttAGGCCAAGAGGTTGAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTTGACATATACAACCGACTTTATCGAGAAAGATTATTTTTTTTAGGCCAAGAGGTTGAT 120 Query 121 ACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACCGAAATCTCGAATCAACTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACC 180 Query 181 AAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAAGATCTTTATTTGTTTATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATT 240 Query 241 TATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TATGATACTATGCAATTTGTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCT 300 Query 301 TCAATAGCATCCTTTATCCTGGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCAC 360 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCAATAGCATCCTTTATCCTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCAC 360 Query 361 GCTTGGGTAATGATCCATCAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTT 420 ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 361 GCTAGGGTAATGATCCATCAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTT 420 Query 421 ATCTTGGAAGCGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGGTTTATGTACAA 480 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 421 ATCTTGGAAGCGGAAGAATTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAA 480 Query 481 AGAACGGGCAAACCTATATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCA 540 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 481 AGAACGGGCAAACCTATATGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCA 540 Query 541 GCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTC 586 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCAACAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTAGCGGTTC 586 > AT2G05935.1 | Symbols: | transposable element gene | chr2:2278835-2282788 FORWARD LENGTH=3954 Length=3954 Score = 318 bits (172), Expect = 3e-86 Identities = 201/215 (93%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 365 GGGTAATGATCCATCAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTTATCT 424 |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct 3736 GGGTAATGATCCATCAACCCGCTAATTTGTTTTATGAGGCACAAACAGGAGAATTTATCT 3795 Query 425 TGGAAGCGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGGTTTATGTACAAAGAA 484 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 3796 TGGAAGTGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGATTTATGTACGAAGAA 3855 Query 485 CGGGCAAACCTATATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAA 544 |||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||| ||| Sbjct 3856 CGGGCAAATCTATATGGGTTATATCCGAAGACATTGAACGGGATGTTTTTATGTCAACAA 3915 Query 545 CAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTA 579 |||| ||||||||||||||||||||| |||||||| Sbjct 3916 CAGA-GCCCAAGCTCATGGAATTGTTAATCTTGTA 3949 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28181356467 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5