BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg475565

Length=398
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00470.1 | Symbols: ATPE | ATP synthase epsilon chain | chrC...   719    0.0  


> ATCG00470.1 | Symbols: ATPE | ATP synthase epsilon chain | chrC:52265-52663 
REVERSE LENGTH=399
Length=399

 Score =  719 bits (389),  Expect = 0.0
 Identities = 395/398 (99%), Gaps = 0/398 (0%)
 Strand=Plus/Plus

Query  1    ATGACCTTAAATCTTTGTGTACTGACTCCGAATCGAATTGTTTGGGATTCAGAAGTAAAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGACCTTAAATCTTTGTGTACTGACTCCGAATCGAATTGTTTGGGATTCAGAAGTAAAA  60

Query  61   GAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTACCGAACCACGCGCCGATT  120
            |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  61   GAAATCATTTTATCTACTAATAGTGGACAAATTGGTGTATTAGCAAACCACGCGCCGATT  120

Query  121  GCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTACTAACCAATGGTTAACGATG  180
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  121  GCCACAGCTGTTGATATAGGTATTTTGAAAATACGCCTTGCTAACCAATGGTTAACGATG  180

Query  181  GCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAATGAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAATGAT  240

Query  241  GCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GCAGAGAAGAATAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTTGAAATAGCAGAA  300

Query  301  GCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTCAGA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GCTAACTTGAGAAAAGCTGAAGGTAAGAGACAGACAATTGAGGCTAATCTAGCTCTCAGA  360

Query  361  CGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG  398
            ||||||||||||||||||||||||||||||||||||||
Sbjct  361  CGAGCTCGGACACGAGTCGAGGCTCTCAATACGATTTG  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18800138126


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5